RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 KIF13AQ9H1H9 1805 aa23.86■■□□□ 1.41
PCF11-203ENST00000530304 ESPNB1AK53 854 aa23.86■■□□□ 1.41
PCF11-203ENST00000530304 TRIM44Q96DX7 344 aaPredicted RBP23.86■■□□□ 1.41
PCF11-203ENST00000530304 LRRCC1Q9C099 1032 aa23.86■■□□□ 1.41
PCF11-203ENST00000530304 SALL3Q9BXA9 1300 aa23.86■■□□□ 1.41
PCF11-203ENST00000530304 GNAI3P08754 354 aa23.85■■□□□ 1.41
PCF11-203ENST00000530304 CEBPAP49715 358 aaPredicted RBP23.85■■□□□ 1.41
PCF11-203ENST00000530304 NECTIN2Q92692 538 aa23.85■■□□□ 1.41
PCF11-203ENST00000530304 LMBRD1Q9NUN5 540 aa23.85■■□□□ 1.41
PCF11-203ENST00000530304 PNMA6EA0A0J9YXQ4 647 aa23.84■■□□□ 1.41
PCF11-203ENST00000530304 GNAT3A8MTJ3 354 aa23.84■■□□□ 1.41
PCF11-203ENST00000530304 RGPD8O14715 1765 aaPredicted RBP23.84■■□□□ 1.41
PCF11-203ENST00000530304 ERBB4Q15303 1308 aa23.84■■□□□ 1.41
PCF11-203ENST00000530304 ATP8B2P98198 1209 aa23.83■■□□□ 1.41
PCF11-203ENST00000530304 MX1P20591 662 aa23.82■■□□□ 1.4
PCF11-203ENST00000530304 NLRP6P59044 892 aa23.82■■□□□ 1.4
PCF11-203ENST00000530304 PIK3C2AO00443 1686 aa23.82■■□□□ 1.4
PCF11-203ENST00000530304 NASPP49321 788 aaPredicted RBP23.82■■□□□ 1.4
PCF11-203ENST00000530304 ZDHHC9Q9Y397 364 aa23.82■■□□□ 1.4
PCF11-203ENST00000530304 ESYT1Q9BSJ8 1104 aa23.81■■□□□ 1.4
PCF11-203ENST00000530304 TBX22Q9Y458 520 aa23.81■■□□□ 1.4
PCF11-203ENST00000530304 NCLP19338 710 aaKnown RBP23.81■■□□□ 1.4
PCF11-203ENST00000530304 NEK4P51957 841 aa23.81■■□□□ 1.4
PCF11-203ENST00000530304 DIP2AQ14689 1571 aa23.81■■□□□ 1.4
PCF11-203ENST00000530304 CAVIN1Q6NZI2 390 aaKnown RBP23.8■■□□□ 1.4
PCF11-203ENST00000530304 LRRC37A3O60309 1634 aa23.8■■□□□ 1.4
PCF11-203ENST00000530304 XRN1Q8IZH2 1706 aaKnown RBP23.8■■□□□ 1.4
PCF11-203ENST00000530304 ZNF445P59923 1031 aa23.8■■□□□ 1.4
PCF11-203ENST00000530304 IL17REQ8NFR9 667 aa23.8■■□□□ 1.4
PCF11-203ENST00000530304 FAM208AQ9UK61 1670 aaKnown RBP23.8■■□□□ 1.4
PCF11-203ENST00000530304 HOXC9P31274 260 aa23.8■■□□□ 1.4
PCF11-203ENST00000530304 CCDC173Q0VFZ6 552 aa23.79■■□□□ 1.4
PCF11-203ENST00000530304 LRRFIP2Q9Y608 721 aaKnown RBP23.79■■□□□ 1.4
PCF11-203ENST00000530304 TUBGCP6Q96RT7 1819 aa23.78■■□□□ 1.4
PCF11-203ENST00000530304 PRPF40AO75400 957 aaKnown RBP23.78■■□□□ 1.4
PCF11-203ENST00000530304 ZSCAN23Q3MJ62 389 aa23.78■■□□□ 1.4
PCF11-203ENST00000530304 NUTM2GQ5VZR2 741 aa23.78■■□□□ 1.4
PCF11-203ENST00000530304 RILPL2Q969X0 211 aa23.78■■□□□ 1.4
PCF11-203ENST00000530304 TRIM6-TRIM34B2RNG4 842 aa23.78■■□□□ 1.4
PCF11-203ENST00000530304 TMX3Q96JJ7 454 aa23.78■■□□□ 1.4
PCF11-203ENST00000530304 CHMLP26374 656 aa23.77■■□□□ 1.4
PCF11-203ENST00000530304 NAP1L5Q96NT1 182 aaPredicted RBP23.77■■□□□ 1.4
PCF11-203ENST00000530304 PPP1R9BQ96SB3 815 aa23.77■■□□□ 1.4
PCF11-203ENST00000530304 TAF7Q15545 349 aaPredicted RBP23.77■■□□□ 1.4
PCF11-203ENST00000530304 MAP3K5Q99683 1374 aa23.76■■□□□ 1.39
PCF11-203ENST00000530304 SOS1Q07889 1333 aaPredicted RBP23.76■■□□□ 1.39
PCF11-203ENST00000530304 USP44Q9H0E7 712 aa23.76■■□□□ 1.39
PCF11-203ENST00000530304 STAP2Q9UGK3 403 aa23.76■■□□□ 1.39
PCF11-203ENST00000530304 PALD1Q9ULE6 856 aa23.76■■□□□ 1.39
PCF11-203ENST00000530304 MCCP23508 829 aa23.75■■□□□ 1.39
PCF11-203ENST00000530304 MCM2P49736 904 aa23.75■■□□□ 1.39
PCF11-203ENST00000530304 SRCIN1Q9C0H9 1055 aa23.75■■□□□ 1.39
PCF11-203ENST00000530304 CACNA1FO60840 1977 aa23.75■■□□□ 1.39
PCF11-203ENST00000530304 NWD1Q149M9 1564 aa23.75■■□□□ 1.39
PCF11-203ENST00000530304 SLIT1O75093 1534 aa23.75■■□□□ 1.39
PCF11-203ENST00000530304 GPT2Q8TD30 523 aa23.75■■□□□ 1.39
PCF11-203ENST00000530304 ANP32BQ92688 251 aaKnown RBP23.75■■□□□ 1.39
PCF11-203ENST00000530304 LTV1Q96GA3 475 aaPredicted RBP23.75■■□□□ 1.39
PCF11-203ENST00000530304 ANO2Q9NQ90 1003 aa23.75■■□□□ 1.39
PCF11-203ENST00000530304 BABAM1Q9NWV8 329 aa23.74■■□□□ 1.39
PCF11-203ENST00000530304 ARHGAP23Q9P227 1491 aa23.74■■□□□ 1.39
PCF11-203ENST00000530304 UNC5CLQ8IV45 518 aa23.73■■□□□ 1.39
PCF11-203ENST00000530304 CHAMP1Q96JM3 812 aa23.73■■□□□ 1.39
PCF11-203ENST00000530304 UBTFL1P0CB47 393 aaPredicted RBP23.73■■□□□ 1.39
PCF11-203ENST00000530304 ANAPC15P60006 121 aa23.73■■□□□ 1.39
PCF11-203ENST00000530304 PLPPR3Q6T4P5 718 aa23.73■■□□□ 1.39
PCF11-203ENST00000530304 ABTB2Q8N961 1025 aa23.72■■□□□ 1.39
PCF11-203ENST00000530304 PXDNLA1KZ92 1463 aa23.71■■□□□ 1.39
PCF11-203ENST00000530304 FOXD4L5Q5VV16 416 aaPredicted RBP23.71■■□□□ 1.39
PCF11-203ENST00000530304 FOXD4L4Q8WXT5 416 aaPredicted RBP23.71■■□□□ 1.39
PCF11-203ENST00000530304 PHAXQ9H814 394 aaKnown RBP23.71■■□□□ 1.39
PCF11-203ENST00000530304 CUL4AQ13619 759 aa23.71■■□□□ 1.39
PCF11-203ENST00000530304 HDGFL1Q5TGJ6 251 aa23.71■■□□□ 1.39
PCF11-203ENST00000530304 IL1RAPL2Q9NP60 686 aa23.7■■□□□ 1.38
PCF11-203ENST00000530304 RBM27Q9P2N5 1060 aaKnown RBP23.7■■□□□ 1.38
PCF11-203ENST00000530304 MARF1Q9Y4F3 1742 aaKnown RBP23.7■■□□□ 1.38
PCF11-203ENST00000530304 SSH3Q8TE77 659 aa23.7■■□□□ 1.38
PCF11-203ENST00000530304 N4BP2Q86UW6 1770 aaPredicted RBP23.7■■□□□ 1.38
PCF11-203ENST00000530304 ANKARQ7Z5J8 1434 aa23.69■■□□□ 1.38
PCF11-203ENST00000530304 PRIM1P49642 420 aaKnown RBP23.69■■□□□ 1.38
PCF11-203ENST00000530304 USHBP1Q8N6Y0 703 aa23.69■■□□□ 1.38
PCF11-203ENST00000530304 RBSNQ9H1K0 784 aa23.69■■□□□ 1.38
PCF11-203ENST00000530304 AOX1Q06278 1338 aa23.69■■□□□ 1.38
PCF11-203ENST00000530304 BRD1O95696 1058 aa23.67■■□□□ 1.38
PCF11-203ENST00000530304 NOL8Q76FK4 1167 aaKnown RBP23.67■■□□□ 1.38
PCF11-203ENST00000530304 NUTM1Q86Y26 1132 aa23.67■■□□□ 1.38
PCF11-203ENST00000530304 INTS4Q96HW7 963 aaKnown RBP23.67■■□□□ 1.38
PCF11-203ENST00000530304 PPP1R42Q7Z4L9 355 aa23.67■■□□□ 1.38
PCF11-203ENST00000530304 THEMISQ8N1K5 641 aaPredicted RBP23.67■■□□□ 1.38
PCF11-203ENST00000530304 IL17RAQ96F46 866 aa23.67■■□□□ 1.38
PCF11-203ENST00000530304 KCNA6P17658 529 aa23.66■■□□□ 1.38
PCF11-203ENST00000530304 IL25Q9H293 177 aa23.66■■□□□ 1.38
PCF11-203ENST00000530304 NSFL1CQ9UNZ2 370 aaKnown RBP23.66■■□□□ 1.38
PCF11-203ENST00000530304 RAB11FIP3O75154 756 aa23.66■■□□□ 1.38
PCF11-203ENST00000530304 SURF6O75683 361 aaKnown RBP23.66■■□□□ 1.38
PCF11-203ENST00000530304 TMEM63CQ9P1W3 806 aa23.66■■□□□ 1.38
PCF11-203ENST00000530304 UPF3BQ9BZI7 483 aaKnown RBP23.65■■□□□ 1.38
PCF11-203ENST00000530304 EIF2S2P20042 333 aaKnown RBP23.64■■□□□ 1.38
PCF11-203ENST00000530304 POLA2Q14181 598 aa23.64■■□□□ 1.38
PCF11-203ENST00000530304 C14orf37Q86TY3 774 aa23.64■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms