RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 GIGYF1O75420 1035 aaPredicted RBP15.45■□□□□ 0.06
CLSTN3-206ENST00000535668 CNTNAP4Q9C0A0 1308 aa15.44■□□□□ 0.06
CLSTN3-206ENST00000535668 PPM1GO15355 546 aaPredicted RBP15.44■□□□□ 0.06
CLSTN3-206ENST00000535668 ATP6V1AP38606 617 aa15.44■□□□□ 0.06
CLSTN3-206ENST00000535668 MSL1Q68DK7 614 aa15.44■□□□□ 0.06
CLSTN3-206ENST00000535668 NLGN1Q8N2Q7 840 aa15.44■□□□□ 0.06
CLSTN3-206ENST00000535668 SLC4A9Q96Q91 983 aa15.44■□□□□ 0.06
CLSTN3-206ENST00000535668 TGFB2P61812 414 aa15.43■□□□□ 0.06
CLSTN3-206ENST00000535668 PLEKHO1Q53GL0 409 aaPredicted RBP15.43■□□□□ 0.06
CLSTN3-206ENST00000535668 KLHL34Q8N239 644 aa15.42■□□□□ 0.06
CLSTN3-206ENST00000535668 PANK3Q9H999 370 aa15.42■□□□□ 0.06
CLSTN3-206ENST00000535668 COL5A3P25940 1745 aaPredicted RBP15.42■□□□□ 0.06
CLSTN3-206ENST00000535668 KDM6AO15550 1401 aaPredicted RBP15.42■□□□□ 0.06
CLSTN3-206ENST00000535668 ATP10DQ9P241 1426 aa15.42■□□□□ 0.06
CLSTN3-206ENST00000535668 GNPATO15228 680 aa15.41■□□□□ 0.06
CLSTN3-206ENST00000535668 RPS6KA4O75676 772 aa15.41■□□□□ 0.06
CLSTN3-206ENST00000535668 HSPA5P11021 654 aaKnown RBP15.4■□□□□ 0.06
CLSTN3-206ENST00000535668 TRAPPC3LQ5T215 181 aa15.4■□□□□ 0.06
CLSTN3-206ENST00000535668 RTCBQ9Y3I0 505 aaKnown RBP15.4■□□□□ 0.06
CLSTN3-206ENST00000535668 C10orf71Q711Q0 1435 aa15.4■□□□□ 0.06
CLSTN3-206ENST00000535668 KIAA1551Q9HCM1 1747 aa15.4■□□□□ 0.06
CLSTN3-206ENST00000535668 PXDNLA1KZ92 1463 aa15.39■□□□□ 0.05
CLSTN3-206ENST00000535668 MYH14Q7Z406 1995 aaKnown RBP15.38■□□□□ 0.05
CLSTN3-206ENST00000535668 SENP3-EIF4A1A0A087X0R7 540 aa15.38■□□□□ 0.05
CLSTN3-206ENST00000535668 IL13P35225 146 aa15.38■□□□□ 0.05
CLSTN3-206ENST00000535668 AMER1Q5JTC6 1135 aaPredicted RBP15.38■□□□□ 0.05
CLSTN3-206ENST00000535668 PELP1Q8IZL8 1130 aaKnown RBP15.38■□□□□ 0.05
CLSTN3-206ENST00000535668 ARHGEF1Q92888 912 aaKnown RBP15.38■□□□□ 0.05
CLSTN3-206ENST00000535668 PHF14O94880 888 aa15.37■□□□□ 0.05
CLSTN3-206ENST00000535668 MMP10P09238 476 aa15.37■□□□□ 0.05
CLSTN3-206ENST00000535668 GYS1P13807 737 aa15.37■□□□□ 0.05
CLSTN3-206ENST00000535668 ADAMTS7Q9UKP4 1686 aa15.35■□□□□ 0.05
CLSTN3-206ENST00000535668 MRC1P22897 1456 aa15.35■□□□□ 0.05
CLSTN3-206ENST00000535668 PER1O15534 1290 aaPredicted RBP15.35■□□□□ 0.05
CLSTN3-206ENST00000535668 MTHFSP49914 203 aa15.35■□□□□ 0.05
CLSTN3-206ENST00000535668 ZNF530Q6P9A1 599 aaPredicted RBP15.35■□□□□ 0.05
CLSTN3-206ENST00000535668 SMIM5Q71RC9 77 aa15.35■□□□□ 0.05
CLSTN3-206ENST00000535668 MORC1Q86VD1 984 aa15.35■□□□□ 0.05
CLSTN3-206ENST00000535668 GPBP1L1Q9HC44 474 aaPredicted RBP15.35■□□□□ 0.05
CLSTN3-206ENST00000535668 NPC1L1Q9UHC9 1359 aa15.35■□□□□ 0.05
CLSTN3-206ENST00000535668 BRCA1P38398 1863 aaKnown RBP15.34■□□□□ 0.05
CLSTN3-206ENST00000535668 CABP4P57796 275 aa15.34■□□□□ 0.05
CLSTN3-206ENST00000535668 KNSTRNQ9Y448 316 aa15.34■□□□□ 0.05
CLSTN3-206ENST00000535668 C4AP0C0L4 1744 aa15.34■□□□□ 0.05
CLSTN3-206ENST00000535668 KCNA3P22001 575 aa15.33■□□□□ 0.04
CLSTN3-206ENST00000535668 TNNT2P45379 298 aaPredicted RBP15.33■□□□□ 0.04
CLSTN3-206ENST00000535668 AKAP4Q5JQC9 854 aa15.33■□□□□ 0.04
CLSTN3-206ENST00000535668 AEBP1Q8IUX7 1158 aa15.33■□□□□ 0.04
CLSTN3-206ENST00000535668 NFATC2IPQ8NCF5 419 aa15.33■□□□□ 0.04
CLSTN3-206ENST00000535668 SCN11AQ9UI33 1791 aa15.33■□□□□ 0.04
CLSTN3-206ENST00000535668 KIF3CO14782 793 aa15.32■□□□□ 0.04
CLSTN3-206ENST00000535668 RFC4P35249 363 aa15.32■□□□□ 0.04
CLSTN3-206ENST00000535668 C1orf141Q5JVX7 400 aa15.32■□□□□ 0.04
CLSTN3-206ENST00000535668 VSIG10Q8N0Z9 540 aa15.32■□□□□ 0.04
CLSTN3-206ENST00000535668 CCDC87Q9NVE4 849 aa15.32■□□□□ 0.04
CLSTN3-206ENST00000535668 USP42Q9H9J4 1324 aaKnown RBP15.32■□□□□ 0.04
CLSTN3-206ENST00000535668 HSPA6P17066 643 aa15.31■□□□□ 0.04
CLSTN3-206ENST00000535668 TM4SF1P30408 202 aa15.31■□□□□ 0.04
CLSTN3-206ENST00000535668 CRKLP46109 303 aaKnown RBP15.31■□□□□ 0.04
CLSTN3-206ENST00000535668 SULT6B1Q6IMI4 303 aa15.31■□□□□ 0.04
CLSTN3-206ENST00000535668 SLC52A2Q9HAB3 445 aa15.31■□□□□ 0.04
CLSTN3-206ENST00000535668 TJP1Q07157 1748 aa15.3■□□□□ 0.04
CLSTN3-206ENST00000535668 INTS5Q6P9B9 1019 aaKnown RBP15.3■□□□□ 0.04
CLSTN3-206ENST00000535668 RBM42Q9BTD8 480 aaKnown RBP15.3■□□□□ 0.04
CLSTN3-206ENST00000535668 ARFGEF1Q9Y6D6 1849 aa15.3■□□□□ 0.04
CLSTN3-206ENST00000535668 PARP3Q9Y6F1 533 aa15.29■□□□□ 0.04
CLSTN3-206ENST00000535668 PCGF6Q9BYE7 350 aa15.28■□□□□ 0.04
CLSTN3-206ENST00000535668 SOS1Q07889 1333 aaPredicted RBP15.27■□□□□ 0.04
CLSTN3-206ENST00000535668 KIF7Q2M1P5 1343 aa15.27■□□□□ 0.04
CLSTN3-206ENST00000535668 A0A0G2JLW4 131 aa15.27■□□□□ 0.04
CLSTN3-206ENST00000535668 DPEP1P16444 411 aa15.27■□□□□ 0.04
CLSTN3-206ENST00000535668 ZC3H4Q9UPT8 1303 aaKnown RBP15.26■□□□□ 0.03
CLSTN3-206ENST00000535668 PTCD1O75127 700 aaKnown RBP15.26■□□□□ 0.03
CLSTN3-206ENST00000535668 TOMM70O94826 608 aa15.26■□□□□ 0.03
CLSTN3-206ENST00000535668 CYP19A1P11511 503 aaPredicted RBP15.26■□□□□ 0.03
CLSTN3-206ENST00000535668 DDR1Q08345 913 aa15.26■□□□□ 0.03
CLSTN3-206ENST00000535668 PIM2Q9P1W9 311 aa15.26■□□□□ 0.03
CLSTN3-206ENST00000535668 KCPQ6ZWJ8 1503 aa15.26■□□□□ 0.03
CLSTN3-206ENST00000535668 N4BP2Q86UW6 1770 aaPredicted RBP15.26■□□□□ 0.03
CLSTN3-206ENST00000535668 NRXN2Q9P2S2 1712 aa15.26■□□□□ 0.03
CLSTN3-206ENST00000535668 POLRMTO00411 1230 aaKnown RBP15.25■□□□□ 0.03
CLSTN3-206ENST00000535668 RNMTO43148 476 aaKnown RBP15.25■□□□□ 0.03
CLSTN3-206ENST00000535668 FKBP8Q14318 412 aa15.25■□□□□ 0.03
CLSTN3-206ENST00000535668 NARFQ9UHQ1 456 aa15.25■□□□□ 0.03
CLSTN3-206ENST00000535668 POLR3GLQ9BT43 218 aa15.24■□□□□ 0.03
CLSTN3-206ENST00000535668 LGR6Q9HBX8 967 aa15.24■□□□□ 0.03
CLSTN3-206ENST00000535668 BCS1LQ9Y276 419 aa15.24■□□□□ 0.03
CLSTN3-206ENST00000535668 UBR2Q8IWV8 1755 aa15.24■□□□□ 0.03
CLSTN3-206ENST00000535668 COL3A1P02461 1466 aaPredicted RBP15.23■□□□□ 0.03
CLSTN3-206ENST00000535668 DIAPH1O60610 1272 aaKnown RBP15.22■□□□□ 0.03
CLSTN3-206ENST00000535668 MTHFSDQ2M296 383 aaKnown RBP15.22■□□□□ 0.03
CLSTN3-206ENST00000535668 DALRD3Q5D0E6 543 aaKnown RBP15.22■□□□□ 0.03
CLSTN3-206ENST00000535668 DNAJC10Q8IXB1 793 aa15.22■□□□□ 0.03
CLSTN3-206ENST00000535668 FCHSD2O94868 740 aa15.21■□□□□ 0.03
CLSTN3-206ENST00000535668 APLP1P51693 650 aa15.21■□□□□ 0.03
CLSTN3-206ENST00000535668 IFFO2Q5TF58 517 aa15.21■□□□□ 0.03
CLSTN3-206ENST00000535668 DNAJC5GQ8N7S2 189 aa15.21■□□□□ 0.03
CLSTN3-206ENST00000535668 RBM46Q8TBY0 533 aaKnown RBP15.21■□□□□ 0.03
CLSTN3-206ENST00000535668 SRP68Q9UHB9 627 aaKnown RBP15.21■□□□□ 0.03
CLSTN3-206ENST00000535668 CEMIPQ8WUJ3 1361 aa15.21■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 423.3 ms