RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 TRAPPC3LQ5T215 181 aa22.74■■□□□ 1.23
CLK3-223ENST00000568488 NLGN1Q8N2Q7 840 aa22.74■■□□□ 1.23
CLK3-223ENST00000568488 INSRP06213 1382 aa22.74■■□□□ 1.23
CLK3-223ENST00000568488 FSTL1Q12841 308 aa22.73■■□□□ 1.23
CLK3-223ENST00000568488 CCDC87Q9NVE4 849 aa22.73■■□□□ 1.23
CLK3-223ENST00000568488 SPG7Q9UQ90 795 aa22.73■■□□□ 1.23
CLK3-223ENST00000568488 NKX1-1Q15270 411 aaPredicted RBP22.72■■□□□ 1.23
CLK3-223ENST00000568488 RTCBQ9Y3I0 505 aaKnown RBP22.72■■□□□ 1.23
CLK3-223ENST00000568488 PRELPP51888 382 aa22.71■■□□□ 1.23
CLK3-223ENST00000568488 RRAGCQ9HB90 399 aa22.71■■□□□ 1.23
CLK3-223ENST00000568488 FLT4P35916 1363 aa22.7■■□□□ 1.22
CLK3-223ENST00000568488 KDM2BQ8NHM5 1336 aa22.69■■□□□ 1.22
CLK3-223ENST00000568488 ST20-MTHFSA0A0A6YYL1 179 aa22.69■■□□□ 1.22
CLK3-223ENST00000568488 TESK2Q96S53 571 aa22.69■■□□□ 1.22
CLK3-223ENST00000568488 PARP3Q9Y6F1 533 aa22.69■■□□□ 1.22
CLK3-223ENST00000568488 MAP2P11137 1827 aaKnown RBP22.68■■□□□ 1.22
CLK3-223ENST00000568488 ATG3Q9NT62 314 aa22.68■■□□□ 1.22
CLK3-223ENST00000568488 C10orf71Q711Q0 1435 aa22.67■■□□□ 1.22
CLK3-223ENST00000568488 PLEKHG2Q9H7P9 1386 aa22.67■■□□□ 1.22
CLK3-223ENST00000568488 ARHGEF1Q92888 912 aaKnown RBP22.67■■□□□ 1.22
CLK3-223ENST00000568488 RNF181Q9P0P0 153 aa22.67■■□□□ 1.22
CLK3-223ENST00000568488 KIAA1551Q9HCM1 1747 aa22.67■■□□□ 1.22
CLK3-223ENST00000568488 KCPQ6ZWJ8 1503 aa22.67■■□□□ 1.22
CLK3-223ENST00000568488 KIF13BQ9NQT8 1826 aa22.66■■□□□ 1.22
CLK3-223ENST00000568488 PPM1GO15355 546 aaPredicted RBP22.66■■□□□ 1.22
CLK3-223ENST00000568488 RFC4P35249 363 aa22.66■■□□□ 1.22
CLK3-223ENST00000568488 KCNA3P22001 575 aa22.65■■□□□ 1.22
CLK3-223ENST00000568488 RBM42Q9BTD8 480 aaKnown RBP22.65■■□□□ 1.22
CLK3-223ENST00000568488 PIM2Q9P1W9 311 aa22.65■■□□□ 1.22
CLK3-223ENST00000568488 EMILIN1Q9Y6C2 1016 aa22.65■■□□□ 1.22
CLK3-223ENST00000568488 SLC24A1O60721 1099 aa22.64■■□□□ 1.21
CLK3-223ENST00000568488 GYS1P13807 737 aa22.64■■□□□ 1.21
CLK3-223ENST00000568488 DALRD3Q5D0E6 543 aaKnown RBP22.63■■□□□ 1.21
CLK3-223ENST00000568488 IFNL2Q8IZJ0 200 aa22.63■■□□□ 1.21
CLK3-223ENST00000568488 KIF24Q5T7B8 1368 aa22.63■■□□□ 1.21
CLK3-223ENST00000568488 PKD1L3Q7Z443 1732 aa22.62■■□□□ 1.21
CLK3-223ENST00000568488 PCNTO95613 3336 aa22.62■■□□□ 1.21
CLK3-223ENST00000568488 PHKG2P15735 406 aa22.62■■□□□ 1.21
CLK3-223ENST00000568488 SMC1BQ8NDV3 1235 aa22.62■■□□□ 1.21
CLK3-223ENST00000568488 ADRA2BP18089 450 aa22.61■■□□□ 1.21
CLK3-223ENST00000568488 HSPA1AP0DMV8 641 aaKnown RBP22.6■■□□□ 1.21
CLK3-223ENST00000568488 HSPA1BP0DMV9 641 aaKnown RBP22.6■■□□□ 1.21
CLK3-223ENST00000568488 DCAF5Q96JK2 942 aa22.6■■□□□ 1.21
CLK3-223ENST00000568488 SLC4A9Q96Q91 983 aa22.6■■□□□ 1.21
CLK3-223ENST00000568488 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.6■■□□□ 1.21
CLK3-223ENST00000568488 C4AP0C0L4 1744 aa22.6■■□□□ 1.21
CLK3-223ENST00000568488 RPS6KA4O75676 772 aa22.59■■□□□ 1.21
CLK3-223ENST00000568488 RC3H1Q5TC82 1133 aaKnown RBP22.59■■□□□ 1.21
CLK3-223ENST00000568488 EYA1Q99502 592 aa22.58■■□□□ 1.21
CLK3-223ENST00000568488 TONSLQ96HA7 1378 aa22.57■■□□□ 1.2
CLK3-223ENST00000568488 CHRNA5P30532 468 aa22.56■■□□□ 1.2
CLK3-223ENST00000568488 BRCA1P38398 1863 aaKnown RBP22.56■■□□□ 1.2
CLK3-223ENST00000568488 CNTNAP4Q9C0A0 1308 aa22.55■■□□□ 1.2
CLK3-223ENST00000568488 ARFGEF1Q9Y6D6 1849 aa22.54■■□□□ 1.2
CLK3-223ENST00000568488 KDRP35968 1356 aa22.54■■□□□ 1.2
CLK3-223ENST00000568488 SRP68Q9UHB9 627 aaKnown RBP22.54■■□□□ 1.2
CLK3-223ENST00000568488 NCAPD2Q15021 1401 aa22.53■■□□□ 1.2
CLK3-223ENST00000568488 FKBP8Q14318 412 aa22.52■■□□□ 1.2
CLK3-223ENST00000568488 WASHC2AQ641Q2 1341 aa22.52■■□□□ 1.2
CLK3-223ENST00000568488 KIF20BQ96Q89 1820 aa22.52■■□□□ 1.2
CLK3-223ENST00000568488 ERVV-2B6SEH9 535 aa22.51■■□□□ 1.19
CLK3-223ENST00000568488 VEGFAP15692 232 aaPredicted RBP22.51■■□□□ 1.19
CLK3-223ENST00000568488 RASSF7Q02833 373 aa22.51■■□□□ 1.19
CLK3-223ENST00000568488 DDR1Q08345 913 aa22.51■■□□□ 1.19
CLK3-223ENST00000568488 TNRC6CQ9HCJ0 1690 aaKnown RBP22.51■■□□□ 1.19
CLK3-223ENST00000568488 PTCD1O75127 700 aaKnown RBP22.49■■□□□ 1.19
CLK3-223ENST00000568488 CABP4P57796 275 aa22.49■■□□□ 1.19
CLK3-223ENST00000568488 CARD14Q9BXL6 1004 aa22.49■■□□□ 1.19
CLK3-223ENST00000568488 GLTPD2A6NH11 291 aa22.47■■□□□ 1.19
CLK3-223ENST00000568488 HSP90AB1P08238 724 aaKnown RBP22.47■■□□□ 1.19
CLK3-223ENST00000568488 CRKLP46109 303 aaKnown RBP22.47■■□□□ 1.19
CLK3-223ENST00000568488 SBF1O95248 1867 aa22.46■■□□□ 1.19
CLK3-223ENST00000568488 LMNB1P20700 586 aa22.46■■□□□ 1.19
CLK3-223ENST00000568488 USP42Q9H9J4 1324 aaKnown RBP22.46■■□□□ 1.19
CLK3-223ENST00000568488 CDCA8Q53HL2 280 aa22.45■■□□□ 1.18
CLK3-223ENST00000568488 ZC3H4Q9UPT8 1303 aaKnown RBP22.45■■□□□ 1.18
CLK3-223ENST00000568488 COL5A3P25940 1745 aaPredicted RBP22.45■■□□□ 1.18
CLK3-223ENST00000568488 POLRMTO00411 1230 aaKnown RBP22.44■■□□□ 1.18
CLK3-223ENST00000568488 EIF4A2Q14240 407 aaKnown RBP22.44■■□□□ 1.18
CLK3-223ENST00000568488 POLKQ9UBT6 870 aa22.44■■□□□ 1.18
CLK3-223ENST00000568488 MYH14Q7Z406 1995 aaKnown RBP22.43■■□□□ 1.18
CLK3-223ENST00000568488 PLEKHO1Q53GL0 409 aaPredicted RBP22.43■■□□□ 1.18
CLK3-223ENST00000568488 ZPR1O75312 459 aa22.42■■□□□ 1.18
CLK3-223ENST00000568488 TM4SF1P30408 202 aa22.42■■□□□ 1.18
CLK3-223ENST00000568488 ZNF831Q5JPB2 1677 aa22.42■■□□□ 1.18
CLK3-223ENST00000568488 TNNT2P45379 298 aaPredicted RBP22.41■■□□□ 1.18
CLK3-223ENST00000568488 ZNF530Q6P9A1 599 aaPredicted RBP22.41■■□□□ 1.18
CLK3-223ENST00000568488 MTHFSP49914 203 aa22.4■■□□□ 1.18
CLK3-223ENST00000568488 USPL1Q5W0Q7 1092 aa22.4■■□□□ 1.18
CLK3-223ENST00000568488 NFATC2IPQ8NCF5 419 aa22.4■■□□□ 1.18
CLK3-223ENST00000568488 MKRN1Q9UHC7 482 aaKnown RBP22.4■■□□□ 1.18
CLK3-223ENST00000568488 DPY19L2Q6NUT2 758 aa22.38■■□□□ 1.17
CLK3-223ENST00000568488 TTLL6Q8N841 843 aa22.38■■□□□ 1.17
CLK3-223ENST00000568488 KDM6AO15550 1401 aaPredicted RBP22.38■■□□□ 1.17
CLK3-223ENST00000568488 INTS5Q6P9B9 1019 aaKnown RBP22.37■■□□□ 1.17
CLK3-223ENST00000568488 POTECB2RU33 542 aa22.36■■□□□ 1.17
CLK3-223ENST00000568488 C1orf141Q5JVX7 400 aa22.36■■□□□ 1.17
CLK3-223ENST00000568488 ANKRD26Q9UPS8 1709 aa22.35■■□□□ 1.17
CLK3-223ENST00000568488 AMOTQ4VCS5 1084 aa22.35■■□□□ 1.17
CLK3-223ENST00000568488 C2CD5Q86YS7 1000 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms