RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 BABAM1Q9NWV8 329 aa21.56■■□□□ 1.04
SHKBP1-216ENST00000598201 AKAP4Q5JQC9 854 aa21.55■■□□□ 1.04
SHKBP1-216ENST00000598201 AMOTQ4VCS5 1084 aa21.54■■□□□ 1.04
SHKBP1-216ENST00000598201 G2E3Q7L622 706 aa21.54■■□□□ 1.04
SHKBP1-216ENST00000598201 PTPRCP08575 1304 aa21.54■■□□□ 1.04
SHKBP1-216ENST00000598201 LMO7Q8WWI1 1683 aa21.54■■□□□ 1.04
SHKBP1-216ENST00000598201 INTS3Q68E01 1043 aaKnown RBP21.54■■□□□ 1.04
SHKBP1-216ENST00000598201 COL18A1P39060 1754 aa21.53■■□□□ 1.04
SHKBP1-216ENST00000598201 AFF2P51816 1311 aa21.53■■□□□ 1.04
SHKBP1-216ENST00000598201 ANP32AP39687 249 aaKnown RBP21.53■■□□□ 1.04
SHKBP1-216ENST00000598201 MPRIPQ6WCQ1 1025 aa21.53■■□□□ 1.04
SHKBP1-216ENST00000598201 NPM2Q86SE8 214 aaKnown RBP21.53■■□□□ 1.04
SHKBP1-216ENST00000598201 SMC5Q8IY18 1101 aa21.53■■□□□ 1.04
SHKBP1-216ENST00000598201 SLIT2O94813 1529 aa21.53■■□□□ 1.04
SHKBP1-216ENST00000598201 CHMP4BQ9H444 224 aaKnown RBP21.52■■□□□ 1.04
SHKBP1-216ENST00000598201 USP21Q9UK80 565 aa21.52■■□□□ 1.04
SHKBP1-216ENST00000598201 EVA1CP58658 441 aa21.51■■□□□ 1.03
SHKBP1-216ENST00000598201 PLCH1Q4KWH8 1693 aa21.51■■□□□ 1.03
SHKBP1-216ENST00000598201 NECTIN2Q92692 538 aa21.51■■□□□ 1.03
SHKBP1-216ENST00000598201 STRN4Q9NRL3 753 aa21.51■■□□□ 1.03
SHKBP1-216ENST00000598201 NLRP2Q9NX02 1062 aa21.51■■□□□ 1.03
SHKBP1-216ENST00000598201 ABCC6O95255 1503 aa21.5■■□□□ 1.03
SHKBP1-216ENST00000598201 BCL9LQ86UU0 1499 aa21.5■■□□□ 1.03
SHKBP1-216ENST00000598201 UNC5CLQ8IV45 518 aa21.5■■□□□ 1.03
SHKBP1-216ENST00000598201 SIRT2Q8IXJ6 389 aa21.5■■□□□ 1.03
SHKBP1-216ENST00000598201 RNMTO43148 476 aaKnown RBP21.49■■□□□ 1.03
SHKBP1-216ENST00000598201 C1orf141Q5JVX7 400 aa21.49■■□□□ 1.03
SHKBP1-216ENST00000598201 NWD2Q9ULI1 1742 aa21.48■■□□□ 1.03
SHKBP1-216ENST00000598201 KCNQ3O43525 872 aa21.48■■□□□ 1.03
SHKBP1-216ENST00000598201 CCDC30Q5VVM6 783 aa21.48■■□□□ 1.03
SHKBP1-216ENST00000598201 STK31Q9BXU1 1019 aa21.48■■□□□ 1.03
SHKBP1-216ENST00000598201 BCL11AQ9H165 835 aa21.48■■□□□ 1.03
SHKBP1-216ENST00000598201 COL5A2P05997 1499 aaPredicted RBP21.48■■□□□ 1.03
SHKBP1-216ENST00000598201 FAM208AQ9UK61 1670 aaKnown RBP21.47■■□□□ 1.03
SHKBP1-216ENST00000598201 F6X3S4 739 aa21.47■■□□□ 1.03
SHKBP1-216ENST00000598201 EIF4A1P60842 406 aaKnown RBP21.47■■□□□ 1.03
SHKBP1-216ENST00000598201 TEFQ10587 303 aa21.47■■□□□ 1.03
SHKBP1-216ENST00000598201 SOS1Q07889 1333 aaPredicted RBP21.47■■□□□ 1.03
SHKBP1-216ENST00000598201 CSB-PGBD3P0DP91 1061 aa21.46■■□□□ 1.03
SHKBP1-216ENST00000598201 IPO9Q96P70 1041 aaKnown RBP21.46■■□□□ 1.03
SHKBP1-216ENST00000598201 ZNF772Q68DY9 489 aaPredicted RBP21.46■■□□□ 1.03
SHKBP1-216ENST00000598201 KDM3BQ7LBC6 1761 aa21.46■■□□□ 1.03
SHKBP1-216ENST00000598201 LARP1Q6PKG0 1096 aaKnown RBP21.45■■□□□ 1.02
SHKBP1-216ENST00000598201 RAPGEF4Q8WZA2 1011 aa21.45■■□□□ 1.02
SHKBP1-216ENST00000598201 WDR17Q8IZU2 1322 aa21.45■■□□□ 1.02
SHKBP1-216ENST00000598201 BTBD11A6QL63 1104 aa21.44■■□□□ 1.02
SHKBP1-216ENST00000598201 NUCB1Q02818 461 aa21.44■■□□□ 1.02
SHKBP1-216ENST00000598201 FLIIQ13045 1269 aa21.44■■□□□ 1.02
SHKBP1-216ENST00000598201 MEGF6O75095 1541 aa21.44■■□□□ 1.02
SHKBP1-216ENST00000598201 NRAPQ86VF7 1730 aa21.44■■□□□ 1.02
SHKBP1-216ENST00000598201 OVOS2A0A0G2JMS6 1433 aa21.44■■□□□ 1.02
SHKBP1-216ENST00000598201 HDGFL1Q5TGJ6 251 aa21.43■■□□□ 1.02
SHKBP1-216ENST00000598201 TOM1L2Q6ZVM7 507 aa21.43■■□□□ 1.02
SHKBP1-216ENST00000598201 MEIS3Q99687 375 aa21.43■■□□□ 1.02
SHKBP1-216ENST00000598201 QTRT2Q9H974 415 aaKnown RBP21.43■■□□□ 1.02
SHKBP1-216ENST00000598201 RGS17Q9UGC6 210 aaPredicted RBP21.43■■□□□ 1.02
SHKBP1-216ENST00000598201 VPS72Q15906 364 aa21.43■■□□□ 1.02
SHKBP1-216ENST00000598201 SLC4A10Q6U841 1118 aa21.43■■□□□ 1.02
SHKBP1-216ENST00000598201 TRPC5Q9UL62 973 aaPredicted RBP21.43■■□□□ 1.02
SHKBP1-216ENST00000598201 CCDC9Q9Y3X0 531 aaKnown RBP21.43■■□□□ 1.02
SHKBP1-216ENST00000598201 VIRMAQ69YN4 1812 aaKnown RBP21.43■■□□□ 1.02
SHKBP1-216ENST00000598201 TATP17735 454 aaPredicted RBP21.41■■□□□ 1.02
SHKBP1-216ENST00000598201 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.41■■□□□ 1.02
SHKBP1-216ENST00000598201 ATP10DQ9P241 1426 aa21.41■■□□□ 1.02
SHKBP1-216ENST00000598201 FKBP5Q13451 457 aaPredicted RBP21.41■■□□□ 1.02
SHKBP1-216ENST00000598201 CHD1LQ86WJ1 897 aa21.4■■□□□ 1.02
SHKBP1-216ENST00000598201 GCC1Q96CN9 775 aa21.4■■□□□ 1.02
SHKBP1-216ENST00000598201 LNPKQ9C0E8 428 aa21.4■■□□□ 1.02
SHKBP1-216ENST00000598201 USP35Q9P2H5 1018 aa21.4■■□□□ 1.02
SHKBP1-216ENST00000598201 ADAMTS7Q9UKP4 1686 aa21.4■■□□□ 1.02
SHKBP1-216ENST00000598201 EIF2S2P20042 333 aaKnown RBP21.4■■□□□ 1.02
SHKBP1-216ENST00000598201 SEC24BO95487 1268 aa21.39■■□□□ 1.01
SHKBP1-216ENST00000598201 CCT4P50991 539 aaKnown RBP21.39■■□□□ 1.01
SHKBP1-216ENST00000598201 ATRNO75882 1429 aa21.39■■□□□ 1.01
SHKBP1-216ENST00000598201 SPATA31A5Q5VU36 1347 aa21.39■■□□□ 1.01
SHKBP1-216ENST00000598201 SPATA31A7Q8IWB4 1347 aa21.39■■□□□ 1.01
SHKBP1-216ENST00000598201 HOXB7P09629 217 aa21.38■■□□□ 1.01
SHKBP1-216ENST00000598201 CARD10Q9BWT7 1032 aa21.38■■□□□ 1.01
SHKBP1-216ENST00000598201 PHAXQ9H814 394 aaKnown RBP21.38■■□□□ 1.01
SHKBP1-216ENST00000598201 PHKG2P15735 406 aa21.38■■□□□ 1.01
SHKBP1-216ENST00000598201 ANKRD45Q5TZF3 282 aa21.38■■□□□ 1.01
SHKBP1-216ENST00000598201 ANKRD44Q8N8A2 993 aa21.38■■□□□ 1.01
SHKBP1-216ENST00000598201 GJD4Q96KN9 370 aaPredicted RBP21.38■■□□□ 1.01
SHKBP1-216ENST00000598201 SPG7Q9UQ90 795 aa21.38■■□□□ 1.01
SHKBP1-216ENST00000598201 KDM6AO15550 1401 aaPredicted RBP21.38■■□□□ 1.01
SHKBP1-216ENST00000598201 SPATA31A1Q5TZJ5 1347 aa21.37■■□□□ 1.01
SHKBP1-216ENST00000598201 CACNA1FO60840 1977 aa21.37■■□□□ 1.01
SHKBP1-216ENST00000598201 SIPA1L3O60292 1781 aaPredicted RBP21.37■■□□□ 1.01
SHKBP1-216ENST00000598201 CEP85Q6P2H3 762 aa21.37■■□□□ 1.01
SHKBP1-216ENST00000598201 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.37■■□□□ 1.01
SHKBP1-216ENST00000598201 NOP58Q9Y2X3 529 aaKnown RBP21.37■■□□□ 1.01
SHKBP1-216ENST00000598201 CHPF2Q9P2E5 772 aa21.36■■□□□ 1.01
SHKBP1-216ENST00000598201 HEG1Q9ULI3 1381 aa21.36■■□□□ 1.01
SHKBP1-216ENST00000598201 POTEAQ6S8J7 498 aa21.35■■□□□ 1.01
SHKBP1-216ENST00000598201 RPAP2Q8IXW5 612 aaPredicted RBP21.35■■□□□ 1.01
SHKBP1-216ENST00000598201 CYP27B1O15528 508 aa21.34■■□□□ 1.01
SHKBP1-216ENST00000598201 GIGYF1O75420 1035 aaPredicted RBP21.34■■□□□ 1.01
SHKBP1-216ENST00000598201 DCTPP1Q9H773 170 aa21.34■■□□□ 1.01
SHKBP1-216ENST00000598201 PRAMEF22A3QJZ6 481 aa21.33■■□□□ 1.01
SHKBP1-216ENST00000598201 IFNL2Q8IZJ0 200 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms