RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 ARFGEF1Q9Y6D6 1849 aa20.55■□□□□ 0.88
VPS29-209ENST00000551655 TNRC6CQ9HCJ0 1690 aaKnown RBP20.55■□□□□ 0.88
VPS29-209ENST00000551655 PLEKHG2Q9H7P9 1386 aa20.55■□□□□ 0.88
VPS29-209ENST00000551655 C4AP0C0L4 1744 aa20.54■□□□□ 0.88
VPS29-209ENST00000551655 HMGB2P26583 209 aaKnown RBP20.54■□□□□ 0.88
VPS29-209ENST00000551655 RTL1A6NKG5 1358 aa20.54■□□□□ 0.88
VPS29-209ENST00000551655 SIN3AQ96ST3 1273 aa20.53■□□□□ 0.88
VPS29-209ENST00000551655 RNF181Q9P0P0 153 aa20.53■□□□□ 0.88
VPS29-209ENST00000551655 KCNA3P22001 575 aa20.52■□□□□ 0.88
VPS29-209ENST00000551655 KDM2BQ8NHM5 1336 aa20.52■□□□□ 0.87
VPS29-209ENST00000551655 ASAP1Q9ULH1 1129 aa20.51■□□□□ 0.87
VPS29-209ENST00000551655 SMG6Q86US8 1419 aaKnown RBP20.51■□□□□ 0.87
VPS29-209ENST00000551655 SLC34A2O95436 690 aa20.5■□□□□ 0.87
VPS29-209ENST00000551655 HSP90AB2PQ58FF8 381 aa20.5■□□□□ 0.87
VPS29-209ENST00000551655 SMC1BQ8NDV3 1235 aa20.5■□□□□ 0.87
VPS29-209ENST00000551655 SBF1O95248 1867 aa20.5■□□□□ 0.87
VPS29-209ENST00000551655 ATP6V1AP38606 617 aa20.49■□□□□ 0.87
VPS29-209ENST00000551655 CCDC87Q9NVE4 849 aa20.48■□□□□ 0.87
VPS29-209ENST00000551655 TMF1P82094 1093 aa20.47■□□□□ 0.87
VPS29-209ENST00000551655 DCAF5Q96JK2 942 aa20.47■□□□□ 0.87
VPS29-209ENST00000551655 GGNBP2Q9H3C7 697 aa20.46■□□□□ 0.87
VPS29-209ENST00000551655 GYS1P13807 737 aa20.45■□□□□ 0.86
VPS29-209ENST00000551655 NEUROD1Q13562 356 aa20.45■□□□□ 0.86
VPS29-209ENST00000551655 TRAPPC3LQ5T215 181 aa20.45■□□□□ 0.86
VPS29-209ENST00000551655 NLGN1Q8N2Q7 840 aa20.45■□□□□ 0.86
VPS29-209ENST00000551655 ARHGEF1Q92888 912 aaKnown RBP20.45■□□□□ 0.86
VPS29-209ENST00000551655 CARD11Q9BXL7 1154 aa20.45■□□□□ 0.86
VPS29-209ENST00000551655 NKX1-1Q15270 411 aaPredicted RBP20.44■□□□□ 0.86
VPS29-209ENST00000551655 TMOD3Q9NYL9 352 aa20.44■□□□□ 0.86
VPS29-209ENST00000551655 INSRP06213 1382 aa20.44■□□□□ 0.86
VPS29-209ENST00000551655 PIAS4Q8N2W9 510 aaPredicted RBP20.43■□□□□ 0.86
VPS29-209ENST00000551655 SLC4A9Q96Q91 983 aa20.43■□□□□ 0.86
VPS29-209ENST00000551655 ATG3Q9NT62 314 aa20.43■□□□□ 0.86
VPS29-209ENST00000551655 PIM2Q9P1W9 311 aa20.43■□□□□ 0.86
VPS29-209ENST00000551655 RTCBQ9Y3I0 505 aaKnown RBP20.43■□□□□ 0.86
VPS29-209ENST00000551655 PARP3Q9Y6F1 533 aa20.43■□□□□ 0.86
VPS29-209ENST00000551655 COL5A3P25940 1745 aaPredicted RBP20.42■□□□□ 0.86
VPS29-209ENST00000551655 CHRNA5P30532 468 aa20.42■□□□□ 0.86
VPS29-209ENST00000551655 RASSF7Q02833 373 aa20.42■□□□□ 0.86
VPS29-209ENST00000551655 DALRD3Q5D0E6 543 aaKnown RBP20.42■□□□□ 0.86
VPS29-209ENST00000551655 KDRP35968 1356 aa20.42■□□□□ 0.86
VPS29-209ENST00000551655 FYB1O15117 783 aa20.4■□□□□ 0.86
VPS29-209ENST00000551655 FLT4P35916 1363 aa20.4■□□□□ 0.86
VPS29-209ENST00000551655 MYH14Q7Z406 1995 aaKnown RBP20.38■□□□□ 0.85
VPS29-209ENST00000551655 RFC4P35249 363 aa20.38■□□□□ 0.85
VPS29-209ENST00000551655 TIAM2Q8IVF5 1701 aa20.38■□□□□ 0.85
VPS29-209ENST00000551655 DDR1Q08345 913 aa20.37■□□□□ 0.85
VPS29-209ENST00000551655 RBM42Q9BTD8 480 aaKnown RBP20.37■□□□□ 0.85
VPS29-209ENST00000551655 SRP68Q9UHB9 627 aaKnown RBP20.37■□□□□ 0.85
VPS29-209ENST00000551655 SPG7Q9UQ90 795 aa20.37■□□□□ 0.85
VPS29-209ENST00000551655 KIF20BQ96Q89 1820 aa20.37■□□□□ 0.85
VPS29-209ENST00000551655 NCAPD2Q15021 1401 aa20.36■□□□□ 0.85
VPS29-209ENST00000551655 PUS7Q96PZ0 661 aaKnown RBP20.36■□□□□ 0.85
VPS29-209ENST00000551655 MKRN1Q9UHC7 482 aaKnown RBP20.36■□□□□ 0.85
VPS29-209ENST00000551655 EMILIN1Q9Y6C2 1016 aa20.36■□□□□ 0.85
VPS29-209ENST00000551655 FOXN1O15353 648 aa20.35■□□□□ 0.85
VPS29-209ENST00000551655 VEGFAP15692 232 aaPredicted RBP20.35■□□□□ 0.85
VPS29-209ENST00000551655 CCDC88AQ3V6T2 1871 aa20.35■□□□□ 0.85
VPS29-209ENST00000551655 PHKG2P15735 406 aa20.34■□□□□ 0.85
VPS29-209ENST00000551655 ADRA2BP18089 450 aa20.34■□□□□ 0.85
VPS29-209ENST00000551655 FKBP8Q14318 412 aa20.34■□□□□ 0.85
VPS29-209ENST00000551655 ZNF831Q5JPB2 1677 aa20.34■□□□□ 0.85
VPS29-209ENST00000551655 KDM6AO15550 1401 aaPredicted RBP20.34■□□□□ 0.85
VPS29-209ENST00000551655 GLTPD2A6NH11 291 aa20.33■□□□□ 0.85
VPS29-209ENST00000551655 RPS6KA4O75676 772 aa20.33■□□□□ 0.85
VPS29-209ENST00000551655 TESK2Q96S53 571 aa20.33■□□□□ 0.85
VPS29-209ENST00000551655 CNTNAP4Q9C0A0 1308 aa20.32■□□□□ 0.84
VPS29-209ENST00000551655 POTECB2RU33 542 aa20.31■□□□□ 0.84
VPS29-209ENST00000551655 RC3H1Q5TC82 1133 aaKnown RBP20.31■□□□□ 0.84
VPS29-209ENST00000551655 IFNL2Q8IZJ0 200 aa20.3■□□□□ 0.84
VPS29-209ENST00000551655 ZC3H4Q9UPT8 1303 aaKnown RBP20.29■□□□□ 0.84
VPS29-209ENST00000551655 PPM1GO15355 546 aaPredicted RBP20.29■□□□□ 0.84
VPS29-209ENST00000551655 FAM161AQ3B820 660 aa20.29■□□□□ 0.84
VPS29-209ENST00000551655 EYA1Q99502 592 aa20.29■□□□□ 0.84
VPS29-209ENST00000551655 KIF24Q5T7B8 1368 aa20.29■□□□□ 0.84
VPS29-209ENST00000551655 ST20-MTHFSA0A0A6YYL1 179 aa20.28■□□□□ 0.84
VPS29-209ENST00000551655 LMNB1P20700 586 aa20.28■□□□□ 0.84
VPS29-209ENST00000551655 USP42Q9H9J4 1324 aaKnown RBP20.27■□□□□ 0.84
VPS29-209ENST00000551655 TONSLQ96HA7 1378 aa20.27■□□□□ 0.84
VPS29-209ENST00000551655 POLRMTO00411 1230 aaKnown RBP20.27■□□□□ 0.84
VPS29-209ENST00000551655 ANKRD26Q9UPS8 1709 aa20.27■□□□□ 0.83
VPS29-209ENST00000551655 ADAMTS7Q9UKP4 1686 aa20.26■□□□□ 0.83
VPS29-209ENST00000551655 AFDNP55196 1824 aaKnown RBP20.26■□□□□ 0.83
VPS29-209ENST00000551655 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.26■□□□□ 0.83
VPS29-209ENST00000551655 DLEC1Q9Y238 1755 aa20.26■□□□□ 0.83
VPS29-209ENST00000551655 TJP1Q07157 1748 aa20.25■□□□□ 0.83
VPS29-209ENST00000551655 POTEIP0CG38 1075 aa20.25■□□□□ 0.83
VPS29-209ENST00000551655 POTEJP0CG39 1038 aa20.25■□□□□ 0.83
VPS29-209ENST00000551655 CRKLP46109 303 aaKnown RBP20.25■□□□□ 0.83
VPS29-209ENST00000551655 CREBZFQ9NS37 354 aa20.25■□□□□ 0.83
VPS29-209ENST00000551655 NFKBIEO00221 500 aa20.24■□□□□ 0.83
VPS29-209ENST00000551655 PRDM10Q9NQV6 1147 aa20.24■□□□□ 0.83
VPS29-209ENST00000551655 PTCD1O75127 700 aaKnown RBP20.23■□□□□ 0.83
VPS29-209ENST00000551655 TM4SF1P30408 202 aa20.23■□□□□ 0.83
VPS29-209ENST00000551655 CNTNAP1P78357 1384 aa20.21■□□□□ 0.83
VPS29-209ENST00000551655 LBX1P52954 281 aa20.2■□□□□ 0.82
VPS29-209ENST00000551655 USPL1Q5W0Q7 1092 aa20.2■□□□□ 0.82
VPS29-209ENST00000551655 CHADLQ6NUI6 762 aa20.2■□□□□ 0.82
VPS29-209ENST00000551655 NRXN2Q9P2S2 1712 aa20.19■□□□□ 0.82
VPS29-209ENST00000551655 ERVV-2B6SEH9 535 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms