RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 GNPATO15228 680 aa17.22■□□□□ 0.35
TRIM28-212ENST00000597995 ADCY9O60503 1353 aa17.21■□□□□ 0.35
TRIM28-212ENST00000597995 HSP90AB1P08238 724 aaKnown RBP17.21■□□□□ 0.35
TRIM28-212ENST00000597995 GPBP1L1Q9HC44 474 aaPredicted RBP17.21■□□□□ 0.35
TRIM28-212ENST00000597995 TNNT2P45379 298 aaPredicted RBP17.2■□□□□ 0.34
TRIM28-212ENST00000597995 DCAF5Q96JK2 942 aa17.2■□□□□ 0.34
TRIM28-212ENST00000597995 POLR3GLQ9BT43 218 aa17.2■□□□□ 0.34
TRIM28-212ENST00000597995 KDRP35968 1356 aa17.19■□□□□ 0.34
TRIM28-212ENST00000597995 HSPA5P11021 654 aaKnown RBP17.19■□□□□ 0.34
TRIM28-212ENST00000597995 PLEKHO1Q53GL0 409 aaPredicted RBP17.19■□□□□ 0.34
TRIM28-212ENST00000597995 TRAPPC3LQ5T215 181 aa17.19■□□□□ 0.34
TRIM28-212ENST00000597995 RC3H1Q5TC82 1133 aaKnown RBP17.19■□□□□ 0.34
TRIM28-212ENST00000597995 RTCBQ9Y3I0 505 aaKnown RBP17.19■□□□□ 0.34
TRIM28-212ENST00000597995 MMP10P09238 476 aa17.18■□□□□ 0.34
TRIM28-212ENST00000597995 ADRA2BP18089 450 aa17.18■□□□□ 0.34
TRIM28-212ENST00000597995 AMOTQ4VCS5 1084 aa17.18■□□□□ 0.34
TRIM28-212ENST00000597995 NLGN1Q8N2Q7 840 aa17.18■□□□□ 0.34
TRIM28-212ENST00000597995 ZNF831Q5JPB2 1677 aa17.17■□□□□ 0.34
TRIM28-212ENST00000597995 EIF4G2P78344 907 aaKnown RBP eCLIP17.17■□□□□ 0.34
TRIM28-212ENST00000597995 SLC4A9Q96Q91 983 aa17.17■□□□□ 0.34
TRIM28-212ENST00000597995 PANK3Q9H999 370 aa17.17■□□□□ 0.34
TRIM28-212ENST00000597995 CEP350Q5VT06 3117 aa17.16■□□□□ 0.34
TRIM28-212ENST00000597995 TGFB2P61812 414 aa17.16■□□□□ 0.34
TRIM28-212ENST00000597995 RBM42Q9BTD8 480 aaKnown RBP17.16■□□□□ 0.34
TRIM28-212ENST00000597995 CNTNAP4Q9C0A0 1308 aa17.16■□□□□ 0.34
TRIM28-212ENST00000597995 RPS6KA4O75676 772 aa17.15■□□□□ 0.34
TRIM28-212ENST00000597995 CABP4P57796 275 aa17.15■□□□□ 0.34
TRIM28-212ENST00000597995 WWC3Q9ULE0 1092 aa17.15■□□□□ 0.34
TRIM28-212ENST00000597995 ZNF530Q6P9A1 599 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-212ENST00000597995 ARHGEF1Q92888 912 aaKnown RBP17.14■□□□□ 0.33
TRIM28-212ENST00000597995 KIF13BQ9NQT8 1826 aa17.13■□□□□ 0.33
TRIM28-212ENST00000597995 RFC4P35249 363 aa17.13■□□□□ 0.33
TRIM28-212ENST00000597995 MTHFSP49914 203 aa17.13■□□□□ 0.33
TRIM28-212ENST00000597995 ZNF526Q8TF50 670 aaPredicted RBP17.13■□□□□ 0.33
TRIM28-212ENST00000597995 KDM6AO15550 1401 aaPredicted RBP17.13■□□□□ 0.33
TRIM28-212ENST00000597995 PXDNLA1KZ92 1463 aa17.12■□□□□ 0.33
TRIM28-212ENST00000597995 CICQ96RK0 1608 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-212ENST00000597995 GYS1P13807 737 aa17.12■□□□□ 0.33
TRIM28-212ENST00000597995 C1orf141Q5JVX7 400 aa17.12■□□□□ 0.33
TRIM28-212ENST00000597995 HSPA6P17066 643 aa17.11■□□□□ 0.33
TRIM28-212ENST00000597995 MORC1Q86VD1 984 aa17.11■□□□□ 0.33
TRIM28-212ENST00000597995 CCDC87Q9NVE4 849 aa17.11■□□□□ 0.33
TRIM28-212ENST00000597995 C10orf71Q711Q0 1435 aa17.11■□□□□ 0.33
TRIM28-212ENST00000597995 COL5A3P25940 1745 aaPredicted RBP17.1■□□□□ 0.33
TRIM28-212ENST00000597995 A0A0G2JLW4 131 aa17.1■□□□□ 0.33
TRIM28-212ENST00000597995 KIF3CO14782 793 aa17.09■□□□□ 0.33
TRIM28-212ENST00000597995 AEBP1Q8IUX7 1158 aa17.09■□□□□ 0.33
TRIM28-212ENST00000597995 NFATC2IPQ8NCF5 419 aa17.09■□□□□ 0.33
TRIM28-212ENST00000597995 BCS1LQ9Y276 419 aa17.09■□□□□ 0.33
TRIM28-212ENST00000597995 PARP3Q9Y6F1 533 aa17.09■□□□□ 0.33
TRIM28-212ENST00000597995 KIAA1551Q9HCM1 1747 aa17.09■□□□□ 0.33
TRIM28-212ENST00000597995 MYH14Q7Z406 1995 aaKnown RBP17.08■□□□□ 0.33
TRIM28-212ENST00000597995 PTCD1O75127 700 aaKnown RBP17.08■□□□□ 0.32
TRIM28-212ENST00000597995 SULT6B1Q6IMI4 303 aa17.08■□□□□ 0.32
TRIM28-212ENST00000597995 C4AP0C0L4 1744 aa17.07■□□□□ 0.32
TRIM28-212ENST00000597995 DPEP1P16444 411 aa17.07■□□□□ 0.32
TRIM28-212ENST00000597995 IL13P35225 146 aa17.07■□□□□ 0.32
TRIM28-212ENST00000597995 CRKLP46109 303 aaKnown RBP17.07■□□□□ 0.32
TRIM28-212ENST00000597995 KNSTRNQ9Y448 316 aa17.07■□□□□ 0.32
TRIM28-212ENST00000597995 N4BP2Q86UW6 1770 aaPredicted RBP17.07■□□□□ 0.32
TRIM28-212ENST00000597995 ARHGAP27Q6ZUM4 889 aa17.06■□□□□ 0.32
TRIM28-212ENST00000597995 USP42Q9H9J4 1324 aaKnown RBP17.05■□□□□ 0.32
TRIM28-212ENST00000597995 FCHSD2O94868 740 aa17.05■□□□□ 0.32
TRIM28-212ENST00000597995 KCNA3P22001 575 aa17.05■□□□□ 0.32
TRIM28-212ENST00000597995 IFFO2Q5TF58 517 aa17.05■□□□□ 0.32
TRIM28-212ENST00000597995 AKAP4Q5JQC9 854 aa17.04■□□□□ 0.32
TRIM28-212ENST00000597995 TOMM70O94826 608 aa17.03■□□□□ 0.32
TRIM28-212ENST00000597995 INTS5Q6P9B9 1019 aaKnown RBP17.03■□□□□ 0.32
TRIM28-212ENST00000597995 PIM2Q9P1W9 311 aa17.03■□□□□ 0.32
TRIM28-212ENST00000597995 BRCA1P38398 1863 aaKnown RBP17.02■□□□□ 0.32
TRIM28-212ENST00000597995 FKBP8Q14318 412 aa17.02■□□□□ 0.32
TRIM28-212ENST00000597995 AMER1Q5JTC6 1135 aaPredicted RBP17.02■□□□□ 0.32
TRIM28-212ENST00000597995 SLC52A2Q9HAB3 445 aa17.02■□□□□ 0.32
TRIM28-212ENST00000597995 SRP68Q9UHB9 627 aaKnown RBP17.02■□□□□ 0.32
TRIM28-212ENST00000597995 SCN11AQ9UI33 1791 aa17.02■□□□□ 0.31
TRIM28-212ENST00000597995 TM4SF1P30408 202 aa17■□□□□ 0.31
TRIM28-212ENST00000597995 TJP1Q07157 1748 aa17■□□□□ 0.31
TRIM28-212ENST00000597995 DDR1Q08345 913 aa17■□□□□ 0.31
TRIM28-212ENST00000597995 ARFGEF1Q9Y6D6 1849 aa17■□□□□ 0.31
TRIM28-212ENST00000597995 KIF7Q2M1P5 1343 aa16.99■□□□□ 0.31
TRIM28-212ENST00000597995 ZPR1O75312 459 aa16.99■□□□□ 0.31
TRIM28-212ENST00000597995 APLP1P51693 650 aa16.99■□□□□ 0.31
TRIM28-212ENST00000597995 DALRD3Q5D0E6 543 aaKnown RBP16.99■□□□□ 0.31
TRIM28-212ENST00000597995 DNAJC10Q8IXB1 793 aa16.99■□□□□ 0.31
TRIM28-212ENST00000597995 LGR6Q9HBX8 967 aa16.99■□□□□ 0.31
TRIM28-212ENST00000597995 POLRMTO00411 1230 aaKnown RBP16.98■□□□□ 0.31
TRIM28-212ENST00000597995 RNMTO43148 476 aaKnown RBP16.98■□□□□ 0.31
TRIM28-212ENST00000597995 C9orf131Q5VYM1 1079 aa16.98■□□□□ 0.31
TRIM28-212ENST00000597995 SOS1Q07889 1333 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-212ENST00000597995 CYP19A1P11511 503 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-212ENST00000597995 NMRK2Q9NPI5 230 aa16.97■□□□□ 0.31
TRIM28-212ENST00000597995 ADAMTS7Q9UKP4 1686 aa16.97■□□□□ 0.31
TRIM28-212ENST00000597995 USPL1Q5W0Q7 1092 aa16.96■□□□□ 0.31
TRIM28-212ENST00000597995 VSIG10Q8N0Z9 540 aa16.96■□□□□ 0.31
TRIM28-212ENST00000597995 NARFQ9UHQ1 456 aa16.96■□□□□ 0.31
TRIM28-212ENST00000597995 MRC1P22897 1456 aa16.96■□□□□ 0.31
TRIM28-212ENST00000597995 HMOX1P09601 288 aa16.95■□□□□ 0.3
TRIM28-212ENST00000597995 CHRNA5P30532 468 aa16.95■□□□□ 0.3
TRIM28-212ENST00000597995 SLC39A6Q13433 755 aa16.95■□□□□ 0.3
TRIM28-212ENST00000597995 RBM46Q8TBY0 533 aaKnown RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms