RNA–Protein interactions for RNA: ENST00000554074.1

SLIRP-203, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 3

Gene SLIRP, Length 445 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-203ENST00000554074 C4AP0C0L4 1744 aa9.02□□□□□ -0.97
SLIRP-203ENST00000554074 NPC1L1Q9UHC9 1359 aa9.01□□□□□ -0.97
SLIRP-203ENST00000554074 ADAMTS7Q9UKP4 1686 aa9.01□□□□□ -0.97
SLIRP-203ENST00000554074 PER1O15534 1290 aaPredicted RBP9.01□□□□□ -0.97
SLIRP-203ENST00000554074 KDM6AO15550 1401 aaPredicted RBP9.01□□□□□ -0.97
SLIRP-203ENST00000554074 ATG3Q9NT62 314 aa9.01□□□□□ -0.97
SLIRP-203ENST00000554074 ASAP1Q9ULH1 1129 aa9.01□□□□□ -0.97
SLIRP-203ENST00000554074 IL13P35225 146 aa9□□□□□ -0.97
SLIRP-203ENST00000554074 MAPK8IP2Q13387 824 aaPredicted RBP9□□□□□ -0.97
SLIRP-203ENST00000554074 ZNF530Q6P9A1 599 aaPredicted RBP9□□□□□ -0.97
SLIRP-203ENST00000554074 LINC00116Q8NCU8 138 aa9□□□□□ -0.97
SLIRP-203ENST00000554074 CD2APQ9Y5K6 639 aa9□□□□□ -0.97
SLIRP-203ENST00000554074 TJP1Q07157 1748 aa9□□□□□ -0.97
SLIRP-203ENST00000554074 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.99□□□□□ -0.97
SLIRP-203ENST00000554074 ATP6V1AP38606 617 aa8.99□□□□□ -0.97
SLIRP-203ENST00000554074 ITPK1Q13572 414 aa8.99□□□□□ -0.97
SLIRP-203ENST00000554074 GPR162Q16538 588 aa8.99□□□□□ -0.97
SLIRP-203ENST00000554074 AMIGO3Q86WK7 504 aa8.99□□□□□ -0.97
SLIRP-203ENST00000554074 AEBP1Q8IUX7 1158 aa8.99□□□□□ -0.97
SLIRP-203ENST00000554074 MRC1P22897 1456 aa8.99□□□□□ -0.97
SLIRP-203ENST00000554074 BRCA1P38398 1863 aaKnown RBP8.99□□□□□ -0.97
SLIRP-203ENST00000554074 UBR2Q8IWV8 1755 aa8.99□□□□□ -0.97
SLIRP-203ENST00000554074 KIAA1551Q9HCM1 1747 aa8.98□□□□□ -0.97
SLIRP-203ENST00000554074 MTHFSP49914 203 aa8.98□□□□□ -0.97
SLIRP-203ENST00000554074 C1orf141Q5JVX7 400 aa8.98□□□□□ -0.97
SLIRP-203ENST00000554074 RC3H1Q5TC82 1133 aaKnown RBP8.98□□□□□ -0.97
SLIRP-203ENST00000554074 MSL1Q68DK7 614 aa8.98□□□□□ -0.97
SLIRP-203ENST00000554074 SULT6B1Q6IMI4 303 aa8.98□□□□□ -0.97
SLIRP-203ENST00000554074 KLHL34Q8N239 644 aa8.98□□□□□ -0.97
SLIRP-203ENST00000554074 ZNF784Q8NCA9 323 aaPredicted RBP8.98□□□□□ -0.97
SLIRP-203ENST00000554074 NLGN2Q8NFZ4 835 aa8.98□□□□□ -0.97
SLIRP-203ENST00000554074 UTRNP46939 3433 aa8.98□□□□□ -0.97
SLIRP-203ENST00000554074 SIPA1L3O60292 1781 aaPredicted RBP8.98□□□□□ -0.97
SLIRP-203ENST00000554074 CNTNAP4Q9C0A0 1308 aa8.98□□□□□ -0.97
SLIRP-203ENST00000554074 GOLGB1Q14789 3259 aaKnown RBP8.98□□□□□ -0.97
SLIRP-203ENST00000554074 COL3A1P02461 1466 aaPredicted RBP8.97□□□□□ -0.97
SLIRP-203ENST00000554074 GNPATO15228 680 aa8.97□□□□□ -0.97
SLIRP-203ENST00000554074 GRIN3BO60391 1043 aa8.97□□□□□ -0.97
SLIRP-203ENST00000554074 CABP4P57796 275 aa8.97□□□□□ -0.97
SLIRP-203ENST00000554074 SLC4A9Q96Q91 983 aa8.97□□□□□ -0.97
SLIRP-203ENST00000554074 ARFGEF1Q9Y6D6 1849 aa8.96□□□□□ -0.97
SLIRP-203ENST00000554074 PHF14O94880 888 aa8.96□□□□□ -0.98
SLIRP-203ENST00000554074 AKAP4Q5JQC9 854 aa8.96□□□□□ -0.98
SLIRP-203ENST00000554074 RTCBQ9Y3I0 505 aaKnown RBP8.96□□□□□ -0.98
SLIRP-203ENST00000554074 N4BP2Q86UW6 1770 aaPredicted RBP8.96□□□□□ -0.98
SLIRP-203ENST00000554074 SENP3-EIF4A1A0A087X0R7 540 aa8.95□□□□□ -0.98
SLIRP-203ENST00000554074 DIAPH1O60610 1272 aaKnown RBP8.95□□□□□ -0.98
SLIRP-203ENST00000554074 RPS6KA4O75676 772 aa8.95□□□□□ -0.98
SLIRP-203ENST00000554074 YBX3P16989 372 aaKnown RBP eCLIP8.95□□□□□ -0.98
SLIRP-203ENST00000554074 TRAPPC3LQ5T215 181 aa8.95□□□□□ -0.98
SLIRP-203ENST00000554074 NFATC2IPQ8NCF5 419 aa8.95□□□□□ -0.98
SLIRP-203ENST00000554074 RBM42Q9BTD8 480 aaKnown RBP8.95□□□□□ -0.98
SLIRP-203ENST00000554074 PELP1Q8IZL8 1130 aaKnown RBP8.94□□□□□ -0.98
SLIRP-203ENST00000554074 NLGN1Q8N2Q7 840 aa8.94□□□□□ -0.98
SLIRP-203ENST00000554074 SLC52A2Q9HAB3 445 aa8.94□□□□□ -0.98
SLIRP-203ENST00000554074 AFDNP55196 1824 aaKnown RBP8.94□□□□□ -0.98
SLIRP-203ENST00000554074 MMP10P09238 476 aa8.93□□□□□ -0.98
SLIRP-203ENST00000554074 CC2D1BQ5T0F9 858 aaKnown RBP8.93□□□□□ -0.98
SLIRP-203ENST00000554074 SMIM5Q71RC9 77 aa8.93□□□□□ -0.98
SLIRP-203ENST00000554074 ARHGEF1Q92888 912 aaKnown RBP8.93□□□□□ -0.98
SLIRP-203ENST00000554074 C10orf71Q711Q0 1435 aa8.93□□□□□ -0.98
SLIRP-203ENST00000554074 KCPQ6ZWJ8 1503 aa8.93□□□□□ -0.98
SLIRP-203ENST00000554074 NRXN2Q9P2S2 1712 aa8.92□□□□□ -0.98
SLIRP-203ENST00000554074 RNMTO43148 476 aaKnown RBP8.92□□□□□ -0.98
SLIRP-203ENST00000554074 HMOX1P09601 288 aa8.92□□□□□ -0.98
SLIRP-203ENST00000554074 RFC4P35249 363 aa8.92□□□□□ -0.98
SLIRP-203ENST00000554074 CRKLP46109 303 aaKnown RBP8.92□□□□□ -0.98
SLIRP-203ENST00000554074 DLEC1Q9Y238 1755 aa8.91□□□□□ -0.98
SLIRP-203ENST00000554074 PXDNLA1KZ92 1463 aa8.91□□□□□ -0.98
SLIRP-203ENST00000554074 ADCY9O60503 1353 aa8.91□□□□□ -0.98
SLIRP-203ENST00000554074 PTCD1O75127 700 aaKnown RBP8.91□□□□□ -0.98
SLIRP-203ENST00000554074 GYS1P13807 737 aa8.91□□□□□ -0.98
SLIRP-203ENST00000554074 TGFB2P61812 414 aa8.91□□□□□ -0.98
SLIRP-203ENST00000554074 MTHFSDQ2M296 383 aaKnown RBP8.91□□□□□ -0.98
SLIRP-203ENST00000554074 VSIG10Q8N0Z9 540 aa8.91□□□□□ -0.98
SLIRP-203ENST00000554074 LGR6Q9HBX8 967 aa8.91□□□□□ -0.98
SLIRP-203ENST00000554074 DLG5Q8TDM6 1919 aa8.91□□□□□ -0.98
SLIRP-203ENST00000554074 SBF1O95248 1867 aa8.9□□□□□ -0.98
SLIRP-203ENST00000554074 USP42Q9H9J4 1324 aaKnown RBP8.9□□□□□ -0.98
SLIRP-203ENST00000554074 INTS5Q6P9B9 1019 aaKnown RBP8.9□□□□□ -0.98
SLIRP-203ENST00000554074 GAS2L2Q8NHY3 880 aa8.9□□□□□ -0.98
SLIRP-203ENST00000554074 SOS1Q07889 1333 aaPredicted RBP8.89□□□□□ -0.99
SLIRP-203ENST00000554074 SCN7AQ01118 1682 aa8.89□□□□□ -0.99
SLIRP-203ENST00000554074 IFFO2Q5TF58 517 aa8.89□□□□□ -0.99
SLIRP-203ENST00000554074 CFAP53Q96M91 514 aa8.89□□□□□ -0.99
SLIRP-203ENST00000554074 CCDC87Q9NVE4 849 aa8.89□□□□□ -0.99
SLIRP-203ENST00000554074 PARP3Q9Y6F1 533 aa8.89□□□□□ -0.99
SLIRP-203ENST00000554074 ATP10DQ9P241 1426 aa8.88□□□□□ -0.99
SLIRP-203ENST00000554074 CEMIPQ8WUJ3 1361 aa8.88□□□□□ -0.99
SLIRP-203ENST00000554074 GNAT3A8MTJ3 354 aa8.88□□□□□ -0.99
SLIRP-203ENST00000554074 U2SURPO15042 1029 aaKnown RBP8.88□□□□□ -0.99
SLIRP-203ENST00000554074 GIGYF1O75420 1035 aaPredicted RBP8.88□□□□□ -0.99
SLIRP-203ENST00000554074 CYP19A1P11511 503 aaPredicted RBP8.88□□□□□ -0.99
SLIRP-203ENST00000554074 C1QTNF8P60827 252 aa8.88□□□□□ -0.99
SLIRP-203ENST00000554074 DNAJC10Q8IXB1 793 aa8.88□□□□□ -0.99
SLIRP-203ENST00000554074 CCDC88AQ3V6T2 1871 aa8.87□□□□□ -0.99
SLIRP-203ENST00000554074 BCORQ6W2J9 1755 aa8.87□□□□□ -0.99
SLIRP-203ENST00000554074 SLC39A6Q13433 755 aa8.87□□□□□ -0.99
SLIRP-203ENST00000554074 RSPH6AQ9H0K4 717 aa8.87□□□□□ -0.99
SLIRP-203ENST00000554074 NUDCQ9Y266 331 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms