RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 ATG3Q9NT62 314 aa17.81■□□□□ 0.44
SF3B3-202ENST00000562722 UBR3Q6ZT12 1888 aa17.8■□□□□ 0.44
SF3B3-202ENST00000562722 HSP90AB1P08238 724 aaKnown RBP17.8■□□□□ 0.44
SF3B3-202ENST00000562722 RBM42Q9BTD8 480 aaKnown RBP17.8■□□□□ 0.44
SF3B3-202ENST00000562722 IGSF1Q8N6C5 1336 aa17.79■□□□□ 0.44
SF3B3-202ENST00000562722 PLEKHO1Q53GL0 409 aaPredicted RBP17.79■□□□□ 0.44
SF3B3-202ENST00000562722 MORC1Q86VD1 984 aa17.79■□□□□ 0.44
SF3B3-202ENST00000562722 ZNF530Q6P9A1 599 aaPredicted RBP17.78■□□□□ 0.44
SF3B3-202ENST00000562722 CCER1Q8TC90 406 aaPredicted RBP17.78■□□□□ 0.44
SF3B3-202ENST00000562722 DCAF5Q96JK2 942 aa17.78■□□□□ 0.44
SF3B3-202ENST00000562722 ATP10DQ9P241 1426 aa17.78■□□□□ 0.44
SF3B3-202ENST00000562722 PLEKHG2Q9H7P9 1386 aa17.78■□□□□ 0.44
SF3B3-202ENST00000562722 ERVV-2B6SEH9 535 aa17.77■□□□□ 0.44
SF3B3-202ENST00000562722 CABP4P57796 275 aa17.77■□□□□ 0.44
SF3B3-202ENST00000562722 RTCBQ9Y3I0 505 aaKnown RBP17.77■□□□□ 0.44
SF3B3-202ENST00000562722 MMP10P09238 476 aa17.76■□□□□ 0.43
SF3B3-202ENST00000562722 AMOTQ4VCS5 1084 aa17.76■□□□□ 0.43
SF3B3-202ENST00000562722 C1orf141Q5JVX7 400 aa17.76■□□□□ 0.43
SF3B3-202ENST00000562722 TRAPPC3LQ5T215 181 aa17.76■□□□□ 0.43
SF3B3-202ENST00000562722 ZNF526Q8TF50 670 aaPredicted RBP17.75■□□□□ 0.43
SF3B3-202ENST00000562722 GPBP1L1Q9HC44 474 aaPredicted RBP17.75■□□□□ 0.43
SF3B3-202ENST00000562722 KNSTRNQ9Y448 316 aa17.75■□□□□ 0.43
SF3B3-202ENST00000562722 KDRP35968 1356 aa17.75■□□□□ 0.43
SF3B3-202ENST00000562722 MTHFSP49914 203 aa17.74■□□□□ 0.43
SF3B3-202ENST00000562722 AEBP1Q8IUX7 1158 aa17.74■□□□□ 0.43
SF3B3-202ENST00000562722 KDM6AO15550 1401 aaPredicted RBP17.72■□□□□ 0.43
SF3B3-202ENST00000562722 SULT6B1Q6IMI4 303 aa17.72■□□□□ 0.43
SF3B3-202ENST00000562722 SLC4A9Q96Q91 983 aa17.72■□□□□ 0.43
SF3B3-202ENST00000562722 PTCD1O75127 700 aaKnown RBP17.71■□□□□ 0.43
SF3B3-202ENST00000562722 RFC4P35249 363 aa17.71■□□□□ 0.43
SF3B3-202ENST00000562722 NLGN1Q8N2Q7 840 aa17.71■□□□□ 0.43
SF3B3-202ENST00000562722 CNTNAP4Q9C0A0 1308 aa17.71■□□□□ 0.42
SF3B3-202ENST00000562722 ADRA2BP18089 450 aa17.7■□□□□ 0.42
SF3B3-202ENST00000562722 RC3H1Q5TC82 1133 aaKnown RBP17.7■□□□□ 0.42
SF3B3-202ENST00000562722 ARHGEF1Q92888 912 aaKnown RBP17.7■□□□□ 0.42
SF3B3-202ENST00000562722 CICQ96RK0 1608 aaPredicted RBP17.69■□□□□ 0.42
SF3B3-202ENST00000562722 ADCY9O60503 1353 aa17.69■□□□□ 0.42
SF3B3-202ENST00000562722 NFATC2IPQ8NCF5 419 aa17.69■□□□□ 0.42
SF3B3-202ENST00000562722 RPS6KA4O75676 772 aa17.68■□□□□ 0.42
SF3B3-202ENST00000562722 CCDC87Q9NVE4 849 aa17.68■□□□□ 0.42
SF3B3-202ENST00000562722 PARP3Q9Y6F1 533 aa17.68■□□□□ 0.42
SF3B3-202ENST00000562722 A0A0G2JLW4 131 aa17.67■□□□□ 0.42
SF3B3-202ENST00000562722 GYS1P13807 737 aa17.67■□□□□ 0.42
SF3B3-202ENST00000562722 TGFB2P61812 414 aa17.67■□□□□ 0.42
SF3B3-202ENST00000562722 BCS1LQ9Y276 419 aa17.67■□□□□ 0.42
SF3B3-202ENST00000562722 PXDNLA1KZ92 1463 aa17.67■□□□□ 0.42
SF3B3-202ENST00000562722 IL13P35225 146 aa17.66■□□□□ 0.42
SF3B3-202ENST00000562722 ZNF831Q5JPB2 1677 aa17.66■□□□□ 0.42
SF3B3-202ENST00000562722 C10orf71Q711Q0 1435 aa17.65■□□□□ 0.42
SF3B3-202ENST00000562722 COL5A3P25940 1745 aaPredicted RBP17.65■□□□□ 0.42
SF3B3-202ENST00000562722 CRKLP46109 303 aaKnown RBP17.65■□□□□ 0.42
SF3B3-202ENST00000562722 DPEP1P16444 411 aa17.63■□□□□ 0.41
SF3B3-202ENST00000562722 AKAP4Q5JQC9 854 aa17.63■□□□□ 0.41
SF3B3-202ENST00000562722 AMER1Q5JTC6 1135 aaPredicted RBP17.63■□□□□ 0.41
SF3B3-202ENST00000562722 ARHGAP27Q6ZUM4 889 aa17.63■□□□□ 0.41
SF3B3-202ENST00000562722 SRP68Q9UHB9 627 aaKnown RBP17.63■□□□□ 0.41
SF3B3-202ENST00000562722 C4AP0C0L4 1744 aa17.63■□□□□ 0.41
SF3B3-202ENST00000562722 FCHSD2O94868 740 aa17.62■□□□□ 0.41
SF3B3-202ENST00000562722 HMOX1P09601 288 aa17.62■□□□□ 0.41
SF3B3-202ENST00000562722 KIF7Q2M1P5 1343 aa17.62■□□□□ 0.41
SF3B3-202ENST00000562722 N4BP2Q86UW6 1770 aaPredicted RBP17.61■□□□□ 0.41
SF3B3-202ENST00000562722 KIF13BQ9NQT8 1826 aa17.61■□□□□ 0.41
SF3B3-202ENST00000562722 CNGB1Q14028 1251 aaPredicted RBP17.6■□□□□ 0.41
SF3B3-202ENST00000562722 FKBP8Q14318 412 aa17.6■□□□□ 0.41
SF3B3-202ENST00000562722 CC2D1BQ5T0F9 858 aaKnown RBP17.6■□□□□ 0.41
SF3B3-202ENST00000562722 SLC52A2Q9HAB3 445 aa17.6■□□□□ 0.41
SF3B3-202ENST00000562722 USP42Q9H9J4 1324 aaKnown RBP17.6■□□□□ 0.41
SF3B3-202ENST00000562722 ZPR1O75312 459 aa17.59■□□□□ 0.41
SF3B3-202ENST00000562722 DNAJC10Q8IXB1 793 aa17.59■□□□□ 0.41
SF3B3-202ENST00000562722 LGR6Q9HBX8 967 aa17.59■□□□□ 0.41
SF3B3-202ENST00000562722 TJP1Q07157 1748 aa17.58■□□□□ 0.41
SF3B3-202ENST00000562722 KIAA1551Q9HCM1 1747 aa17.58■□□□□ 0.41
SF3B3-202ENST00000562722 HSPA6P17066 643 aa17.58■□□□□ 0.4
SF3B3-202ENST00000562722 INTS5Q6P9B9 1019 aaKnown RBP17.58■□□□□ 0.4
SF3B3-202ENST00000562722 MYH14Q7Z406 1995 aaKnown RBP17.58■□□□□ 0.4
SF3B3-202ENST00000562722 RNMTO43148 476 aaKnown RBP17.57■□□□□ 0.4
SF3B3-202ENST00000562722 DIAPH1O60610 1272 aaKnown RBP17.57■□□□□ 0.4
SF3B3-202ENST00000562722 DDR1Q08345 913 aa17.57■□□□□ 0.4
SF3B3-202ENST00000562722 SLC39A6Q13433 755 aa17.57■□□□□ 0.4
SF3B3-202ENST00000562722 PIM2Q9P1W9 311 aa17.57■□□□□ 0.4
SF3B3-202ENST00000562722 SCN11AQ9UI33 1791 aa17.57■□□□□ 0.4
SF3B3-202ENST00000562722 KIF3CO14782 793 aa17.56■□□□□ 0.4
SF3B3-202ENST00000562722 MTHFSDQ2M296 383 aaKnown RBP17.56■□□□□ 0.4
SF3B3-202ENST00000562722 DALRD3Q5D0E6 543 aaKnown RBP17.56■□□□□ 0.4
SF3B3-202ENST00000562722 USPL1Q5W0Q7 1092 aa17.55■□□□□ 0.4
SF3B3-202ENST00000562722 MRC1P22897 1456 aa17.54■□□□□ 0.4
SF3B3-202ENST00000562722 SOS1Q07889 1333 aaPredicted RBP17.53■□□□□ 0.4
SF3B3-202ENST00000562722 POLRMTO00411 1230 aaKnown RBP17.53■□□□□ 0.4
SF3B3-202ENST00000562722 U2SURPO15042 1029 aaKnown RBP17.53■□□□□ 0.4
SF3B3-202ENST00000562722 CYP19A1P11511 503 aaPredicted RBP17.53■□□□□ 0.4
SF3B3-202ENST00000562722 KCNA3P22001 575 aa17.53■□□□□ 0.4
SF3B3-202ENST00000562722 CHRNA5P30532 468 aa17.53■□□□□ 0.4
SF3B3-202ENST00000562722 C9orf131Q5VYM1 1079 aa17.53■□□□□ 0.4
SF3B3-202ENST00000562722 TTC5Q8N0Z6 440 aa17.52■□□□□ 0.4
SF3B3-202ENST00000562722 ZBTB1Q9Y2K1 713 aa17.52■□□□□ 0.4
SF3B3-202ENST00000562722 COL15A1P39059 1388 aa17.52■□□□□ 0.39
SF3B3-202ENST00000562722 PER1O15534 1290 aaPredicted RBP17.51■□□□□ 0.39
SF3B3-202ENST00000562722 CANXP27824 592 aaKnown RBP17.51■□□□□ 0.39
SF3B3-202ENST00000562722 TM4SF1P30408 202 aa17.51■□□□□ 0.39
SF3B3-202ENST00000562722 NMRK2Q9NPI5 230 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms