RNA–Protein interactions for RNA: ENST00000554607.1

FOXA1-204, Transcript of forkhead box A1, humanhuman

TSL 3

Gene FOXA1, Length 789 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-204ENST00000554607 ADCY9O60503 1353 aa33.34■■■□□ 2.93
FOXA1-204ENST00000554607 ERVV-2B6SEH9 535 aa33.33■■■□□ 2.93
FOXA1-204ENST00000554607 HSP90AB1P08238 724 aaKnown RBP33.33■■■□□ 2.93
FOXA1-204ENST00000554607 TRAPPC3LQ5T215 181 aa33.31■■■□□ 2.92
FOXA1-204ENST00000554607 RTCBQ9Y3I0 505 aaKnown RBP33.31■■■□□ 2.92
FOXA1-204ENST00000554607 CLSPNQ9HAW4 1339 aa33.3■■■□□ 2.92
FOXA1-204ENST00000554607 MMP10P09238 476 aa33.3■■■□□ 2.92
FOXA1-204ENST00000554607 WWC3Q9ULE0 1092 aa33.3■■■□□ 2.92
FOXA1-204ENST00000554607 PLEKHO1Q53GL0 409 aaPredicted RBP33.29■■■□□ 2.92
FOXA1-204ENST00000554607 NLGN1Q8N2Q7 840 aa33.29■■■□□ 2.92
FOXA1-204ENST00000554607 DCAF5Q96JK2 942 aa33.29■■■□□ 2.92
FOXA1-204ENST00000554607 ZNF526Q8TF50 670 aaPredicted RBP33.28■■■□□ 2.92
FOXA1-204ENST00000554607 RBM42Q9BTD8 480 aaKnown RBP33.27■■■□□ 2.92
FOXA1-204ENST00000554607 KDRP35968 1356 aa33.26■■■□□ 2.92
FOXA1-204ENST00000554607 ADRA2BP18089 450 aa33.26■■■□□ 2.91
FOXA1-204ENST00000554607 RC3H1Q5TC82 1133 aaKnown RBP33.26■■■□□ 2.91
FOXA1-204ENST00000554607 CEP350Q5VT06 3117 aa33.26■■■□□ 2.91
FOXA1-204ENST00000554607 TGFB2P61812 414 aa33.25■■■□□ 2.91
FOXA1-204ENST00000554607 AMOTQ4VCS5 1084 aa33.25■■■□□ 2.91
FOXA1-204ENST00000554607 ZNF831Q5JPB2 1677 aa33.23■■■□□ 2.91
FOXA1-204ENST00000554607 SLC4A9Q96Q91 983 aa33.22■■■□□ 2.91
FOXA1-204ENST00000554607 PANK3Q9H999 370 aa33.22■■■□□ 2.91
FOXA1-204ENST00000554607 CNTNAP4Q9C0A0 1308 aa33.22■■■□□ 2.91
FOXA1-204ENST00000554607 CABP4P57796 275 aa33.21■■■□□ 2.91
FOXA1-204ENST00000554607 EIF4G2P78344 907 aaKnown RBP eCLIP33.21■■■□□ 2.91
FOXA1-204ENST00000554607 ZNF530Q6P9A1 599 aaPredicted RBP33.21■■■□□ 2.91
FOXA1-204ENST00000554607 ARHGEF1Q92888 912 aaKnown RBP33.21■■■□□ 2.91
FOXA1-204ENST00000554607 RPS6KA4O75676 772 aa33.2■■■□□ 2.91
FOXA1-204ENST00000554607 HSPA6P17066 643 aa33.2■■■□□ 2.91
FOXA1-204ENST00000554607 RFC4P35249 363 aa33.2■■■□□ 2.91
FOXA1-204ENST00000554607 PXDNLA1KZ92 1463 aa33.18■■■□□ 2.9
FOXA1-204ENST00000554607 CCDC87Q9NVE4 849 aa33.18■■■□□ 2.9
FOXA1-204ENST00000554607 KIF13BQ9NQT8 1826 aa33.17■■■□□ 2.9
FOXA1-204ENST00000554607 MTHFSP49914 203 aa33.17■■■□□ 2.9
FOXA1-204ENST00000554607 C1orf141Q5JVX7 400 aa33.17■■■□□ 2.9
FOXA1-204ENST00000554607 CICQ96RK0 1608 aaPredicted RBP33.17■■■□□ 2.9
FOXA1-204ENST00000554607 KDM6AO15550 1401 aaPredicted RBP33.15■■■□□ 2.9
FOXA1-204ENST00000554607 GYS1P13807 737 aa33.15■■■□□ 2.9
FOXA1-204ENST00000554607 MORC1Q86VD1 984 aa33.15■■■□□ 2.9
FOXA1-204ENST00000554607 PCGF6Q9BYE7 350 aa33.15■■■□□ 2.9
FOXA1-204ENST00000554607 BCS1LQ9Y276 419 aa33.15■■■□□ 2.9
FOXA1-204ENST00000554607 PARP3Q9Y6F1 533 aa33.15■■■□□ 2.9
FOXA1-204ENST00000554607 A0A0G2JLW4 131 aa33.14■■■□□ 2.9
FOXA1-204ENST00000554607 C10orf71Q711Q0 1435 aa33.13■■■□□ 2.89
FOXA1-204ENST00000554607 HSPA5P11021 654 aaKnown RBP33.13■■■□□ 2.89
FOXA1-204ENST00000554607 COL5A3P25940 1745 aaPredicted RBP33.12■■■□□ 2.89
FOXA1-204ENST00000554607 KIF3CO14782 793 aa33.12■■■□□ 2.89
FOXA1-204ENST00000554607 PTCD1O75127 700 aaKnown RBP33.1■■■□□ 2.89
FOXA1-204ENST00000554607 IFFO2Q5TF58 517 aa33.1■■■□□ 2.89
FOXA1-204ENST00000554607 AEBP1Q8IUX7 1158 aa33.1■■■□□ 2.89
FOXA1-204ENST00000554607 N4BP2Q86UW6 1770 aaPredicted RBP33.09■■■□□ 2.89
FOXA1-204ENST00000554607 KIAA1551Q9HCM1 1747 aa33.09■■■□□ 2.89
FOXA1-204ENST00000554607 DPEP1P16444 411 aa33.09■■■□□ 2.89
FOXA1-204ENST00000554607 ARHGAP27Q6ZUM4 889 aa33.09■■■□□ 2.89
FOXA1-204ENST00000554607 NFATC2IPQ8NCF5 419 aa33.09■■■□□ 2.89
FOXA1-204ENST00000554607 C4AP0C0L4 1744 aa33.08■■■□□ 2.89
FOXA1-204ENST00000554607 SULT6B1Q6IMI4 303 aa33.08■■■□□ 2.89
FOXA1-204ENST00000554607 FCHSD2O94868 740 aa33.07■■■□□ 2.88
FOXA1-204ENST00000554607 CRKLP46109 303 aaKnown RBP33.06■■■□□ 2.88
FOXA1-204ENST00000554607 MYH14Q7Z406 1995 aaKnown RBP33.05■■■□□ 2.88
FOXA1-204ENST00000554607 KNSTRNQ9Y448 316 aa33.05■■■□□ 2.88
FOXA1-204ENST00000554607 IL13P35225 146 aa33.02■■■□□ 2.88
FOXA1-204ENST00000554607 PIM2Q9P1W9 311 aa33.01■■■□□ 2.87
FOXA1-204ENST00000554607 USP42Q9H9J4 1324 aaKnown RBP33.01■■■□□ 2.87
FOXA1-204ENST00000554607 TOMM70O94826 608 aa33■■■□□ 2.87
FOXA1-204ENST00000554607 KCNA3P22001 575 aa32.99■■■□□ 2.87
FOXA1-204ENST00000554607 AKAP4Q5JQC9 854 aa32.99■■■□□ 2.87
FOXA1-204ENST00000554607 SRP68Q9UHB9 627 aaKnown RBP32.99■■■□□ 2.87
FOXA1-204ENST00000554607 FKBP8Q14318 412 aa32.98■■■□□ 2.87
FOXA1-204ENST00000554607 APLP1P51693 650 aa32.97■■■□□ 2.87
FOXA1-204ENST00000554607 BRCA1P38398 1863 aaKnown RBP32.97■■■□□ 2.87
FOXA1-204ENST00000554607 DALRD3Q5D0E6 543 aaKnown RBP32.96■■■□□ 2.87
FOXA1-204ENST00000554607 INTS5Q6P9B9 1019 aaKnown RBP32.95■■■□□ 2.87
FOXA1-204ENST00000554607 DDR1Q08345 913 aa32.94■■■□□ 2.86
FOXA1-204ENST00000554607 SLC52A2Q9HAB3 445 aa32.94■■■□□ 2.86
FOXA1-204ENST00000554607 SCN11AQ9UI33 1791 aa32.93■■■□□ 2.86
FOXA1-204ENST00000554607 ZPR1O75312 459 aa32.93■■■□□ 2.86
FOXA1-204ENST00000554607 C9orf131Q5VYM1 1079 aa32.93■■■□□ 2.86
FOXA1-204ENST00000554607 TJP1Q07157 1748 aa32.93■■■□□ 2.86
FOXA1-204ENST00000554607 ARFGEF1Q9Y6D6 1849 aa32.92■■■□□ 2.86
FOXA1-204ENST00000554607 TM4SF1P30408 202 aa32.91■■■□□ 2.86
FOXA1-204ENST00000554607 DNAJC10Q8IXB1 793 aa32.91■■■□□ 2.86
FOXA1-204ENST00000554607 NMRK2Q9NPI5 230 aa32.91■■■□□ 2.86
FOXA1-204ENST00000554607 POLRMTO00411 1230 aaKnown RBP32.89■■■□□ 2.86
FOXA1-204ENST00000554607 AMER1Q5JTC6 1135 aaPredicted RBP32.89■■■□□ 2.86
FOXA1-204ENST00000554607 LGR6Q9HBX8 967 aa32.89■■■□□ 2.86
FOXA1-204ENST00000554607 SOS1Q07889 1333 aaPredicted RBP32.87■■■□□ 2.85
FOXA1-204ENST00000554607 RNMTO43148 476 aaKnown RBP32.87■■■□□ 2.85
FOXA1-204ENST00000554607 USPL1Q5W0Q7 1092 aa32.87■■■□□ 2.85
FOXA1-204ENST00000554607 C16orf71Q8IYS4 520 aaPredicted RBP32.87■■■□□ 2.85
FOXA1-204ENST00000554607 RBM46Q8TBY0 533 aaKnown RBP32.86■■■□□ 2.85
FOXA1-204ENST00000554607 KDM2BQ8NHM5 1336 aa32.85■■■□□ 2.85
FOXA1-204ENST00000554607 CYP19A1P11511 503 aaPredicted RBP32.85■■■□□ 2.85
FOXA1-204ENST00000554607 CHRNA5P30532 468 aa32.85■■■□□ 2.85
FOXA1-204ENST00000554607 NARFQ9UHQ1 456 aa32.84■■■□□ 2.85
FOXA1-204ENST00000554607 HMOX1P09601 288 aa32.83■■■□□ 2.85
FOXA1-204ENST00000554607 SLC39A6Q13433 755 aa32.83■■■□□ 2.85
FOXA1-204ENST00000554607 CCER1Q8TC90 406 aaPredicted RBP32.83■■■□□ 2.85
FOXA1-204ENST00000554607 RNF181Q9P0P0 153 aa32.83■■■□□ 2.85
FOXA1-204ENST00000554607 ADAMTS7Q9UKP4 1686 aa32.82■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms