RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 POLR3GLQ9BT43 218 aa9.29□□□□□ -0.92
VPS53-213ENST00000572334 ATG3Q9NT62 314 aa9.29□□□□□ -0.92
VPS53-213ENST00000572334 KDM6AO15550 1401 aaPredicted RBP9.29□□□□□ -0.92
VPS53-213ENST00000572334 BRCA1P38398 1863 aaKnown RBP9.28□□□□□ -0.92
VPS53-213ENST00000572334 N4BP2Q86UW6 1770 aaPredicted RBP9.28□□□□□ -0.92
VPS53-213ENST00000572334 EIF4G2P78344 907 aaKnown RBP eCLIP9.28□□□□□ -0.922e-8■■■■■ 33.8
VPS53-213ENST00000572334 IFNL2Q8IZJ0 200 aa9.28□□□□□ -0.92
VPS53-213ENST00000572334 TJP1Q07157 1748 aa9.28□□□□□ -0.92
VPS53-213ENST00000572334 CICQ96RK0 1608 aaPredicted RBP9.27□□□□□ -0.92
VPS53-213ENST00000572334 ADAMTS7Q9UKP4 1686 aa9.27□□□□□ -0.93
VPS53-213ENST00000572334 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.27□□□□□ -0.93
VPS53-213ENST00000572334 FLAD1Q8NFF5 587 aa9.27□□□□□ -0.93
VPS53-213ENST00000572334 TMOD3Q9NYL9 352 aa9.27□□□□□ -0.93
VPS53-213ENST00000572334 PHF14O94880 888 aa9.26□□□□□ -0.93
VPS53-213ENST00000572334 SSFA2P28290 1259 aa9.26□□□□□ -0.93
VPS53-213ENST00000572334 AEBP1Q8IUX7 1158 aa9.26□□□□□ -0.93
VPS53-213ENST00000572334 AK7Q96M32 723 aa9.26□□□□□ -0.93
VPS53-213ENST00000572334 CD2APQ9Y5K6 639 aa9.26□□□□□ -0.93
VPS53-213ENST00000572334 ERVV-2B6SEH9 535 aa9.25□□□□□ -0.93
VPS53-213ENST00000572334 ATP6V1AP38606 617 aa9.25□□□□□ -0.93
VPS53-213ENST00000572334 AMER1Q5JTC6 1135 aaPredicted RBP9.25□□□□□ -0.93
VPS53-213ENST00000572334 ADCY9O60503 1353 aa9.24□□□□□ -0.93
VPS53-213ENST00000572334 GNPATO15228 680 aa9.24□□□□□ -0.93
VPS53-213ENST00000572334 IL13P35225 146 aa9.24□□□□□ -0.93
VPS53-213ENST00000572334 C1QTNF8P60827 252 aa9.24□□□□□ -0.93
VPS53-213ENST00000572334 CEP350Q5VT06 3117 aa9.23□□□□□ -0.93
VPS53-213ENST00000572334 PER1O15534 1290 aaPredicted RBP9.23□□□□□ -0.93
VPS53-213ENST00000572334 GRIN3BO60391 1043 aa9.23□□□□□ -0.93
VPS53-213ENST00000572334 HMGB2P26583 209 aaKnown RBP9.23□□□□□ -0.93
VPS53-213ENST00000572334 MORC1Q86VD1 984 aa9.23□□□□□ -0.93
VPS53-213ENST00000572334 DCAF5Q96JK2 942 aa9.23□□□□□ -0.93
VPS53-213ENST00000572334 KIF7Q2M1P5 1343 aa9.23□□□□□ -0.93
VPS53-213ENST00000572334 PXDNLA1KZ92 1463 aa9.22□□□□□ -0.93
VPS53-213ENST00000572334 ARFGEF1Q9Y6D6 1849 aa9.22□□□□□ -0.93
VPS53-213ENST00000572334 PLEKHO1Q53GL0 409 aaPredicted RBP9.22□□□□□ -0.93
VPS53-213ENST00000572334 SULT6B1Q6IMI4 303 aa9.22□□□□□ -0.93
VPS53-213ENST00000572334 ZNF530Q6P9A1 599 aaPredicted RBP9.22□□□□□ -0.93
VPS53-213ENST00000572334 CNTNAP4Q9C0A0 1308 aa9.22□□□□□ -0.93
VPS53-213ENST00000572334 UBR2Q8IWV8 1755 aa9.22□□□□□ -0.93
VPS53-213ENST00000572334 ATP10DQ9P241 1426 aa9.22□□□□□ -0.93
VPS53-213ENST00000572334 AFDNP55196 1824 aaKnown RBP9.21□□□□□ -0.93
VPS53-213ENST00000572334 MRC1P22897 1456 aa9.21□□□□□ -0.93
VPS53-213ENST00000572334 HSP90AB1P08238 724 aaKnown RBP9.21□□□□□ -0.94
VPS53-213ENST00000572334 AMOTQ4VCS5 1084 aa9.21□□□□□ -0.94
VPS53-213ENST00000572334 RC3H1Q5TC82 1133 aaKnown RBP9.21□□□□□ -0.94
VPS53-213ENST00000572334 CCER1Q8TC90 406 aaPredicted RBP9.21□□□□□ -0.94
VPS53-213ENST00000572334 ARHGEF1Q92888 912 aaKnown RBP9.21□□□□□ -0.94
VPS53-213ENST00000572334 SIPA1L3O60292 1781 aaPredicted RBP9.21□□□□□ -0.94
VPS53-213ENST00000572334 C10orf71Q711Q0 1435 aa9.21□□□□□ -0.94
VPS53-213ENST00000572334 COL3A1P02461 1466 aaPredicted RBP9.21□□□□□ -0.94
VPS53-213ENST00000572334 SBF1O95248 1867 aa9.2□□□□□ -0.94
VPS53-213ENST00000572334 RPS6KA4O75676 772 aa9.2□□□□□ -0.94
VPS53-213ENST00000572334 MMP10P09238 476 aa9.2□□□□□ -0.94
VPS53-213ENST00000572334 GYS1P13807 737 aa9.2□□□□□ -0.94
VPS53-213ENST00000572334 NFATC2IPQ8NCF5 419 aa9.2□□□□□ -0.94
VPS53-213ENST00000572334 RBM42Q9BTD8 480 aaKnown RBP9.2□□□□□ -0.94
VPS53-213ENST00000572334 WWC3Q9ULE0 1092 aa9.2□□□□□ -0.94
VPS53-213ENST00000572334 KNSTRNQ9Y448 316 aa9.2□□□□□ -0.94
VPS53-213ENST00000572334 KCPQ6ZWJ8 1503 aa9.2□□□□□ -0.94
VPS53-213ENST00000572334 GIGYF1O75420 1035 aaPredicted RBP9.19□□□□□ -0.94
VPS53-213ENST00000572334 MTHFSP49914 203 aa9.19□□□□□ -0.94
VPS53-213ENST00000572334 CABP4P57796 275 aa9.19□□□□□ -0.94
VPS53-213ENST00000572334 TRAPPC3LQ5T215 181 aa9.19□□□□□ -0.94
VPS53-213ENST00000572334 LGR6Q9HBX8 967 aa9.19□□□□□ -0.94
VPS53-213ENST00000572334 RTCBQ9Y3I0 505 aaKnown RBP9.19□□□□□ -0.94
VPS53-213ENST00000572334 NRXN2Q9P2S2 1712 aa9.19□□□□□ -0.94
VPS53-213ENST00000572334 SENP3-EIF4A1A0A087X0R7 540 aa9.18□□□□□ -0.94
VPS53-213ENST00000572334 PTCD1O75127 700 aaKnown RBP9.18□□□□□ -0.94
VPS53-213ENST00000572334 CRKLP46109 303 aaKnown RBP9.18□□□□□ -0.94
VPS53-213ENST00000572334 INTS5Q6P9B9 1019 aaKnown RBP9.18□□□□□ -0.94
VPS53-213ENST00000572334 HMOX1P09601 288 aa9.17□□□□□ -0.94
VPS53-213ENST00000572334 KCNA3P22001 575 aa9.17□□□□□ -0.94
VPS53-213ENST00000572334 AKAP4Q5JQC9 854 aa9.17□□□□□ -0.94
VPS53-213ENST00000572334 C1orf141Q5JVX7 400 aa9.17□□□□□ -0.94
VPS53-213ENST00000572334 NLGN1Q8N2Q7 840 aa9.17□□□□□ -0.94
VPS53-213ENST00000572334 SRP68Q9UHB9 627 aaKnown RBP9.17□□□□□ -0.94
VPS53-213ENST00000572334 CCDC88AQ3V6T2 1871 aa9.17□□□□□ -0.94
VPS53-213ENST00000572334 DLEC1Q9Y238 1755 aa9.17□□□□□ -0.94
VPS53-213ENST00000572334 USP42Q9H9J4 1324 aaKnown RBP9.16□□□□□ -0.94
VPS53-213ENST00000572334 A0A0G2JLW4 131 aa9.16□□□□□ -0.94
VPS53-213ENST00000572334 RNMTO43148 476 aaKnown RBP9.16□□□□□ -0.94
VPS53-213ENST00000572334 DPEP1P16444 411 aa9.16□□□□□ -0.94
VPS53-213ENST00000572334 TGFB2P61812 414 aa9.16□□□□□ -0.94
VPS53-213ENST00000572334 DDR1Q08345 913 aa9.16□□□□□ -0.94
VPS53-213ENST00000572334 FKBP8Q14318 412 aa9.16□□□□□ -0.94
VPS53-213ENST00000572334 MTHFSDQ2M296 383 aaKnown RBP9.16□□□□□ -0.94
VPS53-213ENST00000572334 DNAJC10Q8IXB1 793 aa9.16□□□□□ -0.94
VPS53-213ENST00000572334 SLC52A2Q9HAB3 445 aa9.16□□□□□ -0.94
VPS53-213ENST00000572334 ANKRD31Q8N7Z5 1873 aa9.15□□□□□ -0.94
VPS53-213ENST00000572334 NPC1L1Q9UHC9 1359 aa9.15□□□□□ -0.94
VPS53-213ENST00000572334 RFC4P35249 363 aa9.15□□□□□ -0.94
VPS53-213ENST00000572334 SLC39A6Q13433 755 aa9.15□□□□□ -0.94
VPS53-213ENST00000572334 CC2D1BQ5T0F9 858 aaKnown RBP9.15□□□□□ -0.94
VPS53-213ENST00000572334 SOS1Q07889 1333 aaPredicted RBP9.14□□□□□ -0.95
VPS53-213ENST00000572334 KIF3CO14782 793 aa9.14□□□□□ -0.95
VPS53-213ENST00000572334 CYP19A1P11511 503 aaPredicted RBP9.14□□□□□ -0.95
VPS53-213ENST00000572334 TM4SF1P30408 202 aa9.14□□□□□ -0.95
VPS53-213ENST00000572334 BCL2L12Q9HB09 334 aa9.14□□□□□ -0.95
VPS53-213ENST00000572334 POLRMTO00411 1230 aaKnown RBP9.13□□□□□ -0.95
VPS53-213ENST00000572334 DIAPH1O60610 1272 aaKnown RBP9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms