RNA–Protein interactions for RNA: ENST00000576613.5

CTDNEP1-212, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3

Gene CTDNEP1, Length 606 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-212ENST00000576613 ITPK1Q13572 414 aa16.11■□□□□ 0.17
CTDNEP1-212ENST00000576613 ZNF831Q5JPB2 1677 aa16.11■□□□□ 0.17
CTDNEP1-212ENST00000576613 MMP10P09238 476 aa16.1■□□□□ 0.17
CTDNEP1-212ENST00000576613 ATG3Q9NT62 314 aa16.1■□□□□ 0.17
CTDNEP1-212ENST00000576613 RTCBQ9Y3I0 505 aaKnown RBP16.09■□□□□ 0.17
CTDNEP1-212ENST00000576613 PXDNLA1KZ92 1463 aa16.09■□□□□ 0.17
CTDNEP1-212ENST00000576613 TGFB2P61812 414 aa16.08■□□□□ 0.16
CTDNEP1-212ENST00000576613 TRAPPC3LQ5T215 181 aa16.08■□□□□ 0.16
CTDNEP1-212ENST00000576613 NLGN1Q8N2Q7 840 aa16.08■□□□□ 0.16
CTDNEP1-212ENST00000576613 POLKQ9UBT6 870 aa16.08■□□□□ 0.16
CTDNEP1-212ENST00000576613 KDRP35968 1356 aa16.08■□□□□ 0.16
CTDNEP1-212ENST00000576613 COL5A3P25940 1745 aaPredicted RBP16.08■□□□□ 0.16
CTDNEP1-212ENST00000576613 KIAA1551Q9HCM1 1747 aa16.08■□□□□ 0.16
CTDNEP1-212ENST00000576613 N4BP2Q86UW6 1770 aaPredicted RBP16.08■□□□□ 0.16
CTDNEP1-212ENST00000576613 HSP90AB1P08238 724 aaKnown RBP16.07■□□□□ 0.16
CTDNEP1-212ENST00000576613 ADRA2BP18089 450 aa16.07■□□□□ 0.16
CTDNEP1-212ENST00000576613 C10orf71Q711Q0 1435 aa16.06■□□□□ 0.16
CTDNEP1-212ENST00000576613 ERVV-2B6SEH9 535 aa16.06■□□□□ 0.16
CTDNEP1-212ENST00000576613 EIF4A2Q14240 407 aaKnown RBP16.06■□□□□ 0.16
CTDNEP1-212ENST00000576613 C4AP0C0L4 1744 aa16.05■□□□□ 0.16
CTDNEP1-212ENST00000576613 KIF3CO14782 793 aa16.05■□□□□ 0.16
CTDNEP1-212ENST00000576613 DCAF5Q96JK2 942 aa16.05■□□□□ 0.16
CTDNEP1-212ENST00000576613 RBM42Q9BTD8 480 aaKnown RBP16.05■□□□□ 0.16
CTDNEP1-212ENST00000576613 CCDC87Q9NVE4 849 aa16.05■□□□□ 0.16
CTDNEP1-212ENST00000576613 BCS1LQ9Y276 419 aa16.05■□□□□ 0.16
CTDNEP1-212ENST00000576613 CNTNAP4Q9C0A0 1308 aa16.04■□□□□ 0.16
CTDNEP1-212ENST00000576613 RFC4P35249 363 aa16.04■□□□□ 0.16
CTDNEP1-212ENST00000576613 TNNT2P45379 298 aaPredicted RBP16.04■□□□□ 0.16
CTDNEP1-212ENST00000576613 RC3H1Q5TC82 1133 aaKnown RBP16.04■□□□□ 0.16
CTDNEP1-212ENST00000576613 A0A0G2JLW4 131 aa16.03■□□□□ 0.16
CTDNEP1-212ENST00000576613 PLEKHO1Q53GL0 409 aaPredicted RBP16.03■□□□□ 0.16
CTDNEP1-212ENST00000576613 POLR3GLQ9BT43 218 aa16.03■□□□□ 0.16
CTDNEP1-212ENST00000576613 TIMELESSQ9UNS1 1208 aa16.03■□□□□ 0.16
CTDNEP1-212ENST00000576613 BRCA1P38398 1863 aaKnown RBP16.03■□□□□ 0.16
CTDNEP1-212ENST00000576613 TOMM70O94826 608 aa16.02■□□□□ 0.16
CTDNEP1-212ENST00000576613 APLP1P51693 650 aa16.02■□□□□ 0.16
CTDNEP1-212ENST00000576613 ARHGEF1Q92888 912 aaKnown RBP16.02■□□□□ 0.16
CTDNEP1-212ENST00000576613 SLC4A9Q96Q91 983 aa16.02■□□□□ 0.16
CTDNEP1-212ENST00000576613 PARP3Q9Y6F1 533 aa16.02■□□□□ 0.16
CTDNEP1-212ENST00000576613 RPS6KA4O75676 772 aa16.01■□□□□ 0.15
CTDNEP1-212ENST00000576613 GYS1P13807 737 aa16.01■□□□□ 0.15
CTDNEP1-212ENST00000576613 CABP4P57796 275 aa16.01■□□□□ 0.15
CTDNEP1-212ENST00000576613 AMOTQ4VCS5 1084 aa16.01■□□□□ 0.15
CTDNEP1-212ENST00000576613 ARHGAP27Q6ZUM4 889 aa16.01■□□□□ 0.15
CTDNEP1-212ENST00000576613 FCHSD2O94868 740 aa16■□□□□ 0.15
CTDNEP1-212ENST00000576613 DPEP1P16444 411 aa16■□□□□ 0.15
CTDNEP1-212ENST00000576613 ZNF530Q6P9A1 599 aaPredicted RBP16■□□□□ 0.15
CTDNEP1-212ENST00000576613 ARFGEF1Q9Y6D6 1849 aa16■□□□□ 0.15
CTDNEP1-212ENST00000576613 KDM6AO15550 1401 aaPredicted RBP16■□□□□ 0.15
CTDNEP1-212ENST00000576613 C1orf141Q5JVX7 400 aa15.99■□□□□ 0.15
CTDNEP1-212ENST00000576613 MYH14Q7Z406 1995 aaKnown RBP15.98■□□□□ 0.15
CTDNEP1-212ENST00000576613 MTHFSP49914 203 aa15.98■□□□□ 0.15
CTDNEP1-212ENST00000576613 TRIM26Q12899 539 aaPredicted RBP15.98■□□□□ 0.15
CTDNEP1-212ENST00000576613 PTCD1O75127 700 aaKnown RBP15.97■□□□□ 0.15
CTDNEP1-212ENST00000576613 C16orf71Q8IYS4 520 aaPredicted RBP15.96■□□□□ 0.15
CTDNEP1-212ENST00000576613 PIM2Q9P1W9 311 aa15.96■□□□□ 0.15
CTDNEP1-212ENST00000576613 TJP1Q07157 1748 aa15.96■□□□□ 0.15
CTDNEP1-212ENST00000576613 CRKLP46109 303 aaKnown RBP15.95■□□□□ 0.14
CTDNEP1-212ENST00000576613 NMRK2Q9NPI5 230 aa15.95■□□□□ 0.14
CTDNEP1-212ENST00000576613 USP42Q9H9J4 1324 aaKnown RBP15.94■□□□□ 0.14
CTDNEP1-212ENST00000576613 WDR90Q96KV7 1748 aa15.94■□□□□ 0.14
CTDNEP1-212ENST00000576613 KCNA3P22001 575 aa15.94■□□□□ 0.14
CTDNEP1-212ENST00000576613 DALRD3Q5D0E6 543 aaKnown RBP15.94■□□□□ 0.14
CTDNEP1-212ENST00000576613 C9orf131Q5VYM1 1079 aa15.94■□□□□ 0.14
CTDNEP1-212ENST00000576613 NFATC2IPQ8NCF5 419 aa15.94■□□□□ 0.14
CTDNEP1-212ENST00000576613 SCN11AQ9UI33 1791 aa15.94■□□□□ 0.14
CTDNEP1-212ENST00000576613 KDM2BQ8NHM5 1336 aa15.94■□□□□ 0.14
CTDNEP1-212ENST00000576613 CLSPNQ9HAW4 1339 aa15.94■□□□□ 0.14
CTDNEP1-212ENST00000576613 MORC1Q86VD1 984 aa15.93■□□□□ 0.14
CTDNEP1-212ENST00000576613 AEBP1Q8IUX7 1158 aa15.93■□□□□ 0.14
CTDNEP1-212ENST00000576613 RBM46Q8TBY0 533 aaKnown RBP15.93■□□□□ 0.14
CTDNEP1-212ENST00000576613 PANK3Q9H999 370 aa15.93■□□□□ 0.14
CTDNEP1-212ENST00000576613 EIF4G2P78344 907 aaKnown RBP eCLIP15.92■□□□□ 0.14
CTDNEP1-212ENST00000576613 FKBP8Q14318 412 aa15.92■□□□□ 0.14
CTDNEP1-212ENST00000576613 SULT6B1Q6IMI4 303 aa15.92■□□□□ 0.14
CTDNEP1-212ENST00000576613 SRP68Q9UHB9 627 aaKnown RBP15.92■□□□□ 0.14
CTDNEP1-212ENST00000576613 TNRC6CQ9HCJ0 1690 aaKnown RBP15.92■□□□□ 0.14
CTDNEP1-212ENST00000576613 DDR1Q08345 913 aa15.91■□□□□ 0.14
CTDNEP1-212ENST00000576613 DNAJC5GQ8N7S2 189 aa15.91■□□□□ 0.14
CTDNEP1-212ENST00000576613 KCPQ6ZWJ8 1503 aa15.9■□□□□ 0.14
CTDNEP1-212ENST00000576613 ADAMTS7Q9UKP4 1686 aa15.9■□□□□ 0.14
CTDNEP1-212ENST00000576613 ZPR1O75312 459 aa15.9■□□□□ 0.14
CTDNEP1-212ENST00000576613 FSTL1Q12841 308 aa15.9■□□□□ 0.14
CTDNEP1-212ENST00000576613 RNF181Q9P0P0 153 aa15.9■□□□□ 0.14
CTDNEP1-212ENST00000576613 SBF1O95248 1867 aa15.88■□□□□ 0.13
CTDNEP1-212ENST00000576613 POLRMTO00411 1230 aaKnown RBP15.88■□□□□ 0.13
CTDNEP1-212ENST00000576613 CHRNA5P30532 468 aa15.88■□□□□ 0.13
CTDNEP1-212ENST00000576613 AKAP4Q5JQC9 854 aa15.88■□□□□ 0.13
CTDNEP1-212ENST00000576613 INTS5Q6P9B9 1019 aaKnown RBP15.88■□□□□ 0.13
CTDNEP1-212ENST00000576613 MRC1P22897 1456 aa15.87■□□□□ 0.13
CTDNEP1-212ENST00000576613 HSPA5P11021 654 aaKnown RBP15.87■□□□□ 0.13
CTDNEP1-212ENST00000576613 TM4SF1P30408 202 aa15.87■□□□□ 0.13
CTDNEP1-212ENST00000576613 SLC52A2Q9HAB3 445 aa15.87■□□□□ 0.13
CTDNEP1-212ENST00000576613 KNSTRNQ9Y448 316 aa15.87■□□□□ 0.13
CTDNEP1-212ENST00000576613 ZC3H4Q9UPT8 1303 aaKnown RBP15.87■□□□□ 0.13
CTDNEP1-212ENST00000576613 VIRMAQ69YN4 1812 aaKnown RBP15.87■□□□□ 0.13
CTDNEP1-212ENST00000576613 IL13P35225 146 aa15.86■□□□□ 0.13
CTDNEP1-212ENST00000576613 USPL1Q5W0Q7 1092 aa15.86■□□□□ 0.13
CTDNEP1-212ENST00000576613 DNAJC10Q8IXB1 793 aa15.86■□□□□ 0.13
CTDNEP1-212ENST00000576613 AFDNP55196 1824 aaKnown RBP15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms