RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 HOXB7P09629 217 aa33.2■■■□□ 2.91
CCDC88C-205ENST00000553403 RAPGEF4Q8WZA2 1011 aa33.2■■■□□ 2.91
CCDC88C-205ENST00000553403 CHMP4AQ9BY43 222 aa33.2■■■□□ 2.9
CCDC88C-205ENST00000553403 ADAMTS7Q9UKP4 1686 aa33.19■■■□□ 2.9
CCDC88C-205ENST00000553403 CACNA1FO60840 1977 aa33.19■■■□□ 2.9
CCDC88C-205ENST00000553403 MPRIPQ6WCQ1 1025 aa33.19■■■□□ 2.9
CCDC88C-205ENST00000553403 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP33.19■■■□□ 2.9
CCDC88C-205ENST00000553403 TATP17735 454 aaPredicted RBP33.18■■■□□ 2.9
CCDC88C-205ENST00000553403 EIF4A1P60842 406 aaKnown RBP33.18■■■□□ 2.9
CCDC88C-205ENST00000553403 JCADQ9P266 1359 aa33.17■■■□□ 2.9
CCDC88C-205ENST00000553403 CSB-PGBD3P0DP91 1061 aa33.17■■■□□ 2.9
CCDC88C-205ENST00000553403 CHRNA2Q15822 529 aa33.17■■■□□ 2.9
CCDC88C-205ENST00000553403 G2E3Q7L622 706 aa33.17■■■□□ 2.9
CCDC88C-205ENST00000553403 VIRMAQ69YN4 1812 aaKnown RBP33.15■■■□□ 2.9
CCDC88C-205ENST00000553403 BTBD11A6QL63 1104 aa33.15■■■□□ 2.9
CCDC88C-205ENST00000553403 GCC1Q96CN9 775 aa33.15■■■□□ 2.9
CCDC88C-205ENST00000553403 NHSL1Q5SYE7 1610 aa33.15■■■□□ 2.9
CCDC88C-205ENST00000553403 SOCS7O14512 581 aa33.14■■■□□ 2.9
CCDC88C-205ENST00000553403 MSH5O43196 834 aa33.14■■■□□ 2.9
CCDC88C-205ENST00000553403 SPG7Q9UQ90 795 aa33.14■■■□□ 2.9
CCDC88C-205ENST00000553403 CCT4P50991 539 aaKnown RBP33.13■■■□□ 2.89
CCDC88C-205ENST00000553403 C1orf115Q9H7X2 142 aa33.13■■■□□ 2.89
CCDC88C-205ENST00000553403 FLIIQ13045 1269 aa33.12■■■□□ 2.89
CCDC88C-205ENST00000553403 NUCB1Q02818 461 aa33.11■■■□□ 2.89
CCDC88C-205ENST00000553403 HDGFL1Q5TGJ6 251 aa33.11■■■□□ 2.89
CCDC88C-205ENST00000553403 SIPA1L3O60292 1781 aaPredicted RBP33.11■■■□□ 2.89
CCDC88C-205ENST00000553403 MEGF6O75095 1541 aa33.11■■■□□ 2.89
CCDC88C-205ENST00000553403 AHDC1Q5TGY3 1603 aaPredicted RBP33.11■■■□□ 2.89
CCDC88C-205ENST00000553403 COL16A1Q07092 1604 aaPredicted RBP33.1■■■□□ 2.89
CCDC88C-205ENST00000553403 SIRT2Q8IXJ6 389 aa33.09■■■□□ 2.89
CCDC88C-205ENST00000553403 IPO9Q96P70 1041 aaKnown RBP33.09■■■□□ 2.89
CCDC88C-205ENST00000553403 ABCA3Q99758 1704 aa33.08■■■□□ 2.89
CCDC88C-205ENST00000553403 PRDM11Q9NQV5 511 aa33.07■■■□□ 2.89
CCDC88C-205ENST00000553403 RPAP2Q8IXW5 612 aaPredicted RBP33.07■■■□□ 2.88
CCDC88C-205ENST00000553403 KCNQ3O43525 872 aa33.06■■■□□ 2.88
CCDC88C-205ENST00000553403 PHKG2P15735 406 aa33.06■■■□□ 2.88
CCDC88C-205ENST00000553403 PKD1L3Q7Z443 1732 aa33.05■■■□□ 2.88
CCDC88C-205ENST00000553403 NECTIN2Q92692 538 aa33.05■■■□□ 2.88
CCDC88C-205ENST00000553403 PXDNLA1KZ92 1463 aa33.05■■■□□ 2.88
CCDC88C-205ENST00000553403 FKBP5Q13451 457 aaPredicted RBP33.04■■■□□ 2.88
CCDC88C-205ENST00000553403 NPM2Q86SE8 214 aaKnown RBP33.04■■■□□ 2.88
CCDC88C-205ENST00000553403 IFNL2Q8IZJ0 200 aa33.04■■■□□ 2.88
CCDC88C-205ENST00000553403 ANKRD44Q8N8A2 993 aa33.04■■■□□ 2.88
CCDC88C-205ENST00000553403 HEG1Q9ULI3 1381 aa33.04■■■□□ 2.88
CCDC88C-205ENST00000553403 ATP10DQ9P241 1426 aa33.04■■■□□ 2.88
CCDC88C-205ENST00000553403 SCN11AQ9UI33 1791 aa33.04■■■□□ 2.88
CCDC88C-205ENST00000553403 F6X3S4 739 aa33.04■■■□□ 2.88
CCDC88C-205ENST00000553403 CHD1LQ86WJ1 897 aa33.04■■■□□ 2.88
CCDC88C-205ENST00000553403 WDR17Q8IZU2 1322 aa33.03■■■□□ 2.88
CCDC88C-205ENST00000553403 SLC4A10Q6U841 1118 aa33.03■■■□□ 2.88
CCDC88C-205ENST00000553403 N4BP2Q86UW6 1770 aaPredicted RBP33.03■■■□□ 2.88
CCDC88C-205ENST00000553403 MEIS3Q99687 375 aa33.02■■■□□ 2.88
CCDC88C-205ENST00000553403 SPATA31A6Q5VVP1 1343 aa33.02■■■□□ 2.88
CCDC88C-205ENST00000553403 KDM6AO15550 1401 aaPredicted RBP33.02■■■□□ 2.88
CCDC88C-205ENST00000553403 MEX3CQ5U5Q3 659 aaKnown RBP33.01■■■□□ 2.87
CCDC88C-205ENST00000553403 COL5A2P05997 1499 aaPredicted RBP33■■■□□ 2.87
CCDC88C-205ENST00000553403 HSP90AB1P08238 724 aaKnown RBP32.99■■■□□ 2.87
CCDC88C-205ENST00000553403 CEP85Q6P2H3 762 aa32.99■■■□□ 2.87
CCDC88C-205ENST00000553403 EIF2S2P20042 333 aaKnown RBP32.98■■■□□ 2.87
CCDC88C-205ENST00000553403 DCTPP1Q9H773 170 aa32.98■■■□□ 2.87
CCDC88C-205ENST00000553403 SLC52A2Q9HAB3 445 aa32.98■■■□□ 2.87
CCDC88C-205ENST00000553403 MRC1P22897 1456 aa32.97■■■□□ 2.87
CCDC88C-205ENST00000553403 GIGYF1O75420 1035 aaPredicted RBP32.97■■■□□ 2.87
CCDC88C-205ENST00000553403 ANKRD45Q5TZF3 282 aa32.97■■■□□ 2.87
CCDC88C-205ENST00000553403 DCAF5Q96JK2 942 aa32.97■■■□□ 2.87
CCDC88C-205ENST00000553403 LNPKQ9C0E8 428 aa32.96■■■□□ 2.87
CCDC88C-205ENST00000553403 PARP4Q9UKK3 1724 aaKnown RBP32.96■■■□□ 2.87
CCDC88C-205ENST00000553403 RGS17Q9UGC6 210 aaPredicted RBP32.95■■■□□ 2.87
CCDC88C-205ENST00000553403 GNAI3P08754 354 aa32.94■■■□□ 2.86
CCDC88C-205ENST00000553403 CHPF2Q9P2E5 772 aa32.94■■■□□ 2.86
CCDC88C-205ENST00000553403 NUTM2BA6NNL0 878 aaPredicted RBP32.94■■■□□ 2.86
CCDC88C-205ENST00000553403 NUTM2EB1AL46 878 aaPredicted RBP32.94■■■□□ 2.86
CCDC88C-205ENST00000553403 CYP27B1O15528 508 aa32.94■■■□□ 2.86
CCDC88C-205ENST00000553403 TOM1L2Q6ZVM7 507 aa32.94■■■□□ 2.86
CCDC88C-205ENST00000553403 NUTM2AQ8IVF1 878 aaPredicted RBP32.94■■■□□ 2.86
CCDC88C-205ENST00000553403 DDRGK1Q96HY6 314 aa32.94■■■□□ 2.86
CCDC88C-205ENST00000553403 PHAXQ9H814 394 aaKnown RBP32.94■■■□□ 2.86
CCDC88C-205ENST00000553403 DBF4Q9UBU7 674 aaPredicted RBP32.93■■■□□ 2.86
CCDC88C-205ENST00000553403 NOP58Q9Y2X3 529 aaKnown RBP32.93■■■□□ 2.86
CCDC88C-205ENST00000553403 CARD10Q9BWT7 1032 aa32.92■■■□□ 2.86
CCDC88C-205ENST00000553403 GNAI2P04899 355 aa32.91■■■□□ 2.86
CCDC88C-205ENST00000553403 HMMRO75330 724 aa32.91■■■□□ 2.86
CCDC88C-205ENST00000553403 ZNF790Q6PG37 636 aa32.9■■■□□ 2.86
CCDC88C-205ENST00000553403 ZBTB47Q9UFB7 747 aaPredicted RBP32.9■■■□□ 2.86
CCDC88C-205ENST00000553403 ERICH6Q7L0X2 663 aa32.89■■■□□ 2.86
CCDC88C-205ENST00000553403 NFATC2IPQ8NCF5 419 aa32.87■■■□□ 2.85
CCDC88C-205ENST00000553403 ZCRB1Q8TBF4 217 aaKnown RBP32.86■■■□□ 2.85
CCDC88C-205ENST00000553403 PCDH11XQ9BZA7 1347 aa32.86■■■□□ 2.85
CCDC88C-205ENST00000553403 PCDH11YQ9BZA8 1340 aa32.86■■■□□ 2.85
CCDC88C-205ENST00000553403 DNAAF4Q8WXU2 420 aa32.85■■■□□ 2.85
CCDC88C-205ENST00000553403 LRP6O75581 1613 aa32.84■■■□□ 2.85
CCDC88C-205ENST00000553403 EVA1CP58658 441 aa32.84■■■□□ 2.85
CCDC88C-205ENST00000553403 POTEAQ6S8J7 498 aa32.84■■■□□ 2.85
CCDC88C-205ENST00000553403 SRCIN1Q9C0H9 1055 aa32.84■■■□□ 2.85
CCDC88C-205ENST00000553403 HYPKQ9NX55 129 aa32.84■■■□□ 2.85
CCDC88C-205ENST00000553403 SEC24BO95487 1268 aa32.83■■■□□ 2.85
CCDC88C-205ENST00000553403 IL2RBP14784 551 aa32.83■■■□□ 2.85
CCDC88C-205ENST00000553403 SLC39A6Q13433 755 aa32.82■■■□□ 2.84
CCDC88C-205ENST00000553403 BMP2KLQ5H9B9 411 aa32.82■■■□□ 2.84
CCDC88C-205ENST00000553403 USP44Q9H0E7 712 aa32.82■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms