RNA–Protein interactions for RNA: ENST00000586385.5

BRCA1-225, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 781 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-225ENST00000586385 GPBP1L1Q9HC44 474 aaPredicted RBP16.49■□□□□ 0.23
BRCA1-225ENST00000586385 PXDNLA1KZ92 1463 aa16.48■□□□□ 0.23
BRCA1-225ENST00000586385 MMP10P09238 476 aa16.48■□□□□ 0.23
BRCA1-225ENST00000586385 TNNT2P45379 298 aaPredicted RBP16.47■□□□□ 0.23
BRCA1-225ENST00000586385 CICQ96RK0 1608 aaPredicted RBP16.47■□□□□ 0.23
BRCA1-225ENST00000586385 KDM6AO15550 1401 aaPredicted RBP16.46■□□□□ 0.23
BRCA1-225ENST00000586385 KIAA1551Q9HCM1 1747 aa16.46■□□□□ 0.23
BRCA1-225ENST00000586385 KIF3CO14782 793 aa16.46■□□□□ 0.23
BRCA1-225ENST00000586385 HSPA6P17066 643 aa16.45■□□□□ 0.22
BRCA1-225ENST00000586385 TRIM26Q12899 539 aaPredicted RBP16.45■□□□□ 0.22
BRCA1-225ENST00000586385 PLEKHG2Q9H7P9 1386 aa16.45■□□□□ 0.22
BRCA1-225ENST00000586385 C10orf71Q711Q0 1435 aa16.45■□□□□ 0.22
BRCA1-225ENST00000586385 ERVV-2B6SEH9 535 aa16.43■□□□□ 0.22
BRCA1-225ENST00000586385 RC3H1Q5TC82 1133 aaKnown RBP16.43■□□□□ 0.22
BRCA1-225ENST00000586385 IFFO2Q5TF58 517 aa16.43■□□□□ 0.22
BRCA1-225ENST00000586385 ARHGEF1Q92888 912 aaKnown RBP16.43■□□□□ 0.22
BRCA1-225ENST00000586385 A0A0G2JLW4 131 aa16.42■□□□□ 0.22
BRCA1-225ENST00000586385 GYS1P13807 737 aa16.42■□□□□ 0.22
BRCA1-225ENST00000586385 AEBP1Q8IUX7 1158 aa16.42■□□□□ 0.22
BRCA1-225ENST00000586385 DCAF5Q96JK2 942 aa16.42■□□□□ 0.22
BRCA1-225ENST00000586385 RBM42Q9BTD8 480 aaKnown RBP16.42■□□□□ 0.22
BRCA1-225ENST00000586385 TIMELESSQ9UNS1 1208 aa16.42■□□□□ 0.22
BRCA1-225ENST00000586385 RTCBQ9Y3I0 505 aaKnown RBP16.42■□□□□ 0.22
BRCA1-225ENST00000586385 KIF13BQ9NQT8 1826 aa16.42■□□□□ 0.22
BRCA1-225ENST00000586385 CNTNAP4Q9C0A0 1308 aa16.42■□□□□ 0.22
BRCA1-225ENST00000586385 ZNF831Q5JPB2 1677 aa16.41■□□□□ 0.22
BRCA1-225ENST00000586385 TRAPPC3LQ5T215 181 aa16.41■□□□□ 0.22
BRCA1-225ENST00000586385 POLR3GLQ9BT43 218 aa16.41■□□□□ 0.22
BRCA1-225ENST00000586385 RPS6KA4O75676 772 aa16.4■□□□□ 0.22
BRCA1-225ENST00000586385 DPEP1P16444 411 aa16.4■□□□□ 0.22
BRCA1-225ENST00000586385 KCNA3P22001 575 aa16.4■□□□□ 0.22
BRCA1-225ENST00000586385 TGFB2P61812 414 aa16.4■□□□□ 0.22
BRCA1-225ENST00000586385 ZNF530Q6P9A1 599 aaPredicted RBP16.4■□□□□ 0.22
BRCA1-225ENST00000586385 NLGN1Q8N2Q7 840 aa16.4■□□□□ 0.22
BRCA1-225ENST00000586385 PANK3Q9H999 370 aa16.4■□□□□ 0.22
BRCA1-225ENST00000586385 COL5A3P25940 1745 aaPredicted RBP16.39■□□□□ 0.21
BRCA1-225ENST00000586385 ADRA2BP18089 450 aa16.39■□□□□ 0.21
BRCA1-225ENST00000586385 BCS1LQ9Y276 419 aa16.39■□□□□ 0.21
BRCA1-225ENST00000586385 HSP90AB1P08238 724 aaKnown RBP16.38■□□□□ 0.21
BRCA1-225ENST00000586385 PLEKHO1Q53GL0 409 aaPredicted RBP16.38■□□□□ 0.21
BRCA1-225ENST00000586385 N4BP2Q86UW6 1770 aaPredicted RBP16.38■□□□□ 0.21
BRCA1-225ENST00000586385 C4AP0C0L4 1744 aa16.37■□□□□ 0.21
BRCA1-225ENST00000586385 MYH14Q7Z406 1995 aaKnown RBP16.37■□□□□ 0.21
BRCA1-225ENST00000586385 HSPA5P11021 654 aaKnown RBP16.37■□□□□ 0.21
BRCA1-225ENST00000586385 CABP4P57796 275 aa16.37■□□□□ 0.21
BRCA1-225ENST00000586385 SRP68Q9UHB9 627 aaKnown RBP16.37■□□□□ 0.21
BRCA1-225ENST00000586385 PTCD1O75127 700 aaKnown RBP16.36■□□□□ 0.21
BRCA1-225ENST00000586385 DDR1Q08345 913 aa16.36■□□□□ 0.21
BRCA1-225ENST00000586385 RFC4P35249 363 aa16.35■□□□□ 0.21
BRCA1-225ENST00000586385 CRKLP46109 303 aaKnown RBP16.35■□□□□ 0.21
BRCA1-225ENST00000586385 FKBP8Q14318 412 aa16.35■□□□□ 0.21
BRCA1-225ENST00000586385 AMOTQ4VCS5 1084 aa16.35■□□□□ 0.21
BRCA1-225ENST00000586385 NFATC2IPQ8NCF5 419 aa16.35■□□□□ 0.21
BRCA1-225ENST00000586385 CCDC87Q9NVE4 849 aa16.35■□□□□ 0.21
BRCA1-225ENST00000586385 IL13P35225 146 aa16.34■□□□□ 0.21
BRCA1-225ENST00000586385 MTHFSP49914 203 aa16.34■□□□□ 0.21
BRCA1-225ENST00000586385 INTS5Q6P9B9 1019 aaKnown RBP16.34■□□□□ 0.21
BRCA1-225ENST00000586385 ARHGAP27Q6ZUM4 889 aa16.34■□□□□ 0.21
BRCA1-225ENST00000586385 NMRK2Q9NPI5 230 aa16.34■□□□□ 0.21
BRCA1-225ENST00000586385 USP42Q9H9J4 1324 aaKnown RBP16.34■□□□□ 0.21
BRCA1-225ENST00000586385 FCHSD2O94868 740 aa16.33■□□□□ 0.2
BRCA1-225ENST00000586385 SULT6B1Q6IMI4 303 aa16.33■□□□□ 0.2
BRCA1-225ENST00000586385 PARP3Q9Y6F1 533 aa16.33■□□□□ 0.2
BRCA1-225ENST00000586385 CLSPNQ9HAW4 1339 aa16.33■□□□□ 0.2
BRCA1-225ENST00000586385 BRCA1P38398 1863 aaKnown RBP16.33■□□□□ 0.2
BRCA1-225ENST00000586385 EIF4G2P78344 907 aaKnown RBP eCLIP16.32■□□□□ 0.2
BRCA1-225ENST00000586385 TJP1Q07157 1748 aa16.32■□□□□ 0.2
BRCA1-225ENST00000586385 DNAJC5GQ8N7S2 189 aa16.32■□□□□ 0.2
BRCA1-225ENST00000586385 ADAMTS7Q9UKP4 1686 aa16.32■□□□□ 0.2
BRCA1-225ENST00000586385 C9orf131Q5VYM1 1079 aa16.31■□□□□ 0.2
BRCA1-225ENST00000586385 MORC1Q86VD1 984 aa16.31■□□□□ 0.2
BRCA1-225ENST00000586385 TOMM70O94826 608 aa16.3■□□□□ 0.2
BRCA1-225ENST00000586385 TM4SF1P30408 202 aa16.3■□□□□ 0.2
BRCA1-225ENST00000586385 CHRNA5P30532 468 aa16.3■□□□□ 0.2
BRCA1-225ENST00000586385 C1orf141Q5JVX7 400 aa16.3■□□□□ 0.2
BRCA1-225ENST00000586385 DNAJC10Q8IXB1 793 aa16.3■□□□□ 0.2
BRCA1-225ENST00000586385 POLRMTO00411 1230 aaKnown RBP16.29■□□□□ 0.2
BRCA1-225ENST00000586385 AMER1Q5JTC6 1135 aaPredicted RBP16.29■□□□□ 0.2
BRCA1-225ENST00000586385 PCGF6Q9BYE7 350 aa16.29■□□□□ 0.2
BRCA1-225ENST00000586385 LGR6Q9HBX8 967 aa16.29■□□□□ 0.2
BRCA1-225ENST00000586385 SOS1Q07889 1333 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-225ENST00000586385 APLP1P51693 650 aa16.28■□□□□ 0.2
BRCA1-225ENST00000586385 PIM2Q9P1W9 311 aa16.28■□□□□ 0.2
BRCA1-225ENST00000586385 SLC52A2Q9HAB3 445 aa16.27■□□□□ 0.2
BRCA1-225ENST00000586385 MRC1P22897 1456 aa16.27■□□□□ 0.19
BRCA1-225ENST00000586385 KCPQ6ZWJ8 1503 aa16.26■□□□□ 0.19
BRCA1-225ENST00000586385 CYP19A1P11511 503 aaPredicted RBP16.26■□□□□ 0.19
BRCA1-225ENST00000586385 SLC39A6Q13433 755 aa16.26■□□□□ 0.19
BRCA1-225ENST00000586385 DALRD3Q5D0E6 543 aaKnown RBP16.26■□□□□ 0.19
BRCA1-225ENST00000586385 AKAP4Q5JQC9 854 aa16.26■□□□□ 0.19
BRCA1-225ENST00000586385 USPL1Q5W0Q7 1092 aa16.26■□□□□ 0.19
BRCA1-225ENST00000586385 ARFGEF1Q9Y6D6 1849 aa16.25■□□□□ 0.19
BRCA1-225ENST00000586385 RNMTO43148 476 aaKnown RBP16.25■□□□□ 0.19
BRCA1-225ENST00000586385 PRELPP51888 382 aa16.25■□□□□ 0.19
BRCA1-225ENST00000586385 RBM46Q8TBY0 533 aaKnown RBP16.25■□□□□ 0.19
BRCA1-225ENST00000586385 BCL2L12Q9HB09 334 aa16.25■□□□□ 0.19
BRCA1-225ENST00000586385 SCN11AQ9UI33 1791 aa16.25■□□□□ 0.19
BRCA1-225ENST00000586385 HTRA3P83110 453 aa16.24■□□□□ 0.19
BRCA1-225ENST00000586385 NFIXQ14938 502 aa16.24■□□□□ 0.19
BRCA1-225ENST00000586385 RNF181Q9P0P0 153 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms