RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 KRT32Q14532 448 aa16.04■□□□□ 0.16
CSPG4P12-202ENST00000559989 SRCIN1Q9C0H9 1055 aa16.04■□□□□ 0.16
CSPG4P12-202ENST00000559989 ACTN2P35609 894 aa16.03■□□□□ 0.16
CSPG4P12-202ENST00000559989 TRERF1Q96PN7 1200 aa16.03■□□□□ 0.16
CSPG4P12-202ENST00000559989 PPP1R9BQ96SB3 815 aa16.03■□□□□ 0.16
CSPG4P12-202ENST00000559989 NEMFO60524 1076 aa16.03■□□□□ 0.16
CSPG4P12-202ENST00000559989 MAP4K4O95819 1239 aaPredicted RBP16.03■□□□□ 0.16
CSPG4P12-202ENST00000559989 CWC25Q9NXE8 425 aaPredicted RBP16.03■□□□□ 0.16
CSPG4P12-202ENST00000559989 PHAXQ9H814 394 aaKnown RBP16.03■□□□□ 0.16
CSPG4P12-202ENST00000559989 TACC1O75410 805 aa16.03■□□□□ 0.16
CSPG4P12-202ENST00000559989 IL27Q8NEV9 243 aa16.03■□□□□ 0.16
CSPG4P12-202ENST00000559989 TTC36A6NLP5 189 aa16.03■□□□□ 0.16
CSPG4P12-202ENST00000559989 KIF20AO95235 890 aa16.02■□□□□ 0.16
CSPG4P12-202ENST00000559989 PDRG1Q9NUG6 133 aa16.02■□□□□ 0.16
CSPG4P12-202ENST00000559989 KIF5BP33176 963 aa16.02■□□□□ 0.16
CSPG4P12-202ENST00000559989 BLOC1S2Q6QNY1 142 aa16.02■□□□□ 0.16
CSPG4P12-202ENST00000559989 L3MBTL2Q969R5 705 aa16.02■□□□□ 0.16
CSPG4P12-202ENST00000559989 TTC12Q9H892 705 aaPredicted RBP16.02■□□□□ 0.16
CSPG4P12-202ENST00000559989 ARL1P40616 181 aaPredicted RBP16.02■□□□□ 0.15
CSPG4P12-202ENST00000559989 RAB34Q9BZG1 259 aa16.02■□□□□ 0.15
CSPG4P12-202ENST00000559989 ZNF287Q9HBT7 754 aa16.02■□□□□ 0.15
CSPG4P12-202ENST00000559989 SMG6Q86US8 1419 aaKnown RBP16.01■□□□□ 0.15
CSPG4P12-202ENST00000559989 HMGB1P1B2RPK0 211 aaPredicted RBP16.01■□□□□ 0.15
CSPG4P12-202ENST00000559989 TDO2P48775 406 aa16.01■□□□□ 0.15
CSPG4P12-202ENST00000559989 GSDMDP57764 484 aa16.01■□□□□ 0.15
CSPG4P12-202ENST00000559989 KIF5AQ12840 1032 aa16.01■□□□□ 0.15
CSPG4P12-202ENST00000559989 CCDC18Q5T9S5 1454 aa16.01■□□□□ 0.15
CSPG4P12-202ENST00000559989 PANK1Q8TE04 598 aa16.01■□□□□ 0.15
CSPG4P12-202ENST00000559989 PAIP2Q9BPZ3 127 aaKnown RBP16.01■□□□□ 0.15
CSPG4P12-202ENST00000559989 USP5P45974 858 aa16.01■□□□□ 0.15
CSPG4P12-202ENST00000559989 TDRD12Q587J7 1177 aaKnown RBP16.01■□□□□ 0.15
CSPG4P12-202ENST00000559989 CCDC174Q6PII3 467 aa16.01■□□□□ 0.15
CSPG4P12-202ENST00000559989 PLVAPQ9BX97 442 aa16.01■□□□□ 0.15
CSPG4P12-202ENST00000559989 GMNNO75496 209 aa16■□□□□ 0.15
CSPG4P12-202ENST00000559989 PPP4R3BQ5MIZ7 849 aa16■□□□□ 0.15
CSPG4P12-202ENST00000559989 CCDC183Q5T5S1 534 aa16■□□□□ 0.15
CSPG4P12-202ENST00000559989 NDC80O14777 642 aa16■□□□□ 0.15
CSPG4P12-202ENST00000559989 PRPF4BQ13523 1007 aaKnown RBP16■□□□□ 0.15
CSPG4P12-202ENST00000559989 PHF23Q9BUL5 403 aaPredicted RBP16■□□□□ 0.15
CSPG4P12-202ENST00000559989 EHMT1Q9H9B1 1298 aa16■□□□□ 0.15
CSPG4P12-202ENST00000559989 CTAGE5O15320 804 aa16■□□□□ 0.15
CSPG4P12-202ENST00000559989 CLIP2Q9UDT6 1046 aa16■□□□□ 0.15
CSPG4P12-202ENST00000559989 RASAL2Q9UJF2 1139 aa16■□□□□ 0.15
CSPG4P12-202ENST00000559989 CIZ1Q9ULV3 898 aaPredicted RBP16■□□□□ 0.15
CSPG4P12-202ENST00000559989 MAP3K9P80192 1104 aa16■□□□□ 0.15
CSPG4P12-202ENST00000559989 EHBP1Q8NDI1 1231 aa16■□□□□ 0.15
CSPG4P12-202ENST00000559989 TTC14Q96N46 770 aa16■□□□□ 0.15
CSPG4P12-202ENST00000559989 ST20-MTHFSA0A0A6YYL1 179 aa16■□□□□ 0.15
CSPG4P12-202ENST00000559989 DNA2P51530 1060 aa16■□□□□ 0.15
CSPG4P12-202ENST00000559989 HYPKQ9NX55 129 aa16■□□□□ 0.15
CSPG4P12-202ENST00000559989 ZNF526Q8TF50 670 aaPredicted RBP15.99■□□□□ 0.15
CSPG4P12-202ENST00000559989 SATB1Q01826 763 aa15.99■□□□□ 0.15
CSPG4P12-202ENST00000559989 CCDC110Q8TBZ0 833 aa15.99■□□□□ 0.15
CSPG4P12-202ENST00000559989 RSRC1Q96IZ7 334 aaKnown RBP15.99■□□□□ 0.15
CSPG4P12-202ENST00000559989 USP47Q96K76 1375 aa15.98■□□□□ 0.15
CSPG4P12-202ENST00000559989 KIAA0753Q2KHM9 967 aa15.98■□□□□ 0.15
CSPG4P12-202ENST00000559989 TMEM266Q2M3C6 531 aa15.98■□□□□ 0.15
CSPG4P12-202ENST00000559989 RGS22Q8NE09 1264 aa15.98■□□□□ 0.15
CSPG4P12-202ENST00000559989 UBA5Q9GZZ9 404 aa15.98■□□□□ 0.15
CSPG4P12-202ENST00000559989 ZBTB16Q05516 673 aa15.98■□□□□ 0.15
CSPG4P12-202ENST00000559989 ZSCAN29Q8IWY8 852 aaPredicted RBP15.98■□□□□ 0.15
CSPG4P12-202ENST00000559989 SARNPP82979 210 aaKnown RBP15.98■□□□□ 0.15
CSPG4P12-202ENST00000559989 NOP2P46087 812 aaKnown RBP15.98■□□□□ 0.15
CSPG4P12-202ENST00000559989 TTC31Q49AM3 519 aaPredicted RBP15.98■□□□□ 0.15
CSPG4P12-202ENST00000559989 AEBP2Q6ZN18 517 aaPredicted RBP15.98■□□□□ 0.15
CSPG4P12-202ENST00000559989 SMC1BQ8NDV3 1235 aa15.98■□□□□ 0.15
CSPG4P12-202ENST00000559989 SEPT10Q9P0V9 454 aa15.98■□□□□ 0.15
CSPG4P12-202ENST00000559989 SH3BP5O60239 455 aa15.97■□□□□ 0.15
CSPG4P12-202ENST00000559989 STIM2Q9P246 746 aa15.97■□□□□ 0.15
CSPG4P12-202ENST00000559989 CARMIL1Q5VZK9 1371 aa15.97■□□□□ 0.15
CSPG4P12-202ENST00000559989 KLHL10Q6JEL2 608 aa15.97■□□□□ 0.15
CSPG4P12-202ENST00000559989 GBP7Q8N8V2 638 aaPredicted RBP15.97■□□□□ 0.15
CSPG4P12-202ENST00000559989 SELENOOQ9BVL4 669 aa15.97■□□□□ 0.15
CSPG4P12-202ENST00000559989 PAXBP1Q9Y5B6 917 aa15.97■□□□□ 0.15
CSPG4P12-202ENST00000559989 CCDC172P0C7W6 258 aa15.97■□□□□ 0.15
CSPG4P12-202ENST00000559989 SYCE3A1L190 88 aa15.96■□□□□ 0.15
CSPG4P12-202ENST00000559989 ATP2C2O75185 946 aa15.96■□□□□ 0.15
CSPG4P12-202ENST00000559989 CCDC96Q2M329 555 aa15.96■□□□□ 0.15
CSPG4P12-202ENST00000559989 CCDC121Q6ZUS5 278 aa15.96■□□□□ 0.15
CSPG4P12-202ENST00000559989 PRKRIP1Q9H875 184 aaPredicted RBP15.96■□□□□ 0.15
CSPG4P12-202ENST00000559989 CAMK4Q16566 473 aa15.96■□□□□ 0.15
CSPG4P12-202ENST00000559989 MINK1Q8N4C8 1332 aaPredicted RBP15.96■□□□□ 0.15
CSPG4P12-202ENST00000559989 TTC21AQ8NDW8 1320 aa15.96■□□□□ 0.15
CSPG4P12-202ENST00000559989 RB1CC1Q8TDY2 1594 aa15.96■□□□□ 0.15
CSPG4P12-202ENST00000559989 VPS8Q8N3P4 1428 aa15.96■□□□□ 0.15
CSPG4P12-202ENST00000559989 OPA1O60313 960 aa15.96■□□□□ 0.15
CSPG4P12-202ENST00000559989 PRKCSHP14314 528 aaPredicted RBP15.96■□□□□ 0.15
CSPG4P12-202ENST00000559989 HMOX1P09601 288 aa15.96■□□□□ 0.15
CSPG4P12-202ENST00000559989 JADE2Q9NQC1 790 aa15.96■□□□□ 0.15
CSPG4P12-202ENST00000559989 STXBP4Q6ZWJ1 553 aa15.96■□□□□ 0.14
CSPG4P12-202ENST00000559989 SUDS3Q9H7L9 328 aaPredicted RBP15.95■□□□□ 0.14
CSPG4P12-202ENST00000559989 FAM177BA6PVY3 158 aa15.95■□□□□ 0.14
CSPG4P12-202ENST00000559989 CCT4P50991 539 aaKnown RBP15.95■□□□□ 0.14
CSPG4P12-202ENST00000559989 CUL5Q93034 780 aa15.95■□□□□ 0.14
CSPG4P12-202ENST00000559989 CCDC63Q8NA47 563 aa15.95■□□□□ 0.14
CSPG4P12-202ENST00000559989 MPHOSPH8Q99549 860 aa15.95■□□□□ 0.14
CSPG4P12-202ENST00000559989 FAM114A2Q9NRY5 505 aa15.95■□□□□ 0.14
CSPG4P12-202ENST00000559989 NBPF1Q3BBV0 1214 aa15.95■□□□□ 0.14
CSPG4P12-202ENST00000559989 WDR63Q8IWG1 891 aa15.95■□□□□ 0.14
CSPG4P12-202ENST00000559989 PRPF31Q8WWY3 499 aaKnown RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 159.8 ms