RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 LGR6Q9HBX8 967 aa17.01■□□□□ 0.31
TCOF1-207ENST00000504761 EFCAB6Q5THR3 1501 aa17.01■□□□□ 0.31
TCOF1-207ENST00000504761 SNRPA1P09661 255 aaKnown RBP17■□□□□ 0.31
TCOF1-207ENST00000504761 SYNE3Q6ZMZ3 975 aa17■□□□□ 0.31
TCOF1-207ENST00000504761 STK11IPQ8N1F8 1099 aa17■□□□□ 0.31
TCOF1-207ENST00000504761 NFXL1Q6ZNB6 911 aa17■□□□□ 0.31
TCOF1-207ENST00000504761 G2E3Q7L622 706 aa17■□□□□ 0.31
TCOF1-207ENST00000504761 XAGE3Q8WTP9 111 aa17■□□□□ 0.31
TCOF1-207ENST00000504761 ARHGAP45Q92619 1136 aa17■□□□□ 0.31
TCOF1-207ENST00000504761 GSE1Q14687 1217 aa17■□□□□ 0.31
TCOF1-207ENST00000504761 ACSBG1Q96GR2 724 aa17■□□□□ 0.31
TCOF1-207ENST00000504761 PRR36Q9H6K5 1346 aa17■□□□□ 0.31
TCOF1-207ENST00000504761 RABEP1Q15276 862 aa16.99■□□□□ 0.31
TCOF1-207ENST00000504761 PHAXQ9H814 394 aaKnown RBP16.99■□□□□ 0.31
TCOF1-207ENST00000504761 PLXNC1O60486 1568 aa16.99■□□□□ 0.31
TCOF1-207ENST00000504761 ANKRD13DQ6ZTN6 518 aa16.99■□□□□ 0.31
TCOF1-207ENST00000504761 NOL10Q9BSC4 688 aaKnown RBP16.99■□□□□ 0.31
TCOF1-207ENST00000504761 CPLX2Q6PUV4 134 aaKnown RBP16.98■□□□□ 0.31
TCOF1-207ENST00000504761 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.98■□□□□ 0.31
TCOF1-207ENST00000504761 TBC1D2BQ9UPU7 963 aa16.98■□□□□ 0.31
TCOF1-207ENST00000504761 UPF3BQ9BZI7 483 aaKnown RBP16.98■□□□□ 0.31
TCOF1-207ENST00000504761 ATP6V1DQ9Y5K8 247 aa16.98■□□□□ 0.31
TCOF1-207ENST00000504761 PIK3R4Q99570 1358 aa16.98■□□□□ 0.31
TCOF1-207ENST00000504761 MYOM2P54296 1465 aa16.98■□□□□ 0.31
TCOF1-207ENST00000504761 PHF23Q9BUL5 403 aaPredicted RBP16.98■□□□□ 0.31
TCOF1-207ENST00000504761 AKAP17AQ02040 695 aaKnown RBP16.97■□□□□ 0.31
TCOF1-207ENST00000504761 C16orf71Q8IYS4 520 aaPredicted RBP16.97■□□□□ 0.31
TCOF1-207ENST00000504761 SIRT1Q96EB6 747 aa16.97■□□□□ 0.31
TCOF1-207ENST00000504761 SBNO1A3KN83 1393 aa16.97■□□□□ 0.31
TCOF1-207ENST00000504761 MTMR7Q9Y216 660 aa16.97■□□□□ 0.31
TCOF1-207ENST00000504761 NUCB2P80303 420 aa16.97■□□□□ 0.31
TCOF1-207ENST00000504761 NAP1L5Q96NT1 182 aaPredicted RBP16.97■□□□□ 0.31
TCOF1-207ENST00000504761 TRMT112Q9UI30 125 aaKnown RBP16.97■□□□□ 0.31
TCOF1-207ENST00000504761 CSPP1Q1MSJ5 1256 aa16.96■□□□□ 0.31
TCOF1-207ENST00000504761 MAP3K5Q99683 1374 aa16.96■□□□□ 0.31
TCOF1-207ENST00000504761 ARAP3Q8WWN8 1544 aa16.96■□□□□ 0.31
TCOF1-207ENST00000504761 RASSF8Q8NHQ8 419 aa16.96■□□□□ 0.31
TCOF1-207ENST00000504761 MSNP26038 577 aaKnown RBP16.95■□□□□ 0.3
TCOF1-207ENST00000504761 STK3Q13188 491 aa16.95■□□□□ 0.3
TCOF1-207ENST00000504761 CWF19L2Q2TBE0 894 aaKnown RBP16.95■□□□□ 0.3
TCOF1-207ENST00000504761 RRP12Q5JTH9 1297 aaKnown RBP16.95■□□□□ 0.3
TCOF1-207ENST00000504761 C8orf37Q96NL8 207 aa16.95■□□□□ 0.3
TCOF1-207ENST00000504761 METTL24Q5JXM2 366 aa16.95■□□□□ 0.3
TCOF1-207ENST00000504761 BTG4Q9NY30 223 aa16.95■□□□□ 0.3
TCOF1-207ENST00000504761 IQGAP3Q86VI3 1631 aa16.95■□□□□ 0.3
TCOF1-207ENST00000504761 TOM1O60784 492 aa16.95■□□□□ 0.3
TCOF1-207ENST00000504761 SLAIN2Q9P270 581 aa16.95■□□□□ 0.3
TCOF1-207ENST00000504761 HIP1O00291 1037 aa16.94■□□□□ 0.3
TCOF1-207ENST00000504761 IL2RBP14784 551 aa16.94■□□□□ 0.3
TCOF1-207ENST00000504761 CDK11BP21127 795 aaKnown RBP16.94■□□□□ 0.3
TCOF1-207ENST00000504761 HDAC1Q13547 482 aaPredicted RBP16.94■□□□□ 0.3
TCOF1-207ENST00000504761 RNMTO43148 476 aaKnown RBP16.94■□□□□ 0.3
TCOF1-207ENST00000504761 GLRX3O76003 335 aaKnown RBP16.94■□□□□ 0.3
TCOF1-207ENST00000504761 PSMA5P28066 241 aa16.94■□□□□ 0.3
TCOF1-207ENST00000504761 ZBTB40Q9NUA8 1239 aa16.94■□□□□ 0.3
TCOF1-207ENST00000504761 CLTCL1P53675 1640 aa16.94■□□□□ 0.3
TCOF1-207ENST00000504761 PLEKHG1Q9ULL1 1385 aa16.93■□□□□ 0.3
TCOF1-207ENST00000504761 TET3O43151 1660 aa16.93■□□□□ 0.3
TCOF1-207ENST00000504761 RAB11FIP3O75154 756 aa16.93■□□□□ 0.3
TCOF1-207ENST00000504761 CHL1O00533 1208 aa16.93■□□□□ 0.3
TCOF1-207ENST00000504761 IDH1O75874 414 aaKnown RBP16.93■□□□□ 0.3
TCOF1-207ENST00000504761 TBC1D9Q6ZT07 1266 aa16.92■□□□□ 0.3
TCOF1-207ENST00000504761 ANKRD44Q8N8A2 993 aa16.92■□□□□ 0.3
TCOF1-207ENST00000504761 K7ELQ4 463 aaPredicted RBP16.92■□□□□ 0.3
TCOF1-207ENST00000504761 NUCB1Q02818 461 aa16.92■□□□□ 0.3
TCOF1-207ENST00000504761 KIF1BO60333 1816 aa16.92■□□□□ 0.3
TCOF1-207ENST00000504761 KDM5AP29375 1690 aaKnown RBP16.92■□□□□ 0.3
TCOF1-207ENST00000504761 IFIT5Q13325 482 aaKnown RBP16.92■□□□□ 0.3
TCOF1-207ENST00000504761 AMOTL1Q8IY63 956 aa16.92■□□□□ 0.3
TCOF1-207ENST00000504761 BLMP54132 1417 aaPredicted RBP16.91■□□□□ 0.3
TCOF1-207ENST00000504761 JAKMIP1Q96N16 626 aaKnown RBP16.91■□□□□ 0.3
TCOF1-207ENST00000504761 PA2G4Q9UQ80 394 aaKnown RBP16.91■□□□□ 0.3
TCOF1-207ENST00000504761 ERICH2A1L162 156 aa16.91■□□□□ 0.3
TCOF1-207ENST00000504761 GOLGA6L6A8MZA4 724 aa16.91■□□□□ 0.3
TCOF1-207ENST00000504761 DHX16O60231 1041 aaKnown RBP16.91■□□□□ 0.3
TCOF1-207ENST00000504761 CYP46A1Q9Y6A2 500 aa16.91■□□□□ 0.3
TCOF1-207ENST00000504761 KSR2Q6VAB6 950 aa16.91■□□□□ 0.3
TCOF1-207ENST00000504761 ABCF2Q9UG63 623 aa16.91■□□□□ 0.3
TCOF1-207ENST00000504761 SKOR2Q2VWA4 1001 aaPredicted RBP16.9■□□□□ 0.3
TCOF1-207ENST00000504761 CREBRFQ8IUR6 639 aa16.9■□□□□ 0.3
TCOF1-207ENST00000504761 BICD2Q8TD16 824 aa16.9■□□□□ 0.3
TCOF1-207ENST00000504761 SNRKQ9NRH2 765 aa16.9■□□□□ 0.3
TCOF1-207ENST00000504761 TRIM29Q14134 588 aa16.9■□□□□ 0.3
TCOF1-207ENST00000504761 PPP1R1BQ9UD71 204 aaPredicted RBP16.9■□□□□ 0.3
TCOF1-207ENST00000504761 ABCA9Q8IUA7 1624 aa16.9■□□□□ 0.3
TCOF1-207ENST00000504761 TMEM94Q12767 1356 aa16.9■□□□□ 0.3
TCOF1-207ENST00000504761 BMP2KLQ5H9B9 411 aa16.9■□□□□ 0.3
TCOF1-207ENST00000504761 RHPN1Q8TCX5 695 aa16.9■□□□□ 0.3
TCOF1-207ENST00000504761 CWC25Q9NXE8 425 aaPredicted RBP16.9■□□□□ 0.3
TCOF1-207ENST00000504761 ARHGAP31Q2M1Z3 1444 aa16.89■□□□□ 0.29
TCOF1-207ENST00000504761 DDB1Q16531 1140 aa16.89■□□□□ 0.29
TCOF1-207ENST00000504761 DCAF5Q96JK2 942 aa16.89■□□□□ 0.29
TCOF1-207ENST00000504761 LARP6Q9BRS8 491 aaKnown RBP16.89■□□□□ 0.29
TCOF1-207ENST00000504761 ZMYM4Q5VZL5 1548 aa16.89■□□□□ 0.29
TCOF1-207ENST00000504761 LMTK3Q96Q04 1460 aa16.89■□□□□ 0.29
TCOF1-207ENST00000504761 ZBTB7BO15156 539 aaPredicted RBP16.89■□□□□ 0.29
TCOF1-207ENST00000504761 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.89■□□□□ 0.29
TCOF1-207ENST00000504761 GRM8O00222 908 aa16.88■□□□□ 0.29
TCOF1-207ENST00000504761 IGHMBP2P38935 993 aaKnown RBP16.88■□□□□ 0.29
TCOF1-207ENST00000504761 NRDCO43847 1150 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms