RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 KIAA1551Q9HCM1 1747 aa19.42■□□□□ 0.7
SMARCA4-206ENST00000538456 IFNL2Q8IZJ0 200 aa19.42■□□□□ 0.7
SMARCA4-206ENST00000538456 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.42■□□□□ 0.7
SMARCA4-206ENST00000538456 PXDNLA1KZ92 1463 aa19.41■□□□□ 0.7
SMARCA4-206ENST00000538456 ATG3Q9NT62 314 aa19.41■□□□□ 0.7
SMARCA4-206ENST00000538456 TNNT2P45379 298 aaPredicted RBP19.4■□□□□ 0.7
SMARCA4-206ENST00000538456 KIF3CO14782 793 aa19.39■□□□□ 0.69
SMARCA4-206ENST00000538456 POLKQ9UBT6 870 aa19.39■□□□□ 0.69
SMARCA4-206ENST00000538456 KDRP35968 1356 aa19.39■□□□□ 0.69
SMARCA4-206ENST00000538456 COL5A3P25940 1745 aaPredicted RBP19.39■□□□□ 0.69
SMARCA4-206ENST00000538456 EIF4A2Q14240 407 aaKnown RBP19.38■□□□□ 0.69
SMARCA4-206ENST00000538456 RBM42Q9BTD8 480 aaKnown RBP19.38■□□□□ 0.69
SMARCA4-206ENST00000538456 BCS1LQ9Y276 419 aa19.38■□□□□ 0.69
SMARCA4-206ENST00000538456 RTCBQ9Y3I0 505 aaKnown RBP19.38■□□□□ 0.69
SMARCA4-206ENST00000538456 A0A0G2JLW4 131 aa19.37■□□□□ 0.69
SMARCA4-206ENST00000538456 TRAPPC3LQ5T215 181 aa19.37■□□□□ 0.69
SMARCA4-206ENST00000538456 POLR3GLQ9BT43 218 aa19.37■□□□□ 0.69
SMARCA4-206ENST00000538456 C4AP0C0L4 1744 aa19.37■□□□□ 0.69
SMARCA4-206ENST00000538456 C10orf71Q711Q0 1435 aa19.36■□□□□ 0.69
SMARCA4-206ENST00000538456 ZNF831Q5JPB2 1677 aa19.36■□□□□ 0.69
SMARCA4-206ENST00000538456 SLC4A9Q96Q91 983 aa19.35■□□□□ 0.69
SMARCA4-206ENST00000538456 BRCA1P38398 1863 aaKnown RBP19.35■□□□□ 0.69
SMARCA4-206ENST00000538456 NLGN1Q8N2Q7 840 aa19.34■□□□□ 0.69
SMARCA4-206ENST00000538456 MYH14Q7Z406 1995 aaKnown RBP19.33■□□□□ 0.69
SMARCA4-206ENST00000538456 TGFB2P61812 414 aa19.33■□□□□ 0.68
SMARCA4-206ENST00000538456 ARHGAP27Q6ZUM4 889 aa19.33■□□□□ 0.68
SMARCA4-206ENST00000538456 ARHGEF1Q92888 912 aaKnown RBP19.33■□□□□ 0.68
SMARCA4-206ENST00000538456 ERVV-2B6SEH9 535 aa19.32■□□□□ 0.68
SMARCA4-206ENST00000538456 DPEP1P16444 411 aa19.32■□□□□ 0.68
SMARCA4-206ENST00000538456 RFC4P35249 363 aa19.32■□□□□ 0.68
SMARCA4-206ENST00000538456 CCDC87Q9NVE4 849 aa19.32■□□□□ 0.68
SMARCA4-206ENST00000538456 KDM6AO15550 1401 aaPredicted RBP19.32■□□□□ 0.68
SMARCA4-206ENST00000538456 CNTNAP4Q9C0A0 1308 aa19.31■□□□□ 0.68
SMARCA4-206ENST00000538456 FCHSD2O94868 740 aa19.31■□□□□ 0.68
SMARCA4-206ENST00000538456 GYS1P13807 737 aa19.31■□□□□ 0.68
SMARCA4-206ENST00000538456 ADRA2BP18089 450 aa19.31■□□□□ 0.68
SMARCA4-206ENST00000538456 DCAF5Q96JK2 942 aa19.31■□□□□ 0.68
SMARCA4-206ENST00000538456 HSP90AB1P08238 724 aaKnown RBP19.3■□□□□ 0.68
SMARCA4-206ENST00000538456 ZNF530Q6P9A1 599 aaPredicted RBP19.3■□□□□ 0.68
SMARCA4-206ENST00000538456 PARP3Q9Y6F1 533 aa19.3■□□□□ 0.68
SMARCA4-206ENST00000538456 PLEKHG2Q9H7P9 1386 aa19.3■□□□□ 0.68
SMARCA4-206ENST00000538456 ARFGEF1Q9Y6D6 1849 aa19.3■□□□□ 0.68
SMARCA4-206ENST00000538456 RPS6KA4O75676 772 aa19.29■□□□□ 0.68
SMARCA4-206ENST00000538456 APLP1P51693 650 aa19.29■□□□□ 0.68
SMARCA4-206ENST00000538456 CABP4P57796 275 aa19.29■□□□□ 0.68
SMARCA4-206ENST00000538456 RC3H1Q5TC82 1133 aaKnown RBP19.29■□□□□ 0.68
SMARCA4-206ENST00000538456 NMRK2Q9NPI5 230 aa19.29■□□□□ 0.68
SMARCA4-206ENST00000538456 PTCD1O75127 700 aaKnown RBP19.28■□□□□ 0.68
SMARCA4-206ENST00000538456 TOMM70O94826 608 aa19.28■□□□□ 0.68
SMARCA4-206ENST00000538456 PLEKHO1Q53GL0 409 aaPredicted RBP19.28■□□□□ 0.68
SMARCA4-206ENST00000538456 TJP1Q07157 1748 aa19.26■□□□□ 0.67
SMARCA4-206ENST00000538456 SRP68Q9UHB9 627 aaKnown RBP19.26■□□□□ 0.67
SMARCA4-206ENST00000538456 CRKLP46109 303 aaKnown RBP19.25■□□□□ 0.67
SMARCA4-206ENST00000538456 MTHFSP49914 203 aa19.25■□□□□ 0.67
SMARCA4-206ENST00000538456 C1orf141Q5JVX7 400 aa19.25■□□□□ 0.67
SMARCA4-206ENST00000538456 C9orf131Q5VYM1 1079 aa19.25■□□□□ 0.67
SMARCA4-206ENST00000538456 AEBP1Q8IUX7 1158 aa19.25■□□□□ 0.67
SMARCA4-206ENST00000538456 WDR90Q96KV7 1748 aa19.25■□□□□ 0.67
SMARCA4-206ENST00000538456 KCNA3P22001 575 aa19.24■□□□□ 0.67
SMARCA4-206ENST00000538456 AMOTQ4VCS5 1084 aa19.24■□□□□ 0.67
SMARCA4-206ENST00000538456 FKBP8Q14318 412 aa19.23■□□□□ 0.67
SMARCA4-206ENST00000538456 PIM2Q9P1W9 311 aa19.23■□□□□ 0.67
SMARCA4-206ENST00000538456 SCN11AQ9UI33 1791 aa19.22■□□□□ 0.67
SMARCA4-206ENST00000538456 DDR1Q08345 913 aa19.22■□□□□ 0.67
SMARCA4-206ENST00000538456 C16orf71Q8IYS4 520 aaPredicted RBP19.22■□□□□ 0.67
SMARCA4-206ENST00000538456 NFATC2IPQ8NCF5 419 aa19.22■□□□□ 0.67
SMARCA4-206ENST00000538456 USP42Q9H9J4 1324 aaKnown RBP19.22■□□□□ 0.67
SMARCA4-206ENST00000538456 KCPQ6ZWJ8 1503 aa19.21■□□□□ 0.67
SMARCA4-206ENST00000538456 DALRD3Q5D0E6 543 aaKnown RBP19.21■□□□□ 0.67
SMARCA4-206ENST00000538456 DNAJC5GQ8N7S2 189 aa19.21■□□□□ 0.67
SMARCA4-206ENST00000538456 PANK3Q9H999 370 aa19.21■□□□□ 0.67
SMARCA4-206ENST00000538456 CHRNA5P30532 468 aa19.2■□□□□ 0.66
SMARCA4-206ENST00000538456 TRIM26Q12899 539 aaPredicted RBP19.2■□□□□ 0.66
SMARCA4-206ENST00000538456 RNF181Q9P0P0 153 aa19.2■□□□□ 0.66
SMARCA4-206ENST00000538456 ADAMTS7Q9UKP4 1686 aa19.2■□□□□ 0.66
SMARCA4-206ENST00000538456 SBF1O95248 1867 aa19.2■□□□□ 0.66
SMARCA4-206ENST00000538456 HTRA3P83110 453 aa19.19■□□□□ 0.66
SMARCA4-206ENST00000538456 SULT6B1Q6IMI4 303 aa19.19■□□□□ 0.66
SMARCA4-206ENST00000538456 RBM46Q8TBY0 533 aaKnown RBP19.19■□□□□ 0.66
SMARCA4-206ENST00000538456 TNRC6CQ9HCJ0 1690 aaKnown RBP19.18■□□□□ 0.66
SMARCA4-206ENST00000538456 MORC1Q86VD1 984 aa19.18■□□□□ 0.66
SMARCA4-206ENST00000538456 TIMELESSQ9UNS1 1208 aa19.18■□□□□ 0.66
SMARCA4-206ENST00000538456 VIRMAQ69YN4 1812 aaKnown RBP19.18■□□□□ 0.66
SMARCA4-206ENST00000538456 INTS5Q6P9B9 1019 aaKnown RBP19.17■□□□□ 0.66
SMARCA4-206ENST00000538456 KDM2BQ8NHM5 1336 aa19.17■□□□□ 0.66
SMARCA4-206ENST00000538456 AFDNP55196 1824 aaKnown RBP19.16■□□□□ 0.66
SMARCA4-206ENST00000538456 POLRMTO00411 1230 aaKnown RBP19.16■□□□□ 0.66
SMARCA4-206ENST00000538456 ZPR1O75312 459 aa19.15■□□□□ 0.66
SMARCA4-206ENST00000538456 HSPA5P11021 654 aaKnown RBP19.15■□□□□ 0.66
SMARCA4-206ENST00000538456 USPL1Q5W0Q7 1092 aa19.15■□□□□ 0.66
SMARCA4-206ENST00000538456 DNAJC10Q8IXB1 793 aa19.15■□□□□ 0.66
SMARCA4-206ENST00000538456 EIF4G2P78344 907 aaKnown RBP eCLIP19.14■□□□□ 0.65
SMARCA4-206ENST00000538456 RRAGCQ9HB90 399 aa19.14■□□□□ 0.65
SMARCA4-206ENST00000538456 PCNTO95613 3336 aa19.14■□□□□ 0.65
SMARCA4-206ENST00000538456 TM4SF1P30408 202 aa19.13■□□□□ 0.65
SMARCA4-206ENST00000538456 RASSF7Q02833 373 aa19.13■□□□□ 0.65
SMARCA4-206ENST00000538456 FSTL1Q12841 308 aa19.13■□□□□ 0.65
SMARCA4-206ENST00000538456 DLEC1Q9Y238 1755 aa19.12■□□□□ 0.65
SMARCA4-206ENST00000538456 SOS1Q07889 1333 aaPredicted RBP19.12■□□□□ 0.65
SMARCA4-206ENST00000538456 IL13P35225 146 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms