RNA–Protein interactions for RNA: ENST00000586796.1

RETREG3-204, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 2

Gene RETREG3, Length 576 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-204ENST00000586796 TEFQ10587 303 aa28.34■■■□□ 2.13
RETREG3-204ENST00000586796 LRRC4BQ9NT99 713 aa28.34■■■□□ 2.13
RETREG3-204ENST00000586796 CCNL1Q9UK58 526 aaPredicted RBP28.34■■■□□ 2.13
RETREG3-204ENST00000586796 RRP7AQ9Y3A4 280 aaKnown RBP28.34■■■□□ 2.13
RETREG3-204ENST00000586796 NEUROD2Q15784 382 aa28.33■■■□□ 2.13
RETREG3-204ENST00000586796 RIPK4P57078 832 aa28.32■■■□□ 2.12
RETREG3-204ENST00000586796 NBPF14Q5TI25 921 aa28.32■■■□□ 2.12
RETREG3-204ENST00000586796 NUP188Q5SRE5 1749 aa28.32■■■□□ 2.12
RETREG3-204ENST00000586796 TMPOP42166 694 aaKnown RBP28.31■■■□□ 2.12
RETREG3-204ENST00000586796 SLC27A3Q5K4L6 730 aa28.31■■■□□ 2.12
RETREG3-204ENST00000586796 HTATSF1O43719 755 aaKnown RBP28.3■■■□□ 2.12
RETREG3-204ENST00000586796 RBM42Q9BTD8 480 aaKnown RBP28.3■■■□□ 2.12
RETREG3-204ENST00000586796 ADAMTS7Q9UKP4 1686 aa28.29■■■□□ 2.12
RETREG3-204ENST00000586796 PSDA5PKW4 1024 aaPredicted RBP28.29■■■□□ 2.12
RETREG3-204ENST00000586796 SLC39A6Q13433 755 aa28.29■■■□□ 2.12
RETREG3-204ENST00000586796 FAM9BQ8IZU0 186 aa28.29■■■□□ 2.12
RETREG3-204ENST00000586796 VIRMAQ69YN4 1812 aaKnown RBP28.29■■■□□ 2.12
RETREG3-204ENST00000586796 MRC1P22897 1456 aa28.28■■■□□ 2.12
RETREG3-204ENST00000586796 CEMIPQ8WUJ3 1361 aa28.27■■■□□ 2.12
RETREG3-204ENST00000586796 LY75O60449 1722 aa28.27■■■□□ 2.12
RETREG3-204ENST00000586796 LOC102724428A0A0B4J2F2 783 aa28.27■■■□□ 2.12
RETREG3-204ENST00000586796 PTCD1O75127 700 aaKnown RBP28.27■■■□□ 2.12
RETREG3-204ENST00000586796 SIK1P57059 783 aa28.27■■■□□ 2.12
RETREG3-204ENST00000586796 R3HDM1Q15032 1099 aaKnown RBP28.27■■■□□ 2.12
RETREG3-204ENST00000586796 THUMPD2Q9BTF0 503 aaKnown RBP28.27■■■□□ 2.12
RETREG3-204ENST00000586796 ANO8Q9HCE9 1232 aaPredicted RBP28.27■■■□□ 2.12
RETREG3-204ENST00000586796 SENP3-EIF4A1A0A087X0R7 540 aa28.26■■■□□ 2.11
RETREG3-204ENST00000586796 APAF1O14727 1248 aa28.25■■■□□ 2.11
RETREG3-204ENST00000586796 ATP6V1AP38606 617 aa28.25■■■□□ 2.11
RETREG3-204ENST00000586796 STK32BQ9NY57 414 aa28.25■■■□□ 2.11
RETREG3-204ENST00000586796 DLG5Q8TDM6 1919 aa28.24■■■□□ 2.11
RETREG3-204ENST00000586796 BTBD11A6QL63 1104 aa28.23■■■□□ 2.11
RETREG3-204ENST00000586796 MIER1Q8N108 512 aa28.23■■■□□ 2.11
RETREG3-204ENST00000586796 LMOD3Q0VAK6 560 aa28.22■■■□□ 2.11
RETREG3-204ENST00000586796 TTC5Q8N0Z6 440 aa28.22■■■□□ 2.11
RETREG3-204ENST00000586796 SLC4A9Q96Q91 983 aa28.21■■■□□ 2.11
RETREG3-204ENST00000586796 ITPK1Q13572 414 aa28.2■■■□□ 2.1
RETREG3-204ENST00000586796 SLC15A2Q16348 729 aa28.2■■■□□ 2.1
RETREG3-204ENST00000586796 ZNF827Q17R98 1081 aa28.2■■■□□ 2.1
RETREG3-204ENST00000586796 CCER2I3L3R5 266 aa28.19■■■□□ 2.1
RETREG3-204ENST00000586796 MIS18AQ9NYP9 233 aa28.19■■■□□ 2.1
RETREG3-204ENST00000586796 TAF7Q15545 349 aaPredicted RBP28.18■■■□□ 2.1
RETREG3-204ENST00000586796 ZNF790Q6PG37 636 aa28.18■■■□□ 2.1
RETREG3-204ENST00000586796 LINC00116Q8NCU8 138 aa28.18■■■□□ 2.1
RETREG3-204ENST00000586796 TRIM35Q9UPQ4 493 aa28.18■■■□□ 2.1
RETREG3-204ENST00000586796 KCNQ3O43525 872 aa28.17■■■□□ 2.1
RETREG3-204ENST00000586796 AKT1S1Q96B36 256 aa28.17■■■□□ 2.1
RETREG3-204ENST00000586796 PAPPAQ13219 1627 aa28.17■■■□□ 2.1
RETREG3-204ENST00000586796 SIPA1L3O60292 1781 aaPredicted RBP28.16■■■□□ 2.1
RETREG3-204ENST00000586796 TFCP2L1Q9NZI6 479 aa28.15■■■□□ 2.1
RETREG3-204ENST00000586796 C5P01031 1676 aa28.14■■■□□ 2.1
RETREG3-204ENST00000586796 HMGB2P26583 209 aaKnown RBP28.13■■■□□ 2.09
RETREG3-204ENST00000586796 ZNF496Q96IT1 587 aaPredicted RBP28.13■■■□□ 2.09
RETREG3-204ENST00000586796 AK7Q96M32 723 aa28.13■■■□□ 2.09
RETREG3-204ENST00000586796 KCPQ6ZWJ8 1503 aa28.13■■■□□ 2.09
RETREG3-204ENST00000586796 DNAJC10Q8IXB1 793 aa28.12■■■□□ 2.09
RETREG3-204ENST00000586796 SALL2Q9Y467 1007 aaPredicted RBP28.12■■■□□ 2.09
RETREG3-204ENST00000586796 LAS1LQ9Y4W2 734 aaKnown RBP28.11■■■□□ 2.09
RETREG3-204ENST00000586796 FMNL2Q96PY5 1086 aa28.1■■■□□ 2.09
RETREG3-204ENST00000586796 PDGFDQ9GZP0 370 aaPredicted RBP28.1■■■□□ 2.09
RETREG3-204ENST00000586796 TAF1LQ8IZX4 1826 aa28.1■■■□□ 2.09
RETREG3-204ENST00000586796 C4BP0C0L5 1744 aa28.09■■■□□ 2.09
RETREG3-204ENST00000586796 TSPYL4Q9UJ04 414 aa28.09■■■□□ 2.09
RETREG3-204ENST00000586796 SMIM5Q71RC9 77 aa28.08■■■□□ 2.09
RETREG3-204ENST00000586796 GNPATO15228 680 aa28.07■■■□□ 2.08
RETREG3-204ENST00000586796 MSH5O43196 834 aa28.07■■■□□ 2.08
RETREG3-204ENST00000586796 VSIG10Q8N0Z9 540 aa28.07■■■□□ 2.08
RETREG3-204ENST00000586796 HEG1Q9ULI3 1381 aa28.07■■■□□ 2.08
RETREG3-204ENST00000586796 PHF14O94880 888 aa28.06■■■□□ 2.08
RETREG3-204ENST00000586796 PNPLA7Q6ZV29 1317 aa28.06■■■□□ 2.08
RETREG3-204ENST00000586796 UBR2Q8IWV8 1755 aa28.06■■■□□ 2.08
RETREG3-204ENST00000586796 CRKLP46109 303 aaKnown RBP28.05■■■□□ 2.08
RETREG3-204ENST00000586796 ZNF831Q5JPB2 1677 aa28.05■■■□□ 2.08
RETREG3-204ENST00000586796 TJP1Q07157 1748 aa28.04■■■□□ 2.08
RETREG3-204ENST00000586796 AMIGO3Q86WK7 504 aa28.04■■■□□ 2.08
RETREG3-204ENST00000586796 CNTNAP4Q9C0A0 1308 aa28.03■■■□□ 2.08
RETREG3-204ENST00000586796 PRAMEF22A3QJZ6 481 aa28.02■■■□□ 2.08
RETREG3-204ENST00000586796 CYP19A1P11511 503 aaPredicted RBP28.02■■■□□ 2.08
RETREG3-204ENST00000586796 RC3H1Q5TC82 1133 aaKnown RBP28.02■■■□□ 2.08
RETREG3-204ENST00000586796 COL23A1Q86Y22 540 aaPredicted RBP28.02■■■□□ 2.08
RETREG3-204ENST00000586796 COL5A3P25940 1745 aaPredicted RBP28.01■■■□□ 2.07
RETREG3-204ENST00000586796 ZBTB7AO95365 584 aa28.01■■■□□ 2.07
RETREG3-204ENST00000586796 EIF4A1P60842 406 aaKnown RBP28.01■■■□□ 2.07
RETREG3-204ENST00000586796 CALD1Q05682 793 aaKnown RBP28.01■■■□□ 2.07
RETREG3-204ENST00000586796 RTCBQ9Y3I0 505 aaKnown RBP28.01■■■□□ 2.07
RETREG3-204ENST00000586796 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28■■■□□ 2.07
RETREG3-204ENST00000586796 STARD3NLO95772 234 aa28■■■□□ 2.07
RETREG3-204ENST00000586796 SNRPA1P09661 255 aaKnown RBP28■■■□□ 2.07
RETREG3-204ENST00000586796 WWC1Q8IX03 1113 aa28■■■□□ 2.07
RETREG3-204ENST00000586796 TEX13AQ9BXU3 409 aaPredicted RBP28■■■□□ 2.07
RETREG3-204ENST00000586796 CCDC87Q9NVE4 849 aa28■■■□□ 2.07
RETREG3-204ENST00000586796 TUBGCP6Q96RT7 1819 aa27.99■■■□□ 2.07
RETREG3-204ENST00000586796 KDM3BQ7LBC6 1761 aa27.99■■■□□ 2.07
RETREG3-204ENST00000586796 CHL1O00533 1208 aa27.99■■■□□ 2.07
RETREG3-204ENST00000586796 CCDC27Q2M243 656 aa27.99■■■□□ 2.07
RETREG3-204ENST00000586796 INTS5Q6P9B9 1019 aaKnown RBP27.99■■■□□ 2.07
RETREG3-204ENST00000586796 BABAM1Q9NWV8 329 aa27.99■■■□□ 2.07
RETREG3-204ENST00000586796 USP16Q9Y5T5 823 aa27.99■■■□□ 2.07
RETREG3-204ENST00000586796 RPS6KA4O75676 772 aa27.98■■■□□ 2.07
RETREG3-204ENST00000586796 FLAD1Q8NFF5 587 aa27.98■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms