RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 PRDM10Q9NQV6 1147 aa18■□□□□ 0.47
LSM6-204ENST00000504181 MKRN1Q9UHC7 482 aaKnown RBP18■□□□□ 0.47
LSM6-204ENST00000504181 CGNL1Q0VF96 1302 aa17.99■□□□□ 0.47
LSM6-204ENST00000504181 MAP3K19Q56UN5 1328 aa17.99■□□□□ 0.47
LSM6-204ENST00000504181 AMPHP49418 695 aa17.99■□□□□ 0.47
LSM6-204ENST00000504181 NBPF6Q5VWK0 638 aa17.99■□□□□ 0.47
LSM6-204ENST00000504181 RAPGEF4Q8WZA2 1011 aa17.99■□□□□ 0.47
LSM6-204ENST00000504181 NBPF4Q96M43 638 aa17.99■□□□□ 0.47
LSM6-204ENST00000504181 DICER1Q9UPY3 1922 aaKnown RBP17.99■□□□□ 0.47
LSM6-204ENST00000504181 LOC102724428A0A0B4J2F2 783 aa17.98■□□□□ 0.47
LSM6-204ENST00000504181 SIK1P57059 783 aa17.98■□□□□ 0.47
LSM6-204ENST00000504181 PIM2Q9P1W9 311 aa17.98■□□□□ 0.47
LSM6-204ENST00000504181 MYH14Q7Z406 1995 aaKnown RBP17.97■□□□□ 0.47
LSM6-204ENST00000504181 VEGFAP15692 232 aaPredicted RBP17.97■□□□□ 0.47
LSM6-204ENST00000504181 TATP17735 454 aaPredicted RBP17.97■□□□□ 0.47
LSM6-204ENST00000504181 FBLN1P23142 703 aa17.97■□□□□ 0.47
LSM6-204ENST00000504181 TMF1P82094 1093 aa17.97■□□□□ 0.47
LSM6-204ENST00000504181 HDGFL2Q7Z4V5 671 aaPredicted RBP17.97■□□□□ 0.47
LSM6-204ENST00000504181 PIGBQ92521 554 aa17.97■□□□□ 0.47
LSM6-204ENST00000504181 DLEC1Q9Y238 1755 aa17.96■□□□□ 0.47
LSM6-204ENST00000504181 TNRC18O15417 2968 aaPredicted RBP17.96■□□□□ 0.47
LSM6-204ENST00000504181 ITPK1Q13572 414 aa17.96■□□□□ 0.47
LSM6-204ENST00000504181 DALRD3Q5D0E6 543 aaKnown RBP17.96■□□□□ 0.47
LSM6-204ENST00000504181 NLGN1Q8N2Q7 840 aa17.96■□□□□ 0.47
LSM6-204ENST00000504181 TMC1Q8TDI8 760 aa17.96■□□□□ 0.47
LSM6-204ENST00000504181 CYP27B1O15528 508 aa17.95■□□□□ 0.46
LSM6-204ENST00000504181 RASSF7Q02833 373 aa17.95■□□□□ 0.46
LSM6-204ENST00000504181 PARP3Q9Y6F1 533 aa17.95■□□□□ 0.46
LSM6-204ENST00000504181 A0A1W2PP64 1363 aa17.94■□□□□ 0.46
LSM6-204ENST00000504181 AFDNP55196 1824 aaKnown RBP17.94■□□□□ 0.46
LSM6-204ENST00000504181 CTCFP49711 727 aaPredicted RBP17.94■□□□□ 0.46
LSM6-204ENST00000504181 ABHD8Q96I13 439 aa17.94■□□□□ 0.46
LSM6-204ENST00000504181 ZNF831Q5JPB2 1677 aa17.93■□□□□ 0.46
LSM6-204ENST00000504181 GLTPD2A6NH11 291 aa17.93■□□□□ 0.46
LSM6-204ENST00000504181 ATP6V1AP38606 617 aa17.93■□□□□ 0.46
LSM6-204ENST00000504181 MLLT1Q03111 559 aaPredicted RBP17.93■□□□□ 0.46
LSM6-204ENST00000504181 AIDAQ96BJ3 306 aa17.93■□□□□ 0.46
LSM6-204ENST00000504181 CREBZFQ9NS37 354 aa17.93■□□□□ 0.46
LSM6-204ENST00000504181 ZC3H4Q9UPT8 1303 aaKnown RBP17.93■□□□□ 0.46
LSM6-204ENST00000504181 KDM6AO15550 1401 aaPredicted RBP17.92■□□□□ 0.46
LSM6-204ENST00000504181 SMG6Q86US8 1419 aaKnown RBP17.92■□□□□ 0.46
LSM6-204ENST00000504181 TRAPPC3LQ5T215 181 aa17.92■□□□□ 0.46
LSM6-204ENST00000504181 SLC12A5Q9H2X9 1139 aa17.92■□□□□ 0.46
LSM6-204ENST00000504181 RTL1A6NKG5 1358 aa17.91■□□□□ 0.46
LSM6-204ENST00000504181 GYS1P13807 737 aa17.91■□□□□ 0.46
LSM6-204ENST00000504181 LBX1P52954 281 aa17.91■□□□□ 0.46
LSM6-204ENST00000504181 RTCBQ9Y3I0 505 aaKnown RBP17.91■□□□□ 0.46
LSM6-204ENST00000504181 CHRNA5P30532 468 aa17.9■□□□□ 0.46
LSM6-204ENST00000504181 ASAP1Q9ULH1 1129 aa17.9■□□□□ 0.46
LSM6-204ENST00000504181 CNTNAP1P78357 1384 aa17.9■□□□□ 0.46
LSM6-204ENST00000504181 ARHGEF1Q92888 912 aaKnown RBP17.89■□□□□ 0.45
LSM6-204ENST00000504181 COG3Q96JB2 828 aa17.89■□□□□ 0.45
LSM6-204ENST00000504181 ROCK2O75116 1388 aaKnown RBP17.89■□□□□ 0.45
LSM6-204ENST00000504181 TERF2IPQ9NYB0 399 aa17.88■□□□□ 0.45
LSM6-204ENST00000504181 CACNA1SQ13698 1873 aa17.88■□□□□ 0.45
LSM6-204ENST00000504181 POTECB2RU33 542 aa17.87■□□□□ 0.45
LSM6-204ENST00000504181 LMNB1P20700 586 aa17.87■□□□□ 0.45
LSM6-204ENST00000504181 RRS1Q15050 365 aaKnown RBP17.87■□□□□ 0.45
LSM6-204ENST00000504181 TMOD3Q9NYL9 352 aa17.87■□□□□ 0.45
LSM6-204ENST00000504181 KIF20BQ96Q89 1820 aa17.86■□□□□ 0.45
LSM6-204ENST00000504181 CCDC85CA6NKD9 419 aa17.86■□□□□ 0.45
LSM6-204ENST00000504181 RFC4P35249 363 aa17.86■□□□□ 0.45
LSM6-204ENST00000504181 PDE4DIPQ5VU43 2346 aa17.86■□□□□ 0.45
LSM6-204ENST00000504181 FER1L6Q2WGJ9 1857 aa17.85■□□□□ 0.45
LSM6-204ENST00000504181 KDRP35968 1356 aa17.84■□□□□ 0.45
LSM6-204ENST00000504181 VEGFBP49765 207 aa17.83■□□□□ 0.44
LSM6-204ENST00000504181 RGS19P49795 217 aa17.83■□□□□ 0.44
LSM6-204ENST00000504181 CHADLQ6NUI6 762 aa17.83■□□□□ 0.44
LSM6-204ENST00000504181 WBP1LQ9NX94 342 aa17.83■□□□□ 0.44
LSM6-204ENST00000504181 POTEIP0CG38 1075 aa17.82■□□□□ 0.44
LSM6-204ENST00000504181 POTEJP0CG39 1038 aa17.82■□□□□ 0.44
LSM6-204ENST00000504181 HSPA8P11142 646 aaKnown RBP17.82■□□□□ 0.44
LSM6-204ENST00000504181 DDR1Q08345 913 aa17.82■□□□□ 0.44
LSM6-204ENST00000504181 NKX1-1Q15270 411 aaPredicted RBP17.82■□□□□ 0.44
LSM6-204ENST00000504181 ATG3Q9NT62 314 aa17.82■□□□□ 0.44
LSM6-204ENST00000504181 SCN4AP35499 1836 aa17.82■□□□□ 0.44
LSM6-204ENST00000504181 NRXN2Q9P2S2 1712 aa17.81■□□□□ 0.44
LSM6-204ENST00000504181 ADAMTS7Q9UKP4 1686 aa17.81■□□□□ 0.44
LSM6-204ENST00000504181 SLC4A9Q96Q91 983 aa17.8■□□□□ 0.44
LSM6-204ENST00000504181 RBM42Q9BTD8 480 aaKnown RBP17.8■□□□□ 0.44
LSM6-204ENST00000504181 SRP68Q9UHB9 627 aaKnown RBP17.8■□□□□ 0.44
LSM6-204ENST00000504181 TJP1Q07157 1748 aa17.8■□□□□ 0.44
LSM6-204ENST00000504181 CNTNAP4Q9C0A0 1308 aa17.79■□□□□ 0.44
LSM6-204ENST00000504181 RPS6KA4O75676 772 aa17.79■□□□□ 0.44
LSM6-204ENST00000504181 MAPK8IP2Q13387 824 aaPredicted RBP17.79■□□□□ 0.44
LSM6-204ENST00000504181 FKBP8Q14318 412 aa17.79■□□□□ 0.44
LSM6-204ENST00000504181 HSP90AB2PQ58FF8 381 aa17.79■□□□□ 0.44
LSM6-204ENST00000504181 RC3H1Q5TC82 1133 aaKnown RBP17.79■□□□□ 0.44
LSM6-204ENST00000504181 DPY19L2Q6NUT2 758 aa17.79■□□□□ 0.44
LSM6-204ENST00000504181 L3MBTL2Q969R5 705 aa17.79■□□□□ 0.44
LSM6-204ENST00000504181 INSRP06213 1382 aa17.79■□□□□ 0.44
LSM6-204ENST00000504181 SPG7Q9UQ90 795 aa17.77■□□□□ 0.44
LSM6-204ENST00000504181 CASP8AP2Q9UKL3 1982 aa17.77■□□□□ 0.43
LSM6-204ENST00000504181 PASKQ96RG2 1323 aa17.76■□□□□ 0.43
LSM6-204ENST00000504181 ANKRD31Q8N7Z5 1873 aa17.76■□□□□ 0.43
LSM6-204ENST00000504181 NFKBIEO00221 500 aa17.76■□□□□ 0.43
LSM6-204ENST00000504181 CFAP44Q96MT7 982 aa17.76■□□□□ 0.43
LSM6-204ENST00000504181 ANKRD26Q9UPS8 1709 aa17.75■□□□□ 0.43
LSM6-204ENST00000504181 POLRMTO00411 1230 aaKnown RBP17.75■□□□□ 0.43
LSM6-204ENST00000504181 FLT4P35916 1363 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 107.2 ms