RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 KIF16BQ96L93 1317 aa26.95■■□□□ 1.91
VPS28-208ENST00000527797 NKX1-1Q15270 411 aaPredicted RBP26.95■■□□□ 1.91
VPS28-208ENST00000527797 CRBNQ96SW2 442 aa26.95■■□□□ 1.91
VPS28-208ENST00000527797 SPATA31A5Q5VU36 1347 aa26.95■■□□□ 1.9
VPS28-208ENST00000527797 SPATA31A7Q8IWB4 1347 aa26.95■■□□□ 1.9
VPS28-208ENST00000527797 MRPL50Q8N5N7 158 aaKnown RBP26.94■■□□□ 1.9
VPS28-208ENST00000527797 CCDC9Q9Y3X0 531 aaKnown RBP26.94■■□□□ 1.9
VPS28-208ENST00000527797 LRP6O75581 1613 aa26.94■■□□□ 1.9
VPS28-208ENST00000527797 IPO8O15397 1037 aaKnown RBP26.94■■□□□ 1.9
VPS28-208ENST00000527797 FNBP4Q8N3X1 1017 aaPredicted RBP26.94■■□□□ 1.9
VPS28-208ENST00000527797 MS4A1P11836 297 aa26.93■■□□□ 1.9
VPS28-208ENST00000527797 EIF4A1P60842 406 aaKnown RBP26.93■■□□□ 1.9
VPS28-208ENST00000527797 NOB1Q9ULX3 412 aaKnown RBP26.93■■□□□ 1.9
VPS28-208ENST00000527797 EXOC5O00471 708 aa26.92■■□□□ 1.9
VPS28-208ENST00000527797 MEX3CQ5U5Q3 659 aaKnown RBP26.92■■□□□ 1.9
VPS28-208ENST00000527797 CABP4P57796 275 aa26.91■■□□□ 1.9
VPS28-208ENST00000527797 NFATC2IPQ8NCF5 419 aa26.91■■□□□ 1.9
VPS28-208ENST00000527797 SCN11AQ9UI33 1791 aa26.91■■□□□ 1.9
VPS28-208ENST00000527797 TCERG1O14776 1098 aaKnown RBP26.9■■□□□ 1.9
VPS28-208ENST00000527797 BCL9LQ86UU0 1499 aa26.9■■□□□ 1.9
VPS28-208ENST00000527797 KCNQ3O43525 872 aa26.9■■□□□ 1.9
VPS28-208ENST00000527797 MRC1P22897 1456 aa26.89■■□□□ 1.9
VPS28-208ENST00000527797 ERVV-2B6SEH9 535 aa26.89■■□□□ 1.9
VPS28-208ENST00000527797 VPS72Q15906 364 aa26.89■■□□□ 1.9
VPS28-208ENST00000527797 ATF7IPQ6VMQ6 1270 aa26.89■■□□□ 1.9
VPS28-208ENST00000527797 BARGINQ6ZT62 677 aa26.89■■□□□ 1.9
VPS28-208ENST00000527797 PANK1Q8TE04 598 aa26.88■■□□□ 1.89
VPS28-208ENST00000527797 KDM3BQ7LBC6 1761 aa26.88■■□□□ 1.89
VPS28-208ENST00000527797 HOXB7P09629 217 aa26.87■■□□□ 1.89
VPS28-208ENST00000527797 DZIP1LQ8IYY4 767 aaKnown RBP26.87■■□□□ 1.89
VPS28-208ENST00000527797 ARHGAP45Q92619 1136 aa26.87■■□□□ 1.89
VPS28-208ENST00000527797 USP21Q9UK80 565 aa26.87■■□□□ 1.89
VPS28-208ENST00000527797 VIRMAQ69YN4 1812 aaKnown RBP26.87■■□□□ 1.89
VPS28-208ENST00000527797 CHMP4AQ9BY43 222 aa26.87■■□□□ 1.89
VPS28-208ENST00000527797 TRIM27P14373 513 aa26.86■■□□□ 1.89
VPS28-208ENST00000527797 CCDC30Q5VVM6 783 aa26.86■■□□□ 1.89
VPS28-208ENST00000527797 ZNF790Q6PG37 636 aa26.86■■□□□ 1.89
VPS28-208ENST00000527797 FTSJ3Q8IY81 847 aaKnown RBP26.86■■□□□ 1.89
VPS28-208ENST00000527797 CLUAP1Q96AJ1 413 aa26.86■■□□□ 1.89
VPS28-208ENST00000527797 SHANK3Q9BYB0 1731 aa26.86■■□□□ 1.89
VPS28-208ENST00000527797 SIPA1L3O60292 1781 aaPredicted RBP26.86■■□□□ 1.89
VPS28-208ENST00000527797 TNNQ9UQP3 1299 aa26.85■■□□□ 1.89
VPS28-208ENST00000527797 STK31Q9BXU1 1019 aa26.84■■□□□ 1.89
VPS28-208ENST00000527797 RLBP1P12271 317 aa26.83■■□□□ 1.89
VPS28-208ENST00000527797 DDB1Q16531 1140 aa26.83■■□□□ 1.89
VPS28-208ENST00000527797 COG6Q9Y2V7 657 aa26.83■■□□□ 1.89
VPS28-208ENST00000527797 TNS2Q63HR2 1409 aa26.83■■□□□ 1.89
VPS28-208ENST00000527797 SLC4A2P04920 1241 aa26.83■■□□□ 1.88
VPS28-208ENST00000527797 SLC39A6Q13433 755 aa26.83■■□□□ 1.88
VPS28-208ENST00000527797 TTC5Q8N0Z6 440 aa26.83■■□□□ 1.88
VPS28-208ENST00000527797 WNK3Q9BYP7 1800 aa26.82■■□□□ 1.88
VPS28-208ENST00000527797 HEG1Q9ULI3 1381 aa26.82■■□□□ 1.88
VPS28-208ENST00000527797 HDGFL1Q5TGJ6 251 aa26.81■■□□□ 1.88
VPS28-208ENST00000527797 CCDC136Q96JN2 1154 aa26.81■■□□□ 1.88
VPS28-208ENST00000527797 API5Q9BZZ5 524 aaKnown RBP26.81■■□□□ 1.88
VPS28-208ENST00000527797 GIGYF1O75420 1035 aaPredicted RBP26.8■■□□□ 1.88
VPS28-208ENST00000527797 B4GALNT3Q6L9W6 998 aa26.8■■□□□ 1.88
VPS28-208ENST00000527797 AFF2P51816 1311 aa26.79■■□□□ 1.88
VPS28-208ENST00000527797 NECTIN2Q92692 538 aa26.79■■□□□ 1.88
VPS28-208ENST00000527797 PTPRCP08575 1304 aa26.78■■□□□ 1.88
VPS28-208ENST00000527797 EIF2S2P20042 333 aaKnown RBP26.78■■□□□ 1.88
VPS28-208ENST00000527797 MVPQ14764 893 aaKnown RBP26.78■■□□□ 1.88
VPS28-208ENST00000527797 FAM98CQ17RN3 349 aaKnown RBP26.77■■□□□ 1.88
VPS28-208ENST00000527797 TMOD3Q9NYL9 352 aa26.77■■□□□ 1.88
VPS28-208ENST00000527797 FMNL2Q96PY5 1086 aa26.76■■□□□ 1.87
VPS28-208ENST00000527797 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.76■■□□□ 1.87
VPS28-208ENST00000527797 AAMPQ13685 434 aa26.75■■□□□ 1.87
VPS28-208ENST00000527797 ZNF496Q96IT1 587 aaPredicted RBP26.75■■□□□ 1.87
VPS28-208ENST00000527797 TMEM57Q8N5G2 664 aa26.74■■□□□ 1.87
VPS28-208ENST00000527797 ITPRIPQ8IWB1 547 aa26.73■■□□□ 1.87
VPS28-208ENST00000527797 ABCC4O15439 1325 aa26.73■■□□□ 1.87
VPS28-208ENST00000527797 SNRPA1P09661 255 aaKnown RBP26.72■■□□□ 1.87
VPS28-208ENST00000527797 G2E3Q7L622 706 aa26.72■■□□□ 1.87
VPS28-208ENST00000527797 DDX19BQ9UMR2 479 aa26.72■■□□□ 1.87
VPS28-208ENST00000527797 MARCH10Q8NA82 808 aaPredicted RBP26.72■■□□□ 1.87
VPS28-208ENST00000527797 GJD4Q96KN9 370 aaPredicted RBP26.72■■□□□ 1.87
VPS28-208ENST00000527797 TRPC5Q9UL62 973 aaPredicted RBP26.72■■□□□ 1.87
VPS28-208ENST00000527797 PRAMEF22A3QJZ6 481 aa26.71■■□□□ 1.87
VPS28-208ENST00000527797 FLIIQ13045 1269 aa26.7■■□□□ 1.86
VPS28-208ENST00000527797 PIGBQ92521 554 aa26.7■■□□□ 1.86
VPS28-208ENST00000527797 CHPF2Q9P2E5 772 aa26.7■■□□□ 1.86
VPS28-208ENST00000527797 DBF4Q9UBU7 674 aaPredicted RBP26.7■■□□□ 1.86
VPS28-208ENST00000527797 TOGARAM1Q9Y4F4 1720 aa26.69■■□□□ 1.86
VPS28-208ENST00000527797 A0A0G2JS52 829 aa26.68■■□□□ 1.86
VPS28-208ENST00000527797 MYT1Q01538 1121 aa26.68■■□□□ 1.86
VPS28-208ENST00000527797 ATRNO75882 1429 aa26.68■■□□□ 1.86
VPS28-208ENST00000527797 CHMP4BQ9H444 224 aaKnown RBP26.67■■□□□ 1.86
VPS28-208ENST00000527797 RGS12O14924 1447 aa26.66■■□□□ 1.86
VPS28-208ENST00000527797 FKBP5Q13451 457 aaPredicted RBP26.66■■□□□ 1.86
VPS28-208ENST00000527797 SYTL4Q96C24 671 aaPredicted RBP26.66■■□□□ 1.86
VPS28-208ENST00000527797 BCL9O00512 1426 aa26.66■■□□□ 1.86
VPS28-208ENST00000527797 PRIM1P49642 420 aaKnown RBP26.65■■□□□ 1.86
VPS28-208ENST00000527797 INTS3Q68E01 1043 aaKnown RBP26.65■■□□□ 1.86
VPS28-208ENST00000527797 PHAXQ9H814 394 aaKnown RBP26.65■■□□□ 1.86
VPS28-208ENST00000527797 QTRT2Q9H974 415 aaKnown RBP26.64■■□□□ 1.85
VPS28-208ENST00000527797 ATG3Q9NT62 314 aa26.64■■□□□ 1.85
VPS28-208ENST00000527797 USP16Q9Y5T5 823 aa26.64■■□□□ 1.85
VPS28-208ENST00000527797 PAPPAQ13219 1627 aa26.63■■□□□ 1.85
VPS28-208ENST00000527797 PTCD1O75127 700 aaKnown RBP26.63■■□□□ 1.85
VPS28-208ENST00000527797 DDX21Q9NR30 783 aaKnown RBP eCLIP26.63■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms