RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ZNF831Q5JPB2 1677 aa28.96■■■□□ 2.23
VPS53-216ENST00000574029 KDRP35968 1356 aa28.93■■■□□ 2.22
VPS53-216ENST00000574029 ERVV-2B6SEH9 535 aa28.93■■■□□ 2.22
VPS53-216ENST00000574029 GNPATO15228 680 aa28.93■■■□□ 2.22
VPS53-216ENST00000574029 GIGYF1O75420 1035 aaPredicted RBP28.92■■■□□ 2.22
VPS53-216ENST00000574029 DCAF5Q96JK2 942 aa28.92■■■□□ 2.22
VPS53-216ENST00000574029 HSP90AB1P08238 724 aaKnown RBP28.91■■■□□ 2.22
VPS53-216ENST00000574029 PLEKHO1Q53GL0 409 aaPredicted RBP28.91■■■□□ 2.22
VPS53-216ENST00000574029 SENP3-EIF4A1A0A087X0R7 540 aa28.9■■■□□ 2.22
VPS53-216ENST00000574029 COL5A3P25940 1745 aaPredicted RBP28.89■■■□□ 2.21
VPS53-216ENST00000574029 KDM6AO15550 1401 aaPredicted RBP28.88■■■□□ 2.21
VPS53-216ENST00000574029 AMOTQ4VCS5 1084 aa28.88■■■□□ 2.21
VPS53-216ENST00000574029 MORC1Q86VD1 984 aa28.88■■■□□ 2.21
VPS53-216ENST00000574029 SLC4A9Q96Q91 983 aa28.88■■■□□ 2.21
VPS53-216ENST00000574029 ZNF530Q6P9A1 599 aaPredicted RBP28.86■■■□□ 2.21
VPS53-216ENST00000574029 ATP10DQ9P241 1426 aa28.85■■■□□ 2.21
VPS53-216ENST00000574029 RC3H1Q5TC82 1133 aaKnown RBP28.84■■■□□ 2.21
VPS53-216ENST00000574029 AEBP1Q8IUX7 1158 aa28.84■■■□□ 2.21
VPS53-216ENST00000574029 RBM42Q9BTD8 480 aaKnown RBP28.84■■■□□ 2.21
VPS53-216ENST00000574029 RTCBQ9Y3I0 505 aaKnown RBP28.84■■■□□ 2.21
VPS53-216ENST00000574029 KIF13BQ9NQT8 1826 aa28.83■■■□□ 2.21
VPS53-216ENST00000574029 CABP4P57796 275 aa28.83■■■□□ 2.21
VPS53-216ENST00000574029 TRAPPC3LQ5T215 181 aa28.83■■■□□ 2.21
VPS53-216ENST00000574029 MMP10P09238 476 aa28.82■■■□□ 2.2
VPS53-216ENST00000574029 CCER1Q8TC90 406 aaPredicted RBP28.82■■■□□ 2.2
VPS53-216ENST00000574029 KNSTRNQ9Y448 316 aa28.82■■■□□ 2.2
VPS53-216ENST00000574029 ADCY9O60503 1353 aa28.82■■■□□ 2.2
VPS53-216ENST00000574029 CNTNAP4Q9C0A0 1308 aa28.81■■■□□ 2.2
VPS53-216ENST00000574029 ADRA2BP18089 450 aa28.8■■■□□ 2.2
VPS53-216ENST00000574029 MTHFSP49914 203 aa28.8■■■□□ 2.2
VPS53-216ENST00000574029 KIAA1551Q9HCM1 1747 aa28.8■■■□□ 2.2
VPS53-216ENST00000574029 C1orf141Q5JVX7 400 aa28.79■■■□□ 2.2
VPS53-216ENST00000574029 WWC3Q9ULE0 1092 aa28.79■■■□□ 2.2
VPS53-216ENST00000574029 IL13P35225 146 aa28.78■■■□□ 2.2
VPS53-216ENST00000574029 SULT6B1Q6IMI4 303 aa28.78■■■□□ 2.2
VPS53-216ENST00000574029 NLGN1Q8N2Q7 840 aa28.78■■■□□ 2.2
VPS53-216ENST00000574029 ARHGEF1Q92888 912 aaKnown RBP28.78■■■□□ 2.2
VPS53-216ENST00000574029 CICQ96RK0 1608 aaPredicted RBP28.78■■■□□ 2.2
VPS53-216ENST00000574029 MYH14Q7Z406 1995 aaKnown RBP28.78■■■□□ 2.2
VPS53-216ENST00000574029 RPS6KA4O75676 772 aa28.77■■■□□ 2.2
VPS53-216ENST00000574029 SCN11AQ9UI33 1791 aa28.77■■■□□ 2.2
VPS53-216ENST00000574029 C4AP0C0L4 1744 aa28.77■■■□□ 2.2
VPS53-216ENST00000574029 PXDNLA1KZ92 1463 aa28.76■■■□□ 2.19
VPS53-216ENST00000574029 AMER1Q5JTC6 1135 aaPredicted RBP28.75■■■□□ 2.19
VPS53-216ENST00000574029 NFATC2IPQ8NCF5 419 aa28.75■■■□□ 2.19
VPS53-216ENST00000574029 GYS1P13807 737 aa28.74■■■□□ 2.19
VPS53-216ENST00000574029 N4BP2Q86UW6 1770 aaPredicted RBP28.74■■■□□ 2.19
VPS53-216ENST00000574029 RFC4P35249 363 aa28.73■■■□□ 2.19
VPS53-216ENST00000574029 TGFB2P61812 414 aa28.73■■■□□ 2.19
VPS53-216ENST00000574029 TJP1Q07157 1748 aa28.73■■■□□ 2.19
VPS53-216ENST00000574029 C10orf71Q711Q0 1435 aa28.73■■■□□ 2.19
VPS53-216ENST00000574029 GPBP1L1Q9HC44 474 aaPredicted RBP28.73■■■□□ 2.19
VPS53-216ENST00000574029 PTCD1O75127 700 aaKnown RBP28.72■■■□□ 2.19
VPS53-216ENST00000574029 KIF7Q2M1P5 1343 aa28.69■■■□□ 2.18
VPS53-216ENST00000574029 CRKLP46109 303 aaKnown RBP28.68■■■□□ 2.18
VPS53-216ENST00000574029 AKAP4Q5JQC9 854 aa28.68■■■□□ 2.18
VPS53-216ENST00000574029 CCDC87Q9NVE4 849 aa28.68■■■□□ 2.18
VPS53-216ENST00000574029 BRCA1P38398 1863 aaKnown RBP28.67■■■□□ 2.18
VPS53-216ENST00000574029 A0A0G2JLW4 131 aa28.66■■■□□ 2.18
VPS53-216ENST00000574029 ZNF526Q8TF50 670 aaPredicted RBP28.66■■■□□ 2.18
VPS53-216ENST00000574029 PARP3Q9Y6F1 533 aa28.66■■■□□ 2.18
VPS53-216ENST00000574029 VIRMAQ69YN4 1812 aaKnown RBP28.66■■■□□ 2.18
VPS53-216ENST00000574029 ADAMTS7Q9UKP4 1686 aa28.64■■■□□ 2.18
VPS53-216ENST00000574029 PER1O15534 1290 aaPredicted RBP28.64■■■□□ 2.18
VPS53-216ENST00000574029 SLC52A2Q9HAB3 445 aa28.64■■■□□ 2.18
VPS53-216ENST00000574029 MRC1P22897 1456 aa28.64■■■□□ 2.17
VPS53-216ENST00000574029 DPEP1P16444 411 aa28.63■■■□□ 2.17
VPS53-216ENST00000574029 LGR6Q9HBX8 967 aa28.63■■■□□ 2.17
VPS53-216ENST00000574029 BCS1LQ9Y276 419 aa28.63■■■□□ 2.17
VPS53-216ENST00000574029 USP42Q9H9J4 1324 aaKnown RBP28.63■■■□□ 2.17
VPS53-216ENST00000574029 INTS5Q6P9B9 1019 aaKnown RBP28.62■■■□□ 2.17
VPS53-216ENST00000574029 SRP68Q9UHB9 627 aaKnown RBP28.62■■■□□ 2.17
VPS53-216ENST00000574029 RNMTO43148 476 aaKnown RBP28.6■■■□□ 2.17
VPS53-216ENST00000574029 HMOX1P09601 288 aa28.6■■■□□ 2.17
VPS53-216ENST00000574029 KCNA3P22001 575 aa28.59■■■□□ 2.17
VPS53-216ENST00000574029 FKBP8Q14318 412 aa28.59■■■□□ 2.17
VPS53-216ENST00000574029 ARFGEF1Q9Y6D6 1849 aa28.58■■■□□ 2.17
VPS53-216ENST00000574029 DNAJC10Q8IXB1 793 aa28.58■■■□□ 2.17
VPS53-216ENST00000574029 DDR1Q08345 913 aa28.57■■■□□ 2.16
VPS53-216ENST00000574029 KCPQ6ZWJ8 1503 aa28.57■■■□□ 2.16
VPS53-216ENST00000574029 KIF3CO14782 793 aa28.56■■■□□ 2.16
VPS53-216ENST00000574029 DIAPH1O60610 1272 aaKnown RBP28.56■■■□□ 2.16
VPS53-216ENST00000574029 FCHSD2O94868 740 aa28.56■■■□□ 2.16
VPS53-216ENST00000574029 MTHFSDQ2M296 383 aaKnown RBP28.56■■■□□ 2.16
VPS53-216ENST00000574029 CC2D1BQ5T0F9 858 aaKnown RBP28.55■■■□□ 2.16
VPS53-216ENST00000574029 ARHGAP27Q6ZUM4 889 aa28.55■■■□□ 2.16
VPS53-216ENST00000574029 SOS1Q07889 1333 aaPredicted RBP28.54■■■□□ 2.16
VPS53-216ENST00000574029 CYP19A1P11511 503 aaPredicted RBP28.54■■■□□ 2.16
VPS53-216ENST00000574029 HSPA6P17066 643 aa28.54■■■□□ 2.16
VPS53-216ENST00000574029 SLC39A6Q13433 755 aa28.54■■■□□ 2.16
VPS53-216ENST00000574029 TM4SF1P30408 202 aa28.53■■■□□ 2.16
VPS53-216ENST00000574029 UBR2Q8IWV8 1755 aa28.52■■■□□ 2.16
VPS53-216ENST00000574029 PIM2Q9P1W9 311 aa28.52■■■□□ 2.16
VPS53-216ENST00000574029 COL3A1P02461 1466 aaPredicted RBP28.52■■■□□ 2.16
VPS53-216ENST00000574029 NPC1L1Q9UHC9 1359 aa28.51■■■□□ 2.16
VPS53-216ENST00000574029 POLRMTO00411 1230 aaKnown RBP28.51■■■□□ 2.15
VPS53-216ENST00000574029 ZPR1O75312 459 aa28.51■■■□□ 2.15
VPS53-216ENST00000574029 USPL1Q5W0Q7 1092 aa28.51■■■□□ 2.15
VPS53-216ENST00000574029 VSIG10Q8N0Z9 540 aa28.49■■■□□ 2.15
VPS53-216ENST00000574029 DALRD3Q5D0E6 543 aaKnown RBP28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms