RNA–Protein interactions for RNA: ENST00000505589.1

NEDD9-210, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-210ENST00000505589 RGPD2P0DJD1 1756 aa13.71□□□□□ -0.22
NEDD9-210ENST00000505589 TAF1LQ8IZX4 1826 aa13.7□□□□□ -0.22
NEDD9-210ENST00000505589 FCHSD2O94868 740 aa13.7□□□□□ -0.22
NEDD9-210ENST00000505589 RBM46Q8TBY0 533 aaKnown RBP13.7□□□□□ -0.22
NEDD9-210ENST00000505589 ASAP1Q9ULH1 1129 aa13.7□□□□□ -0.22
NEDD9-210ENST00000505589 PHKG2P15735 406 aa13.69□□□□□ -0.22
NEDD9-210ENST00000505589 FSTL1Q12841 308 aa13.69□□□□□ -0.22
NEDD9-210ENST00000505589 PIM2Q9P1W9 311 aa13.69□□□□□ -0.22
NEDD9-210ENST00000505589 WWC3Q9ULE0 1092 aa13.69□□□□□ -0.22
NEDD9-210ENST00000505589 KDM2BQ8NHM5 1336 aa13.68□□□□□ -0.22
NEDD9-210ENST00000505589 A0A0G2JLW4 131 aa13.68□□□□□ -0.22
NEDD9-210ENST00000505589 DNAJC5GQ8N7S2 189 aa13.68□□□□□ -0.22
NEDD9-210ENST00000505589 DCAF5Q96JK2 942 aa13.68□□□□□ -0.22
NEDD9-210ENST00000505589 EYA1Q99502 592 aa13.68□□□□□ -0.22
NEDD9-210ENST00000505589 ATG3Q9NT62 314 aa13.68□□□□□ -0.22
NEDD9-210ENST00000505589 EMILIN1Q9Y6C2 1016 aa13.68□□□□□ -0.22
NEDD9-210ENST00000505589 RPS6KA4O75676 772 aa13.67□□□□□ -0.22
NEDD9-210ENST00000505589 ITPK1Q13572 414 aa13.67□□□□□ -0.22
NEDD9-210ENST00000505589 AMOTQ4VCS5 1084 aa13.67□□□□□ -0.22
NEDD9-210ENST00000505589 PLEKHO1Q53GL0 409 aaPredicted RBP13.67□□□□□ -0.22
NEDD9-210ENST00000505589 ARHGEF1Q92888 912 aaKnown RBP13.67□□□□□ -0.22
NEDD9-210ENST00000505589 RBM42Q9BTD8 480 aaKnown RBP13.67□□□□□ -0.22
NEDD9-210ENST00000505589 AMIGO3Q86WK7 504 aa13.66□□□□□ -0.22
NEDD9-210ENST00000505589 UBR3Q6ZT12 1888 aa13.65□□□□□ -0.22
NEDD9-210ENST00000505589 ITGB4P16144 1822 aa13.65□□□□□ -0.22
NEDD9-210ENST00000505589 CABP4P57796 275 aa13.65□□□□□ -0.22
NEDD9-210ENST00000505589 DALRD3Q5D0E6 543 aaKnown RBP13.65□□□□□ -0.22
NEDD9-210ENST00000505589 CNTNAP4Q9C0A0 1308 aa13.64□□□□□ -0.23
NEDD9-210ENST00000505589 GYS1P13807 737 aa13.64□□□□□ -0.23
NEDD9-210ENST00000505589 DPEP1P16444 411 aa13.64□□□□□ -0.23
NEDD9-210ENST00000505589 C9orf131Q5VYM1 1079 aa13.64□□□□□ -0.23
NEDD9-210ENST00000505589 SMIM5Q71RC9 77 aa13.64□□□□□ -0.23
NEDD9-210ENST00000505589 KLRG1Q96E93 195 aa13.64□□□□□ -0.23
NEDD9-210ENST00000505589 NCAPD2Q15021 1401 aa13.64□□□□□ -0.23
NEDD9-210ENST00000505589 CARD14Q9BXL6 1004 aa13.63□□□□□ -0.23
NEDD9-210ENST00000505589 POLKQ9UBT6 870 aa13.63□□□□□ -0.23
NEDD9-210ENST00000505589 TIMELESSQ9UNS1 1208 aa13.63□□□□□ -0.23
NEDD9-210ENST00000505589 MTHFSP49914 203 aa13.62□□□□□ -0.23
NEDD9-210ENST00000505589 C1orf141Q5JVX7 400 aa13.62□□□□□ -0.23
NEDD9-210ENST00000505589 ZC3H4Q9UPT8 1303 aaKnown RBP13.62□□□□□ -0.23
NEDD9-210ENST00000505589 PKD1L3Q7Z443 1732 aa13.61□□□□□ -0.23
NEDD9-210ENST00000505589 PXDNLA1KZ92 1463 aa13.61□□□□□ -0.23
NEDD9-210ENST00000505589 CICQ96RK0 1608 aaPredicted RBP13.61□□□□□ -0.23
NEDD9-210ENST00000505589 JMYQ8N9B5 988 aa13.61□□□□□ -0.23
NEDD9-210ENST00000505589 NMRK2Q9NPI5 230 aa13.61□□□□□ -0.23
NEDD9-210ENST00000505589 MAP2P11137 1827 aaKnown RBP13.6□□□□□ -0.23
NEDD9-210ENST00000505589 ZPR1O75312 459 aa13.6□□□□□ -0.23
NEDD9-210ENST00000505589 KCNA3P22001 575 aa13.6□□□□□ -0.23
NEDD9-210ENST00000505589 EIF4A2Q14240 407 aaKnown RBP13.6□□□□□ -0.23
NEDD9-210ENST00000505589 C10orf71Q711Q0 1435 aa13.6□□□□□ -0.23
NEDD9-210ENST00000505589 SMC1BQ8NDV3 1235 aa13.6□□□□□ -0.23
NEDD9-210ENST00000505589 RRAGCQ9HB90 399 aa13.59□□□□□ -0.23
NEDD9-210ENST00000505589 RNF181Q9P0P0 153 aa13.59□□□□□ -0.23
NEDD9-210ENST00000505589 KIF20BQ96Q89 1820 aa13.59□□□□□ -0.23
NEDD9-210ENST00000505589 TOGARAM1Q9Y4F4 1720 aa13.58□□□□□ -0.24
NEDD9-210ENST00000505589 KIF13BQ9NQT8 1826 aa13.57□□□□□ -0.24
NEDD9-210ENST00000505589 PTCD1O75127 700 aaKnown RBP13.57□□□□□ -0.24
NEDD9-210ENST00000505589 VEGFAP15692 232 aaPredicted RBP13.57□□□□□ -0.24
NEDD9-210ENST00000505589 DPY19L2Q6NUT2 758 aa13.57□□□□□ -0.24
NEDD9-210ENST00000505589 ZNF530Q6P9A1 599 aaPredicted RBP13.57□□□□□ -0.24
NEDD9-210ENST00000505589 NFATC2IPQ8NCF5 419 aa13.57□□□□□ -0.24
NEDD9-210ENST00000505589 SLC4A9Q96Q91 983 aa13.57□□□□□ -0.24
NEDD9-210ENST00000505589 KDRP35968 1356 aa13.57□□□□□ -0.24
NEDD9-210ENST00000505589 ZNF831Q5JPB2 1677 aa13.56□□□□□ -0.24
NEDD9-210ENST00000505589 CRKLP46109 303 aaKnown RBP13.56□□□□□ -0.24
NEDD9-210ENST00000505589 PDZRN3Q9UPQ7 1066 aa13.56□□□□□ -0.24
NEDD9-210ENST00000505589 USP42Q9H9J4 1324 aaKnown RBP13.56□□□□□ -0.24
NEDD9-210ENST00000505589 LMNB1P20700 586 aa13.55□□□□□ -0.24
NEDD9-210ENST00000505589 TM4SF1P30408 202 aa13.55□□□□□ -0.24
NEDD9-210ENST00000505589 TNS4Q8IZW8 715 aa13.55□□□□□ -0.24
NEDD9-210ENST00000505589 GLTPD2A6NH11 291 aa13.54□□□□□ -0.24
NEDD9-210ENST00000505589 TNNT2P45379 298 aaPredicted RBP13.54□□□□□ -0.24
NEDD9-210ENST00000505589 FKBP8Q14318 412 aa13.54□□□□□ -0.24
NEDD9-210ENST00000505589 C4AP0C0L4 1744 aa13.53□□□□□ -0.24
NEDD9-210ENST00000505589 N4BP2Q86UW6 1770 aaPredicted RBP13.53□□□□□ -0.24
NEDD9-210ENST00000505589 COL13A1Q5TAT6 717 aaPredicted RBP13.53□□□□□ -0.24
NEDD9-210ENST00000505589 TTLL6Q8N841 843 aa13.53□□□□□ -0.24
NEDD9-210ENST00000505589 H0YIN7 160 aa13.52□□□□□ -0.25
NEDD9-210ENST00000505589 POLRMTO00411 1230 aaKnown RBP13.52□□□□□ -0.25
NEDD9-210ENST00000505589 PRELPP51888 382 aa13.52□□□□□ -0.25
NEDD9-210ENST00000505589 AKAP4Q5JQC9 854 aa13.52□□□□□ -0.25
NEDD9-210ENST00000505589 POLR3GLQ9BT43 218 aa13.52□□□□□ -0.25
NEDD9-210ENST00000505589 ARFGEF1Q9Y6D6 1849 aa13.51□□□□□ -0.25
NEDD9-210ENST00000505589 CHRNA5P30532 468 aa13.51□□□□□ -0.25
NEDD9-210ENST00000505589 MORC1Q86VD1 984 aa13.51□□□□□ -0.25
NEDD9-210ENST00000505589 SRP68Q9UHB9 627 aaKnown RBP13.51□□□□□ -0.25
NEDD9-210ENST00000505589 NARFQ9UHQ1 456 aa13.51□□□□□ -0.25
NEDD9-210ENST00000505589 A0A087WZG4 1122 aa13.5□□□□□ -0.25
NEDD9-210ENST00000505589 USPL1Q5W0Q7 1092 aa13.5□□□□□ -0.25
NEDD9-210ENST00000505589 INTS5Q6P9B9 1019 aaKnown RBP13.5□□□□□ -0.25
NEDD9-210ENST00000505589 NPM2Q86SE8 214 aaKnown RBP13.5□□□□□ -0.25
NEDD9-210ENST00000505589 VSIG10Q8N0Z9 540 aa13.5□□□□□ -0.25
NEDD9-210ENST00000505589 WDR90Q96KV7 1748 aa13.5□□□□□ -0.25
NEDD9-210ENST00000505589 KCPQ6ZWJ8 1503 aa13.49□□□□□ -0.25
NEDD9-210ENST00000505589 STARD3NLO95772 234 aa13.49□□□□□ -0.25
NEDD9-210ENST00000505589 SERPINB2P05120 415 aa13.49□□□□□ -0.25
NEDD9-210ENST00000505589 DDR1Q08345 913 aa13.49□□□□□ -0.25
NEDD9-210ENST00000505589 SULT6B1Q6IMI4 303 aa13.49□□□□□ -0.25
NEDD9-210ENST00000505589 SLC52A2Q9HAB3 445 aa13.49□□□□□ -0.25
NEDD9-210ENST00000505589 ANKRD26Q9UPS8 1709 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms