RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 MRPL58Q14197 206 aaKnown RBP8.83□□□□□ -1
SCFD1-208ENST00000553278 GAS2L2Q8NHY3 880 aa8.83□□□□□ -1
SCFD1-208ENST00000553278 TMC1Q8TDI8 760 aa8.83□□□□□ -1
SCFD1-208ENST00000553278 KCTD15Q96SI1 283 aaPredicted RBP8.83□□□□□ -1
SCFD1-208ENST00000553278 PPP1R1BQ9UD71 204 aaPredicted RBP8.83□□□□□ -1
SCFD1-208ENST00000553278 CDK11AQ9UQ88 783 aaPredicted RBP8.83□□□□□ -1
SCFD1-208ENST00000553278 MPSTP25325 297 aa8.82□□□□□ -1
SCFD1-208ENST00000553278 CANXP27824 592 aaKnown RBP8.82□□□□□ -1
SCFD1-208ENST00000553278 XPCQ01831 940 aaPredicted RBP8.82□□□□□ -1
SCFD1-208ENST00000553278 NYAP1Q6ZVC0 841 aa8.82□□□□□ -1
SCFD1-208ENST00000553278 TMEM229AB2RXF0 380 aa8.81□□□□□ -1
SCFD1-208ENST00000553278 TREHO43280 583 aa8.81□□□□□ -1
SCFD1-208ENST00000553278 FMR1Q06787 632 aaKnown RBP eCLIP8.81□□□□□ -1
SCFD1-208ENST00000553278 AAMPQ13685 434 aa8.81□□□□□ -1
SCFD1-208ENST00000553278 ALKBH2Q6NS38 261 aa8.81□□□□□ -1
SCFD1-208ENST00000553278 HCSTQ9UBK5 93 aa8.81□□□□□ -1
SCFD1-208ENST00000553278 ATAD2Q6PL18 1390 aa8.81□□□□□ -1
SCFD1-208ENST00000553278 PLCB3Q01970 1234 aa8.8□□□□□ -1
SCFD1-208ENST00000553278 C16orf46Q6P387 395 aa8.8□□□□□ -1
SCFD1-208ENST00000553278 DMRTB1Q96MA1 342 aa8.8□□□□□ -1
SCFD1-208ENST00000553278 MRS2Q9HD23 443 aa8.8□□□□□ -1
SCFD1-208ENST00000553278 WASLO00401 505 aaPredicted RBP8.79□□□□□ -1
SCFD1-208ENST00000553278 LDHBP07195 334 aaKnown RBP8.79□□□□□ -1
SCFD1-208ENST00000553278 SCTRP47872 440 aa8.79□□□□□ -1
SCFD1-208ENST00000553278 GDF10P55107 478 aa8.79□□□□□ -1
SCFD1-208ENST00000553278 HDLBPQ00341 1268 aaKnown RBP8.79□□□□□ -1
SCFD1-208ENST00000553278 CC2D2BQ6DHV5 1058 aa8.79□□□□□ -1
SCFD1-208ENST00000553278 TNS4Q8IZW8 715 aa8.79□□□□□ -1
SCFD1-208ENST00000553278 CHMP7Q8WUX9 453 aaPredicted RBP8.79□□□□□ -1
SCFD1-208ENST00000553278 MTRQ99707 1265 aa8.79□□□□□ -1
SCFD1-208ENST00000553278 FCF1Q9Y324 198 aaKnown RBP8.79□□□□□ -1
SCFD1-208ENST00000553278 ERVH48-1M5A8F1 160 aa8.78□□□□□ -1
SCFD1-208ENST00000553278 PRPF40AO75400 957 aaKnown RBP8.78□□□□□ -1
SCFD1-208ENST00000553278 MAPK8P45983 427 aa8.78□□□□□ -1
SCFD1-208ENST00000553278 ERVK-9P63128 1117 aa8.78□□□□□ -1
SCFD1-208ENST00000553278 SH3BP2P78314 561 aa8.78□□□□□ -1
SCFD1-208ENST00000553278 PRKD2Q9BZL6 878 aa8.78□□□□□ -1
SCFD1-208ENST00000553278 SCNN1DP51172 638 aa8.77□□□□□ -1.01
SCFD1-208ENST00000553278 ATP2B2Q01814 1243 aa8.77□□□□□ -1.01
SCFD1-208ENST00000553278 PDE3BQ13370 1112 aa8.77□□□□□ -1.01
SCFD1-208ENST00000553278 INTS6LQ5JSJ4 861 aaKnown RBP8.77□□□□□ -1.01
SCFD1-208ENST00000553278 THSD4Q6ZMP0 1018 aa8.77□□□□□ -1.01
SCFD1-208ENST00000553278 VASH1Q7L8A9 365 aaPredicted RBP8.77□□□□□ -1.01
SCFD1-208ENST00000553278 TMEM87AQ8NBN3 555 aa8.77□□□□□ -1.01
SCFD1-208ENST00000553278 IL21Q9HBE4 155 aa8.77□□□□□ -1.01
SCFD1-208ENST00000553278 PARP2Q9UGN5 583 aa8.77□□□□□ -1.01
SCFD1-208ENST00000553278 MAP4K5Q9Y4K4 846 aa8.77□□□□□ -1.01
SCFD1-208ENST00000553278 PPP1R12BO60237 982 aaPredicted RBP8.76□□□□□ -1.01
SCFD1-208ENST00000553278 INHAP05111 366 aa8.76□□□□□ -1.01
SCFD1-208ENST00000553278 EIF1AXP47813 144 aaKnown RBP8.76□□□□□ -1.01
SCFD1-208ENST00000553278 EHHADHQ08426 723 aa8.76□□□□□ -1.01
SCFD1-208ENST00000553278 DSC3Q14574 896 aa8.76□□□□□ -1.01
SCFD1-208ENST00000553278 C9orf131Q5VYM1 1079 aa8.76□□□□□ -1.01
SCFD1-208ENST00000553278 TSPAN10Q9H1Z9 355 aaPredicted RBP8.76□□□□□ -1.01
SCFD1-208ENST00000553278 STIM2Q9P246 746 aa8.76□□□□□ -1.01
SCFD1-208ENST00000553278 SERTAD1Q9UHV2 236 aa8.76□□□□□ -1.01
SCFD1-208ENST00000553278 SORBS3O60504 671 aa8.75□□□□□ -1.01
SCFD1-208ENST00000553278 VARSP26640 1264 aaKnown RBP8.75□□□□□ -1.01
SCFD1-208ENST00000553278 STAG2Q8N3U4 1231 aa8.75□□□□□ -1.01
SCFD1-208ENST00000553278 PIK3R5Q8WYR1 880 aa8.75□□□□□ -1.01
SCFD1-208ENST00000553278 DUSP9Q99956 384 aaKnown RBP8.75□□□□□ -1.01
SCFD1-208ENST00000553278 SAP130Q9H0E3 1048 aa8.75□□□□□ -1.01
SCFD1-208ENST00000553278 ZBTB24O43167 697 aaPredicted RBP8.74□□□□□ -1.01
SCFD1-208ENST00000553278 S1PR4O95977 384 aa8.74□□□□□ -1.01
SCFD1-208ENST00000553278 EPHA4P54764 986 aa8.74□□□□□ -1.01
SCFD1-208ENST00000553278 PSMD2Q13200 908 aa8.74□□□□□ -1.01
SCFD1-208ENST00000553278 TMC4Q7Z404 712 aa8.74□□□□□ -1.01
SCFD1-208ENST00000553278 ABTB2Q8N961 1025 aa8.74□□□□□ -1.01
SCFD1-208ENST00000553278 SPATA32Q96LK8 384 aa8.74□□□□□ -1.01
SCFD1-208ENST00000553278 OSBPL3Q9H4L5 887 aa8.74□□□□□ -1.01
SCFD1-208ENST00000553278 CCDC87Q9NVE4 849 aa8.74□□□□□ -1.01
SCFD1-208ENST00000553278 VTI1BQ9UEU0 232 aa8.74□□□□□ -1.01
SCFD1-208ENST00000553278 FZD6O60353 706 aa8.73□□□□□ -1.01
SCFD1-208ENST00000553278 DHX9Q08211 1270 aaKnown RBP8.73□□□□□ -1.01
SCFD1-208ENST00000553278 ZNF516Q92618 1163 aa8.73□□□□□ -1.01
SCFD1-208ENST00000553278 SLC4A9Q96Q91 983 aa8.73□□□□□ -1.01
SCFD1-208ENST00000553278 FAM129BQ96TA1 746 aa8.73□□□□□ -1.01
SCFD1-208ENST00000553278 METTL5Q9NRN9 209 aaKnown RBP8.73□□□□□ -1.01
SCFD1-208ENST00000553278 CHMP3Q9Y3E7 222 aa8.73□□□□□ -1.01
SCFD1-208ENST00000553278 A0A1W2PRU2 124 aa8.72□□□□□ -1.01
SCFD1-208ENST00000553278 SMARCA5O60264 1052 aaPredicted RBP8.72□□□□□ -1.01
SCFD1-208ENST00000553278 DAB2P98082 770 aa8.72□□□□□ -1.01
SCFD1-208ENST00000553278 ESCO1Q5FWF5 840 aa8.72□□□□□ -1.01
SCFD1-208ENST00000553278 TJAP1Q5JTD0 557 aa8.72□□□□□ -1.01
SCFD1-208ENST00000553278 COX20Q5RI15 118 aa8.72□□□□□ -1.01
SCFD1-208ENST00000553278 LDLRAD1Q5T700 205 aa8.72□□□□□ -1.01
SCFD1-208ENST00000553278 CYP2U1Q7Z449 544 aa8.72□□□□□ -1.01
SCFD1-208ENST00000553278 NT5DC4Q86YG4 428 aa8.72□□□□□ -1.01
SCFD1-208ENST00000553278 RNF34Q969K3 372 aa8.72□□□□□ -1.01
SCFD1-208ENST00000553278 ALKBH8Q96BT7 664 aaKnown RBP8.72□□□□□ -1.01
SCFD1-208ENST00000553278 FAM161BQ96MY7 647 aa8.72□□□□□ -1.01
SCFD1-208ENST00000553278 C2orf49Q9BVC5 232 aaPredicted RBP8.72□□□□□ -1.01
SCFD1-208ENST00000553278 ETNK1Q9HBU6 452 aa8.72□□□□□ -1.01
SCFD1-208ENST00000553278 CYLDQ9NQC7 956 aa8.72□□□□□ -1.01
SCFD1-208ENST00000553278 TNFRSF10BO14763 440 aa8.71□□□□□ -1.02
SCFD1-208ENST00000553278 STAU1O95793 577 aaKnown RBP8.71□□□□□ -1.02
SCFD1-208ENST00000553278 SCHIP1Q9P0W5 487 aaPredicted RBP8.71□□□□□ -1.02
SCFD1-208ENST00000553278 GNRH1P01148 92 aa8.7□□□□□ -1.02
SCFD1-208ENST00000553278 PSMA6P60900 246 aaKnown RBP8.7□□□□□ -1.02
SCFD1-208ENST00000553278 FOXK2Q01167 660 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms