RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 RLBP1P12271 317 aa22.55■■□□□ 1.2
SHKBP1-224ENST00000600718 AAMPQ13685 434 aa22.55■■□□□ 1.2
SHKBP1-224ENST00000600718 TNNQ9UQP3 1299 aa22.55■■□□□ 1.2
SHKBP1-224ENST00000600718 KDM6AO15550 1401 aaPredicted RBP22.54■■□□□ 1.2
SHKBP1-224ENST00000600718 CLUAP1Q96AJ1 413 aa22.54■■□□□ 1.2
SHKBP1-224ENST00000600718 TCERG1O14776 1098 aaKnown RBP22.54■■□□□ 1.2
SHKBP1-224ENST00000600718 EIF4A1P60842 406 aaKnown RBP22.54■■□□□ 1.2
SHKBP1-224ENST00000600718 SLC52A2Q9HAB3 445 aa22.54■■□□□ 1.2
SHKBP1-224ENST00000600718 TSHZ2Q9NRE2 1034 aa22.53■■□□□ 1.2
SHKBP1-224ENST00000600718 USP35Q9P2H5 1018 aa22.53■■□□□ 1.2
SHKBP1-224ENST00000600718 CHMP4AQ9BY43 222 aa22.52■■□□□ 1.2
SHKBP1-224ENST00000600718 HOXB7P09629 217 aa22.52■■□□□ 1.2
SHKBP1-224ENST00000600718 MVPQ14764 893 aaKnown RBP22.52■■□□□ 1.2
SHKBP1-224ENST00000600718 NKX1-1Q15270 411 aaPredicted RBP22.52■■□□□ 1.2
SHKBP1-224ENST00000600718 KDM3BQ7LBC6 1761 aa22.51■■□□□ 1.19
SHKBP1-224ENST00000600718 SCN11AQ9UI33 1791 aa22.51■■□□□ 1.19
SHKBP1-224ENST00000600718 PLCH1Q4KWH8 1693 aa22.51■■□□□ 1.19
SHKBP1-224ENST00000600718 CCDC30Q5VVM6 783 aa22.51■■□□□ 1.19
SHKBP1-224ENST00000600718 VIRMAQ69YN4 1812 aaKnown RBP22.51■■□□□ 1.19
SHKBP1-224ENST00000600718 API5Q9BZZ5 524 aaKnown RBP22.5■■□□□ 1.19
SHKBP1-224ENST00000600718 KCNQ3O43525 872 aa22.5■■□□□ 1.19
SHKBP1-224ENST00000600718 SIPA1L3O60292 1781 aaPredicted RBP22.5■■□□□ 1.19
SHKBP1-224ENST00000600718 SPATA31A6Q5VVP1 1343 aa22.49■■□□□ 1.19
SHKBP1-224ENST00000600718 NFATC2IPQ8NCF5 419 aa22.49■■□□□ 1.19
SHKBP1-224ENST00000600718 DISP2A7MBM2 1401 aa22.49■■□□□ 1.19
SHKBP1-224ENST00000600718 SLC4A2P04920 1241 aa22.49■■□□□ 1.19
SHKBP1-224ENST00000600718 STK31Q9BXU1 1019 aa22.49■■□□□ 1.19
SHKBP1-224ENST00000600718 THRAP3Q9Y2W1 955 aaKnown RBP22.49■■□□□ 1.19
SHKBP1-224ENST00000600718 MRC1P22897 1456 aa22.48■■□□□ 1.19
SHKBP1-224ENST00000600718 SLIT2O94813 1529 aa22.48■■□□□ 1.19
SHKBP1-224ENST00000600718 DDX54Q8TDD1 881 aaKnown RBP22.48■■□□□ 1.19
SHKBP1-224ENST00000600718 CABP4P57796 275 aa22.47■■□□□ 1.19
SHKBP1-224ENST00000600718 CDCA7Q9BWT1 371 aaPredicted RBP22.47■■□□□ 1.19
SHKBP1-224ENST00000600718 PTPRCP08575 1304 aa22.47■■□□□ 1.19
SHKBP1-224ENST00000600718 ERVV-2B6SEH9 535 aa22.47■■□□□ 1.19
SHKBP1-224ENST00000600718 DDX19BQ9UMR2 479 aa22.47■■□□□ 1.19
SHKBP1-224ENST00000600718 NRAPQ86VF7 1730 aa22.46■■□□□ 1.19
SHKBP1-224ENST00000600718 NWD2Q9ULI1 1742 aa22.46■■□□□ 1.19
SHKBP1-224ENST00000600718 SPATA31A1Q5TZJ5 1347 aa22.46■■□□□ 1.19
SHKBP1-224ENST00000600718 TMEM57Q8N5G2 664 aa22.46■■□□□ 1.19
SHKBP1-224ENST00000600718 HEG1Q9ULI3 1381 aa22.45■■□□□ 1.19
SHKBP1-224ENST00000600718 ZNF790Q6PG37 636 aa22.45■■□□□ 1.18
SHKBP1-224ENST00000600718 HDGFL1Q5TGJ6 251 aa22.45■■□□□ 1.18
SHKBP1-224ENST00000600718 ITPRIPQ8IWB1 547 aa22.45■■□□□ 1.18
SHKBP1-224ENST00000600718 ABCC4O15439 1325 aa22.44■■□□□ 1.18
SHKBP1-224ENST00000600718 EXOC5O00471 708 aa22.43■■□□□ 1.18
SHKBP1-224ENST00000600718 HSPA1LP34931 641 aa22.43■■□□□ 1.18
SHKBP1-224ENST00000600718 NGLY1Q96IV0 654 aa22.43■■□□□ 1.18
SHKBP1-224ENST00000600718 SPATA31A5Q5VU36 1347 aa22.43■■□□□ 1.18
SHKBP1-224ENST00000600718 SPATA31A7Q8IWB4 1347 aa22.43■■□□□ 1.18
SHKBP1-224ENST00000600718 GIGYF1O75420 1035 aaPredicted RBP22.43■■□□□ 1.18
SHKBP1-224ENST00000600718 UNC5CLQ8IV45 518 aa22.43■■□□□ 1.18
SHKBP1-224ENST00000600718 ANP32EQ9BTT0 268 aa22.43■■□□□ 1.18
SHKBP1-224ENST00000600718 SHANK3Q9BYB0 1731 aa22.43■■□□□ 1.18
SHKBP1-224ENST00000600718 CHMP4BQ9H444 224 aaKnown RBP22.42■■□□□ 1.18
SHKBP1-224ENST00000600718 SLC39A6Q13433 755 aa22.41■■□□□ 1.18
SHKBP1-224ENST00000600718 C8orf37Q96NL8 207 aa22.41■■□□□ 1.18
SHKBP1-224ENST00000600718 NECTIN2Q92692 538 aa22.41■■□□□ 1.18
SHKBP1-224ENST00000600718 EIF2S2P20042 333 aaKnown RBP22.4■■□□□ 1.18
SHKBP1-224ENST00000600718 TTC5Q8N0Z6 440 aa22.4■■□□□ 1.18
SHKBP1-224ENST00000600718 FNBP4Q8N3X1 1017 aaPredicted RBP22.4■■□□□ 1.18
SHKBP1-224ENST00000600718 BARGINQ6ZT62 677 aa22.39■■□□□ 1.18
SHKBP1-224ENST00000600718 G2E3Q7L622 706 aa22.39■■□□□ 1.18
SHKBP1-224ENST00000600718 CCDC9Q9Y3X0 531 aaKnown RBP22.39■■□□□ 1.17
SHKBP1-224ENST00000600718 INTS3Q68E01 1043 aaKnown RBP22.38■■□□□ 1.17
SHKBP1-224ENST00000600718 CENPQQ7L2Z9 268 aaPredicted RBP22.38■■□□□ 1.17
SHKBP1-224ENST00000600718 RGS12O14924 1447 aa22.38■■□□□ 1.17
SHKBP1-224ENST00000600718 FLIIQ13045 1269 aa22.38■■□□□ 1.17
SHKBP1-224ENST00000600718 VPS72Q15906 364 aa22.38■■□□□ 1.17
SHKBP1-224ENST00000600718 KDM2BQ8NHM5 1336 aa22.37■■□□□ 1.17
SHKBP1-224ENST00000600718 FMNL2Q96PY5 1086 aa22.37■■□□□ 1.17
SHKBP1-224ENST00000600718 ZBTB40Q9NUA8 1239 aa22.37■■□□□ 1.17
SHKBP1-224ENST00000600718 BCL9LQ86UU0 1499 aa22.37■■□□□ 1.17
SHKBP1-224ENST00000600718 WNK3Q9BYP7 1800 aa22.37■■□□□ 1.17
SHKBP1-224ENST00000600718 ZNF496Q96IT1 587 aaPredicted RBP22.36■■□□□ 1.17
SHKBP1-224ENST00000600718 TNS2Q63HR2 1409 aa22.36■■□□□ 1.17
SHKBP1-224ENST00000600718 LRP6O75581 1613 aa22.36■■□□□ 1.17
SHKBP1-224ENST00000600718 ZBTB7BO15156 539 aaPredicted RBP22.36■■□□□ 1.17
SHKBP1-224ENST00000600718 DBF4Q9UBU7 674 aaPredicted RBP22.36■■□□□ 1.17
SHKBP1-224ENST00000600718 CACNA1FO60840 1977 aa22.36■■□□□ 1.17
SHKBP1-224ENST00000600718 SNRPA1P09661 255 aaKnown RBP22.35■■□□□ 1.17
SHKBP1-224ENST00000600718 DDB1Q16531 1140 aa22.35■■□□□ 1.17
SHKBP1-224ENST00000600718 PCDHB15Q9Y5E8 787 aa22.35■■□□□ 1.17
SHKBP1-224ENST00000600718 CHPF2Q9P2E5 772 aa22.34■■□□□ 1.17
SHKBP1-224ENST00000600718 TMOD3Q9NYL9 352 aa22.34■■□□□ 1.17
SHKBP1-224ENST00000600718 FKBP5Q13451 457 aaPredicted RBP22.33■■□□□ 1.17
SHKBP1-224ENST00000600718 PRAMEF22A3QJZ6 481 aa22.32■■□□□ 1.16
SHKBP1-224ENST00000600718 MEX3CQ5U5Q3 659 aaKnown RBP22.32■■□□□ 1.16
SHKBP1-224ENST00000600718 USP21Q9UK80 565 aa22.32■■□□□ 1.16
SHKBP1-224ENST00000600718 CCT4P50991 539 aaKnown RBP22.32■■□□□ 1.16
SHKBP1-224ENST00000600718 IGHDP01880 384 aa22.31■■□□□ 1.16
SHKBP1-224ENST00000600718 RWDD1Q9H446 243 aaPredicted RBP22.31■■□□□ 1.16
SHKBP1-224ENST00000600718 PHAXQ9H814 394 aaKnown RBP22.31■■□□□ 1.16
SHKBP1-224ENST00000600718 HYPKQ9NX55 129 aa22.3■■□□□ 1.16
SHKBP1-224ENST00000600718 DDX21Q9NR30 783 aaKnown RBP eCLIP22.3■■□□□ 1.16
SHKBP1-224ENST00000600718 TOGARAM1Q9Y4F4 1720 aa22.29■■□□□ 1.16
SHKBP1-224ENST00000600718 F6X3S4 739 aa22.29■■□□□ 1.16
SHKBP1-224ENST00000600718 PIGBQ92521 554 aa22.29■■□□□ 1.16
SHKBP1-224ENST00000600718 SLC4A10Q6U841 1118 aa22.28■■□□□ 1.16
SHKBP1-224ENST00000600718 USP16Q9Y5T5 823 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms