RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 AMOTQ4VCS5 1084 aa17.7■□□□□ 0.42
CPSF1-204ENST00000529288 DCAF5Q96JK2 942 aa17.7■□□□□ 0.42
CPSF1-204ENST00000529288 C5P01031 1676 aa17.7■□□□□ 0.42
CPSF1-204ENST00000529288 ERVV-2B6SEH9 535 aa17.69■□□□□ 0.42
CPSF1-204ENST00000529288 WWC3Q9ULE0 1092 aa17.69■□□□□ 0.42
CPSF1-204ENST00000529288 YBX3P16989 372 aaKnown RBP eCLIP17.68■□□□□ 0.42
CPSF1-204ENST00000529288 SSFA2P28290 1259 aa17.68■□□□□ 0.42
CPSF1-204ENST00000529288 CC2D1BQ5T0F9 858 aaKnown RBP17.68■□□□□ 0.42
CPSF1-204ENST00000529288 ITGB4P16144 1822 aa17.68■□□□□ 0.42
CPSF1-204ENST00000529288 C4BP0C0L5 1744 aa17.67■□□□□ 0.42
CPSF1-204ENST00000529288 IL13P35225 146 aa17.67■□□□□ 0.42
CPSF1-204ENST00000529288 AMER1Q5JTC6 1135 aaPredicted RBP17.67■□□□□ 0.42
CPSF1-204ENST00000529288 CD2APQ9Y5K6 639 aa17.67■□□□□ 0.42
CPSF1-204ENST00000529288 GRIN3BO60391 1043 aa17.66■□□□□ 0.42
CPSF1-204ENST00000529288 PTCD1O75127 700 aaKnown RBP17.65■□□□□ 0.42
CPSF1-204ENST00000529288 TRAPPC3LQ5T215 181 aa17.65■□□□□ 0.42
CPSF1-204ENST00000529288 RTCBQ9Y3I0 505 aaKnown RBP17.65■□□□□ 0.42
CPSF1-204ENST00000529288 HMOX1P09601 288 aa17.64■□□□□ 0.41
CPSF1-204ENST00000529288 NFATC2IPQ8NCF5 419 aa17.64■□□□□ 0.41
CPSF1-204ENST00000529288 SLC4A9Q96Q91 983 aa17.64■□□□□ 0.41
CPSF1-204ENST00000529288 UTRNP46939 3433 aa17.64■□□□□ 0.41
CPSF1-204ENST00000529288 KDM6AO15550 1401 aaPredicted RBP17.63■□□□□ 0.41
CPSF1-204ENST00000529288 COL24A1Q17RW2 1714 aa17.62■□□□□ 0.41
CPSF1-204ENST00000529288 TAF1LQ8IZX4 1826 aa17.62■□□□□ 0.41
CPSF1-204ENST00000529288 PLEKHG2Q9H7P9 1386 aa17.62■□□□□ 0.41
CPSF1-204ENST00000529288 MMP10P09238 476 aa17.61■□□□□ 0.41
CPSF1-204ENST00000529288 RFC4P35249 363 aa17.6■□□□□ 0.41
CPSF1-204ENST00000529288 ARHGEF1Q92888 912 aaKnown RBP17.6■□□□□ 0.41
CPSF1-204ENST00000529288 KDRP35968 1356 aa17.59■□□□□ 0.41
CPSF1-204ENST00000529288 DIAPH1O60610 1272 aaKnown RBP17.59■□□□□ 0.41
CPSF1-204ENST00000529288 AKAP4Q5JQC9 854 aa17.59■□□□□ 0.41
CPSF1-204ENST00000529288 RC3H1Q5TC82 1133 aaKnown RBP17.59■□□□□ 0.41
CPSF1-204ENST00000529288 PER1O15534 1290 aaPredicted RBP17.58■□□□□ 0.4
CPSF1-204ENST00000529288 RPS6KA4O75676 772 aa17.58■□□□□ 0.4
CPSF1-204ENST00000529288 NLGN1Q8N2Q7 840 aa17.58■□□□□ 0.4
CPSF1-204ENST00000529288 LGR6Q9HBX8 967 aa17.58■□□□□ 0.4
CPSF1-204ENST00000529288 CNTNAP4Q9C0A0 1308 aa17.57■□□□□ 0.4
CPSF1-204ENST00000529288 U2SURPO15042 1029 aaKnown RBP17.57■□□□□ 0.4
CPSF1-204ENST00000529288 GIGYF1O75420 1035 aaPredicted RBP17.57■□□□□ 0.4
CPSF1-204ENST00000529288 UBR3Q6ZT12 1888 aa17.56■□□□□ 0.4
CPSF1-204ENST00000529288 CRKLP46109 303 aaKnown RBP17.56■□□□□ 0.4
CPSF1-204ENST00000529288 SENP3-EIF4A1A0A087X0R7 540 aa17.55■□□□□ 0.4
CPSF1-204ENST00000529288 RNMTO43148 476 aaKnown RBP17.55■□□□□ 0.4
CPSF1-204ENST00000529288 ADRA2BP18089 450 aa17.55■□□□□ 0.4
CPSF1-204ENST00000529288 C1QTNF8P60827 252 aa17.55■□□□□ 0.4
CPSF1-204ENST00000529288 SLC39A6Q13433 755 aa17.55■□□□□ 0.4
CPSF1-204ENST00000529288 MTHFSDQ2M296 383 aaKnown RBP17.55■□□□□ 0.4
CPSF1-204ENST00000529288 SLC52A2Q9HAB3 445 aa17.55■□□□□ 0.4
CPSF1-204ENST00000529288 PARP3Q9Y6F1 533 aa17.55■□□□□ 0.4
CPSF1-204ENST00000529288 GYS1P13807 737 aa17.54■□□□□ 0.4
CPSF1-204ENST00000529288 ZNF526Q8TF50 670 aaPredicted RBP17.54■□□□□ 0.4
CPSF1-204ENST00000529288 SRP68Q9UHB9 627 aaKnown RBP17.54■□□□□ 0.4
CPSF1-204ENST00000529288 CHD4Q14839 1912 aa17.54■□□□□ 0.4
CPSF1-204ENST00000529288 GOLGB1Q14789 3259 aaKnown RBP17.53■□□□□ 0.4
CPSF1-204ENST00000529288 A0A0G2JLW4 131 aa17.53■□□□□ 0.4
CPSF1-204ENST00000529288 DNAJC10Q8IXB1 793 aa17.53■□□□□ 0.4
CPSF1-204ENST00000529288 CCDC87Q9NVE4 849 aa17.53■□□□□ 0.4
CPSF1-204ENST00000529288 BCS1LQ9Y276 419 aa17.51■□□□□ 0.39
CPSF1-204ENST00000529288 INTS5Q6P9B9 1019 aaKnown RBP17.5■□□□□ 0.39
CPSF1-204ENST00000529288 ATP10DQ9P241 1426 aa17.49■□□□□ 0.39
CPSF1-204ENST00000529288 DPEP1P16444 411 aa17.49■□□□□ 0.39
CPSF1-204ENST00000529288 TGFB2P61812 414 aa17.49■□□□□ 0.39
CPSF1-204ENST00000529288 FKBP8Q14318 412 aa17.49■□□□□ 0.39
CPSF1-204ENST00000529288 GPBP1L1Q9HC44 474 aaPredicted RBP17.49■□□□□ 0.39
CPSF1-204ENST00000529288 CICQ96RK0 1608 aaPredicted RBP17.48■□□□□ 0.39
CPSF1-204ENST00000529288 ZPR1O75312 459 aa17.48■□□□□ 0.39
CPSF1-204ENST00000529288 FCHSD2O94868 740 aa17.47■□□□□ 0.39
CPSF1-204ENST00000529288 USPL1Q5W0Q7 1092 aa17.47■□□□□ 0.39
CPSF1-204ENST00000529288 ARHGAP27Q6ZUM4 889 aa17.47■□□□□ 0.39
CPSF1-204ENST00000529288 TTC5Q8N0Z6 440 aa17.47■□□□□ 0.39
CPSF1-204ENST00000529288 CFAP53Q96M91 514 aa17.47■□□□□ 0.39
CPSF1-204ENST00000529288 USP42Q9H9J4 1324 aaKnown RBP17.47■□□□□ 0.39
CPSF1-204ENST00000529288 PXDNLA1KZ92 1463 aa17.46■□□□□ 0.39
CPSF1-204ENST00000529288 CYP19A1P11511 503 aaPredicted RBP17.46■□□□□ 0.39
CPSF1-204ENST00000529288 TEFQ10587 303 aa17.46■□□□□ 0.39
CPSF1-204ENST00000529288 GAS2L2Q8NHY3 880 aa17.46■□□□□ 0.39
CPSF1-204ENST00000529288 NPC1L1Q9UHC9 1359 aa17.45■□□□□ 0.38
CPSF1-204ENST00000529288 GNAT3A8MTJ3 354 aa17.45■□□□□ 0.38
CPSF1-204ENST00000529288 CANXP27824 592 aaKnown RBP17.45■□□□□ 0.38
CPSF1-204ENST00000529288 DDR1Q08345 913 aa17.44■□□□□ 0.38
CPSF1-204ENST00000529288 ZBTB1Q9Y2K1 713 aa17.44■□□□□ 0.38
CPSF1-204ENST00000529288 C10orf71Q711Q0 1435 aa17.44■□□□□ 0.38
CPSF1-204ENST00000529288 COL5A3P25940 1745 aaPredicted RBP17.44■□□□□ 0.38
CPSF1-204ENST00000529288 ZNF831Q5JPB2 1677 aa17.43■□□□□ 0.38
CPSF1-204ENST00000529288 IL17REQ8NFR9 667 aa17.43■□□□□ 0.38
CPSF1-204ENST00000529288 NUDCQ9Y266 331 aa17.43■□□□□ 0.38
CPSF1-204ENST00000529288 ZNF330Q9Y3S2 320 aaPredicted RBP17.43■□□□□ 0.38
CPSF1-204ENST00000529288 SOS1Q07889 1333 aaPredicted RBP17.43■□□□□ 0.38
CPSF1-204ENST00000529288 PRKAR2BP31323 418 aa17.42■□□□□ 0.38
CPSF1-204ENST00000529288 SCN11AQ9UI33 1791 aa17.41■□□□□ 0.38
CPSF1-204ENST00000529288 STARD3NLO95772 234 aa17.41■□□□□ 0.38
CPSF1-204ENST00000529288 U2AF1L5P0DN76 240 aaPredicted RBP17.41■□□□□ 0.38
CPSF1-204ENST00000529288 CHRNA5P30532 468 aa17.41■□□□□ 0.38
CPSF1-204ENST00000529288 U2AF1Q01081 240 aaKnown RBP eCLIP17.41■□□□□ 0.38
CPSF1-204ENST00000529288 PHACTR3Q96KR7 559 aa17.41■□□□□ 0.38
CPSF1-204ENST00000529288 PIM2Q9P1W9 311 aa17.41■□□□□ 0.38
CPSF1-204ENST00000529288 COL3A1P02461 1466 aaPredicted RBP17.41■□□□□ 0.38
CPSF1-204ENST00000529288 C4AP0C0L4 1744 aa17.41■□□□□ 0.38
CPSF1-204ENST00000529288 TJP1Q07157 1748 aa17.41■□□□□ 0.38
CPSF1-204ENST00000529288 MYH14Q7Z406 1995 aaKnown RBP17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms