RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 FSTL1Q12841 308 aa19.38■□□□□ 0.69
SHKBP1-208ENST00000595726 SMG6Q86US8 1419 aaKnown RBP19.38■□□□□ 0.69
SHKBP1-208ENST00000595726 KIAA1551Q9HCM1 1747 aa19.38■□□□□ 0.69
SHKBP1-208ENST00000595726 KCNA3P22001 575 aa19.37■□□□□ 0.69
SHKBP1-208ENST00000595726 TMF1P82094 1093 aa19.36■□□□□ 0.69
SHKBP1-208ENST00000595726 NKX1-1Q15270 411 aaPredicted RBP19.36■□□□□ 0.69
SHKBP1-208ENST00000595726 MAP2P11137 1827 aaKnown RBP19.36■□□□□ 0.69
SHKBP1-208ENST00000595726 KCPQ6ZWJ8 1503 aa19.35■□□□□ 0.69
SHKBP1-208ENST00000595726 INSRP06213 1382 aa19.35■□□□□ 0.69
SHKBP1-208ENST00000595726 TRAPPC3LQ5T215 181 aa19.35■□□□□ 0.69
SHKBP1-208ENST00000595726 NLGN1Q8N2Q7 840 aa19.35■□□□□ 0.69
SHKBP1-208ENST00000595726 TMOD3Q9NYL9 352 aa19.35■□□□□ 0.69
SHKBP1-208ENST00000595726 C10orf71Q711Q0 1435 aa19.34■□□□□ 0.69
SHKBP1-208ENST00000595726 ATG3Q9NT62 314 aa19.34■□□□□ 0.69
SHKBP1-208ENST00000595726 KIF13BQ9NQT8 1826 aa19.33■□□□□ 0.69
SHKBP1-208ENST00000595726 ARHGEF1Q92888 912 aaKnown RBP19.33■□□□□ 0.68
SHKBP1-208ENST00000595726 TESK2Q96S53 571 aa19.33■□□□□ 0.68
SHKBP1-208ENST00000595726 RNF181Q9P0P0 153 aa19.33■□□□□ 0.68
SHKBP1-208ENST00000595726 RTCBQ9Y3I0 505 aaKnown RBP19.33■□□□□ 0.68
SHKBP1-208ENST00000595726 KDM2BQ8NHM5 1336 aa19.32■□□□□ 0.68
SHKBP1-208ENST00000595726 CCDC87Q9NVE4 849 aa19.32■□□□□ 0.68
SHKBP1-208ENST00000595726 ST20-MTHFSA0A0A6YYL1 179 aa19.31■□□□□ 0.68
SHKBP1-208ENST00000595726 GYS1P13807 737 aa19.31■□□□□ 0.68
SHKBP1-208ENST00000595726 SLC4A9Q96Q91 983 aa19.31■□□□□ 0.68
SHKBP1-208ENST00000595726 SPG7Q9UQ90 795 aa19.31■□□□□ 0.68
SHKBP1-208ENST00000595726 HSPA1AP0DMV8 641 aaKnown RBP19.3■□□□□ 0.68
SHKBP1-208ENST00000595726 HSPA1BP0DMV9 641 aaKnown RBP19.3■□□□□ 0.68
SHKBP1-208ENST00000595726 PARP3Q9Y6F1 533 aa19.3■□□□□ 0.68
SHKBP1-208ENST00000595726 FLT4P35916 1363 aa19.3■□□□□ 0.68
SHKBP1-208ENST00000595726 PIM2Q9P1W9 311 aa19.29■□□□□ 0.68
SHKBP1-208ENST00000595726 EMILIN1Q9Y6C2 1016 aa19.29■□□□□ 0.68
SHKBP1-208ENST00000595726 PLEKHG2Q9H7P9 1386 aa19.29■□□□□ 0.68
SHKBP1-208ENST00000595726 SMC1BQ8NDV3 1235 aa19.28■□□□□ 0.68
SHKBP1-208ENST00000595726 DCAF5Q96JK2 942 aa19.28■□□□□ 0.68
SHKBP1-208ENST00000595726 RBM42Q9BTD8 480 aaKnown RBP19.28■□□□□ 0.68
SHKBP1-208ENST00000595726 PPM1GO15355 546 aaPredicted RBP19.27■□□□□ 0.68
SHKBP1-208ENST00000595726 RFC4P35249 363 aa19.27■□□□□ 0.68
SHKBP1-208ENST00000595726 TRIM26Q12899 539 aaPredicted RBP19.27■□□□□ 0.68
SHKBP1-208ENST00000595726 DALRD3Q5D0E6 543 aaKnown RBP19.27■□□□□ 0.68
SHKBP1-208ENST00000595726 PKD1L3Q7Z443 1732 aa19.26■□□□□ 0.67
SHKBP1-208ENST00000595726 PHKG2P15735 406 aa19.26■□□□□ 0.67
SHKBP1-208ENST00000595726 CHRNA5P30532 468 aa19.26■□□□□ 0.67
SHKBP1-208ENST00000595726 C4AP0C0L4 1744 aa19.25■□□□□ 0.67
SHKBP1-208ENST00000595726 EYA1Q99502 592 aa19.25■□□□□ 0.67
SHKBP1-208ENST00000595726 BRCA1P38398 1863 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-208ENST00000595726 RPS6KA4O75676 772 aa19.24■□□□□ 0.67
SHKBP1-208ENST00000595726 IFNL2Q8IZJ0 200 aa19.24■□□□□ 0.67
SHKBP1-208ENST00000595726 SRP68Q9UHB9 627 aaKnown RBP19.24■□□□□ 0.67
SHKBP1-208ENST00000595726 KDRP35968 1356 aa19.23■□□□□ 0.67
SHKBP1-208ENST00000595726 RC3H1Q5TC82 1133 aaKnown RBP19.23■□□□□ 0.67
SHKBP1-208ENST00000595726 ADRA2BP18089 450 aa19.22■□□□□ 0.67
SHKBP1-208ENST00000595726 RASSF7Q02833 373 aa19.22■□□□□ 0.67
SHKBP1-208ENST00000595726 DDR1Q08345 913 aa19.22■□□□□ 0.67
SHKBP1-208ENST00000595726 FKBP8Q14318 412 aa19.22■□□□□ 0.67
SHKBP1-208ENST00000595726 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.22■□□□□ 0.67
SHKBP1-208ENST00000595726 KIF24Q5T7B8 1368 aa19.21■□□□□ 0.67
SHKBP1-208ENST00000595726 NCAPD2Q15021 1401 aa19.21■□□□□ 0.67
SHKBP1-208ENST00000595726 ARFGEF1Q9Y6D6 1849 aa19.21■□□□□ 0.67
SHKBP1-208ENST00000595726 CNTNAP4Q9C0A0 1308 aa19.2■□□□□ 0.66
SHKBP1-208ENST00000595726 VEGFAP15692 232 aaPredicted RBP19.19■□□□□ 0.66
SHKBP1-208ENST00000595726 CARD14Q9BXL6 1004 aa19.19■□□□□ 0.66
SHKBP1-208ENST00000595726 TONSLQ96HA7 1378 aa19.19■□□□□ 0.66
SHKBP1-208ENST00000595726 PTCD1O75127 700 aaKnown RBP19.17■□□□□ 0.66
SHKBP1-208ENST00000595726 TNRC6CQ9HCJ0 1690 aaKnown RBP19.17■□□□□ 0.66
SHKBP1-208ENST00000595726 SBF1O95248 1867 aa19.16■□□□□ 0.66
SHKBP1-208ENST00000595726 GLTPD2A6NH11 291 aa19.16■□□□□ 0.66
SHKBP1-208ENST00000595726 WASHC2AQ641Q2 1341 aa19.16■□□□□ 0.66
SHKBP1-208ENST00000595726 ERVV-2B6SEH9 535 aa19.15■□□□□ 0.66
SHKBP1-208ENST00000595726 CRKLP46109 303 aaKnown RBP19.15■□□□□ 0.66
SHKBP1-208ENST00000595726 MYH14Q7Z406 1995 aaKnown RBP19.15■□□□□ 0.66
SHKBP1-208ENST00000595726 POLRMTO00411 1230 aaKnown RBP19.14■□□□□ 0.65
SHKBP1-208ENST00000595726 USP42Q9H9J4 1324 aaKnown RBP19.14■□□□□ 0.65
SHKBP1-208ENST00000595726 POTECB2RU33 542 aa19.13■□□□□ 0.65
SHKBP1-208ENST00000595726 SLC24A1O60721 1099 aa19.13■□□□□ 0.65
SHKBP1-208ENST00000595726 LMNB1P20700 586 aa19.13■□□□□ 0.65
SHKBP1-208ENST00000595726 TM4SF1P30408 202 aa19.13■□□□□ 0.65
SHKBP1-208ENST00000595726 MKRN1Q9UHC7 482 aaKnown RBP19.13■□□□□ 0.65
SHKBP1-208ENST00000595726 COL5A3P25940 1745 aaPredicted RBP19.12■□□□□ 0.65
SHKBP1-208ENST00000595726 CABP4P57796 275 aa19.12■□□□□ 0.65
SHKBP1-208ENST00000595726 KIF20BQ96Q89 1820 aa19.11■□□□□ 0.65
SHKBP1-208ENST00000595726 KDM6AO15550 1401 aaPredicted RBP19.11■□□□□ 0.65
SHKBP1-208ENST00000595726 EIF4A2Q14240 407 aaKnown RBP19.11■□□□□ 0.65
SHKBP1-208ENST00000595726 POLKQ9UBT6 870 aa19.11■□□□□ 0.65
SHKBP1-208ENST00000595726 ZC3H4Q9UPT8 1303 aaKnown RBP19.1■□□□□ 0.65
SHKBP1-208ENST00000595726 FOXN1O15353 648 aa19.1■□□□□ 0.65
SHKBP1-208ENST00000595726 INTS5Q6P9B9 1019 aaKnown RBP19.1■□□□□ 0.65
SHKBP1-208ENST00000595726 SLC34A2O95436 690 aa19.09■□□□□ 0.65
SHKBP1-208ENST00000595726 USPL1Q5W0Q7 1092 aa19.09■□□□□ 0.65
SHKBP1-208ENST00000595726 ZNF831Q5JPB2 1677 aa19.08■□□□□ 0.65
SHKBP1-208ENST00000595726 NFATC2IPQ8NCF5 419 aa19.08■□□□□ 0.64
SHKBP1-208ENST00000595726 NFKBIEO00221 500 aa19.07■□□□□ 0.64
SHKBP1-208ENST00000595726 TNNT2P45379 298 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-208ENST00000595726 ZNF530Q6P9A1 599 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-208ENST00000595726 HSP90AB1P08238 724 aaKnown RBP19.06■□□□□ 0.64
SHKBP1-208ENST00000595726 ZPR1O75312 459 aa19.05■□□□□ 0.64
SHKBP1-208ENST00000595726 POTEIP0CG38 1075 aa19.05■□□□□ 0.64
SHKBP1-208ENST00000595726 POTEJP0CG39 1038 aa19.05■□□□□ 0.64
SHKBP1-208ENST00000595726 MTHFSP49914 203 aa19.05■□□□□ 0.64
SHKBP1-208ENST00000595726 NFIXQ14938 502 aa19.05■□□□□ 0.64
SHKBP1-208ENST00000595726 PLEKHO1Q53GL0 409 aaPredicted RBP19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms