RNA–Protein interactions for RNA: ENST00000494646.1

MSH5-218, Transcript of mutS homolog 5, humanhuman

TSL 4

Gene MSH5, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-218ENST00000494646 HSP90AB1P08238 724 aaKnown RBP13.02□□□□□ -0.33
MSH5-218ENST00000494646 HMOX1P09601 288 aa13.02□□□□□ -0.33
MSH5-218ENST00000494646 CABP4P57796 275 aa13.02□□□□□ -0.33
MSH5-218ENST00000494646 ITPK1Q13572 414 aa13.02□□□□□ -0.33
MSH5-218ENST00000494646 AMOTQ4VCS5 1084 aa13.02□□□□□ -0.33
MSH5-218ENST00000494646 AMIGO3Q86WK7 504 aa13.02□□□□□ -0.33
MSH5-218ENST00000494646 LINC00116Q8NCU8 138 aa13.02□□□□□ -0.33
MSH5-218ENST00000494646 DCAF5Q96JK2 942 aa13.02□□□□□ -0.33
MSH5-218ENST00000494646 C4BP0C0L5 1744 aa13.02□□□□□ -0.33
MSH5-218ENST00000494646 NPM3O75607 178 aaKnown RBP13.01□□□□□ -0.33
MSH5-218ENST00000494646 HMGB2P26583 209 aaKnown RBP13.01□□□□□ -0.33
MSH5-218ENST00000494646 C1orf141Q5JVX7 400 aa13.01□□□□□ -0.33
MSH5-218ENST00000494646 PELP1Q8IZL8 1130 aaKnown RBP13.01□□□□□ -0.33
MSH5-218ENST00000494646 NFATC2IPQ8NCF5 419 aa13.01□□□□□ -0.33
MSH5-218ENST00000494646 FLAD1Q8NFF5 587 aa13.01□□□□□ -0.33
MSH5-218ENST00000494646 COL24A1Q17RW2 1714 aa13.01□□□□□ -0.33
MSH5-218ENST00000494646 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13□□□□□ -0.33
MSH5-218ENST00000494646 UBR3Q6ZT12 1888 aa12.99□□□□□ -0.33
MSH5-218ENST00000494646 DIAPH1O60610 1272 aaKnown RBP12.99□□□□□ -0.33
MSH5-218ENST00000494646 GPR162Q16538 588 aa12.99□□□□□ -0.33
MSH5-218ENST00000494646 NLGN2Q8NFZ4 835 aa12.99□□□□□ -0.33
MSH5-218ENST00000494646 SLC4A9Q96Q91 983 aa12.99□□□□□ -0.33
MSH5-218ENST00000494646 VIRMAQ69YN4 1812 aaKnown RBP12.98□□□□□ -0.33
MSH5-218ENST00000494646 GNPATO15228 680 aa12.98□□□□□ -0.33
MSH5-218ENST00000494646 PTCD1O75127 700 aaKnown RBP12.98□□□□□ -0.33
MSH5-218ENST00000494646 LGR6Q9HBX8 967 aa12.98□□□□□ -0.33
MSH5-218ENST00000494646 CHD4Q14839 1912 aa12.98□□□□□ -0.33
MSH5-218ENST00000494646 KDM6AO15550 1401 aaPredicted RBP12.97□□□□□ -0.33
MSH5-218ENST00000494646 U2SURPO15042 1029 aaKnown RBP12.97□□□□□ -0.33
MSH5-218ENST00000494646 KDRP35968 1356 aa12.96□□□□□ -0.33
MSH5-218ENST00000494646 ZBTB22O15209 634 aa12.96□□□□□ -0.33
MSH5-218ENST00000494646 MTHFSDQ2M296 383 aaKnown RBP12.96□□□□□ -0.33
MSH5-218ENST00000494646 AKAP4Q5JQC9 854 aa12.96□□□□□ -0.33
MSH5-218ENST00000494646 SCN11AQ9UI33 1791 aa12.96□□□□□ -0.34
MSH5-218ENST00000494646 MAP3K5Q99683 1374 aa12.95□□□□□ -0.34
MSH5-218ENST00000494646 SSFA2P28290 1259 aa12.95□□□□□ -0.34
MSH5-218ENST00000494646 TRAPPC3LQ5T215 181 aa12.95□□□□□ -0.34
MSH5-218ENST00000494646 PLEKHG2Q9H7P9 1386 aa12.94□□□□□ -0.34
MSH5-218ENST00000494646 MYH14Q7Z406 1995 aaKnown RBP12.94□□□□□ -0.34
MSH5-218ENST00000494646 RTCBQ9Y3I0 505 aaKnown RBP12.94□□□□□ -0.34
MSH5-218ENST00000494646 RNMTO43148 476 aaKnown RBP12.93□□□□□ -0.34
MSH5-218ENST00000494646 SLC39A6Q13433 755 aa12.93□□□□□ -0.34
MSH5-218ENST00000494646 ARHGEF1Q92888 912 aaKnown RBP12.93□□□□□ -0.34
MSH5-218ENST00000494646 NPC1L1Q9UHC9 1359 aa12.93□□□□□ -0.34
MSH5-218ENST00000494646 RC3H1Q5TC82 1133 aaKnown RBP12.92□□□□□ -0.34
MSH5-218ENST00000494646 SLC52A2Q9HAB3 445 aa12.92□□□□□ -0.34
MSH5-218ENST00000494646 WWC3Q9ULE0 1092 aa12.92□□□□□ -0.34
MSH5-218ENST00000494646 RPS6KA4O75676 772 aa12.91□□□□□ -0.34
MSH5-218ENST00000494646 YBX3P16989 372 aaKnown RBP eCLIP12.91□□□□□ -0.34
MSH5-218ENST00000494646 RFC4P35249 363 aa12.91□□□□□ -0.34
MSH5-218ENST00000494646 CD2APQ9Y5K6 639 aa12.91□□□□□ -0.34
MSH5-218ENST00000494646 COL5A3P25940 1745 aaPredicted RBP12.91□□□□□ -0.34
MSH5-218ENST00000494646 PPP2R1AP30153 589 aa12.9□□□□□ -0.34
MSH5-218ENST00000494646 MMP10P09238 476 aa12.89□□□□□ -0.35
MSH5-218ENST00000494646 CRKLP46109 303 aaKnown RBP12.89□□□□□ -0.35
MSH5-218ENST00000494646 DNAJC10Q8IXB1 793 aa12.89□□□□□ -0.35
MSH5-218ENST00000494646 ZNF784Q8NCA9 323 aaPredicted RBP12.89□□□□□ -0.35
MSH5-218ENST00000494646 CFAP53Q96M91 514 aa12.89□□□□□ -0.35
MSH5-218ENST00000494646 ZNF831Q5JPB2 1677 aa12.89□□□□□ -0.35
MSH5-218ENST00000494646 CNTNAP4Q9C0A0 1308 aa12.88□□□□□ -0.35
MSH5-218ENST00000494646 INTS5Q6P9B9 1019 aaKnown RBP12.88□□□□□ -0.35
MSH5-218ENST00000494646 NLGN1Q8N2Q7 840 aa12.88□□□□□ -0.35
MSH5-218ENST00000494646 IL17REQ8NFR9 667 aa12.88□□□□□ -0.35
MSH5-218ENST00000494646 PHACTR3Q96KR7 559 aa12.88□□□□□ -0.35
MSH5-218ENST00000494646 SRP68Q9UHB9 627 aaKnown RBP12.88□□□□□ -0.35
MSH5-218ENST00000494646 COL3A1P02461 1466 aaPredicted RBP12.88□□□□□ -0.35
MSH5-218ENST00000494646 GNAT3A8MTJ3 354 aa12.87□□□□□ -0.35
MSH5-218ENST00000494646 GRIN3BO60391 1043 aa12.87□□□□□ -0.35
MSH5-218ENST00000494646 GYS1P13807 737 aa12.87□□□□□ -0.35
MSH5-218ENST00000494646 NUDCQ9Y266 331 aa12.87□□□□□ -0.35
MSH5-218ENST00000494646 TJP1Q07157 1748 aa12.87□□□□□ -0.35
MSH5-218ENST00000494646 U2AF1L5P0DN76 240 aaPredicted RBP12.86□□□□□ -0.35
MSH5-218ENST00000494646 PRKAR2BP31323 418 aa12.86□□□□□ -0.35
MSH5-218ENST00000494646 U2AF1Q01081 240 aaKnown RBP eCLIP12.86□□□□□ -0.35
MSH5-218ENST00000494646 TEFQ10587 303 aa12.86□□□□□ -0.35
MSH5-218ENST00000494646 GAS2L2Q8NHY3 880 aa12.86□□□□□ -0.35
MSH5-218ENST00000494646 N4BP2Q86UW6 1770 aaPredicted RBP12.85□□□□□ -0.35
MSH5-218ENST00000494646 CYP19A1P11511 503 aaPredicted RBP12.85□□□□□ -0.35
MSH5-218ENST00000494646 RSPH6AQ9H0K4 717 aa12.85□□□□□ -0.35
MSH5-218ENST00000494646 CCDC87Q9NVE4 849 aa12.85□□□□□ -0.35
MSH5-218ENST00000494646 PARP3Q9Y6F1 533 aa12.85□□□□□ -0.35
MSH5-218ENST00000494646 A0A0G2JLW4 131 aa12.84□□□□□ -0.35
MSH5-218ENST00000494646 FKBP8Q14318 412 aa12.84□□□□□ -0.35
MSH5-218ENST00000494646 TTC5Q8N0Z6 440 aa12.84□□□□□ -0.35
MSH5-218ENST00000494646 C4AP0C0L4 1744 aa12.84□□□□□ -0.35
MSH5-218ENST00000494646 CANXP27824 592 aaKnown RBP12.83□□□□□ -0.36
MSH5-218ENST00000494646 USPL1Q5W0Q7 1092 aa12.83□□□□□ -0.36
MSH5-218ENST00000494646 ZBTB1Q9Y2K1 713 aa12.83□□□□□ -0.36
MSH5-218ENST00000494646 CICQ96RK0 1608 aaPredicted RBP12.82□□□□□ -0.36
MSH5-218ENST00000494646 KCNQ3O43525 872 aa12.82□□□□□ -0.36
MSH5-218ENST00000494646 ZPR1O75312 459 aa12.82□□□□□ -0.36
MSH5-218ENST00000494646 ADAMTS7Q9UKP4 1686 aa12.82□□□□□ -0.36
MSH5-218ENST00000494646 USP42Q9H9J4 1324 aaKnown RBP12.82□□□□□ -0.36
MSH5-218ENST00000494646 MRC1P22897 1456 aa12.81□□□□□ -0.36
MSH5-218ENST00000494646 BTBD11A6QL63 1104 aa12.81□□□□□ -0.36
MSH5-218ENST00000494646 FCHSD2O94868 740 aa12.81□□□□□ -0.36
MSH5-218ENST00000494646 TGFB2P61812 414 aa12.81□□□□□ -0.36
MSH5-218ENST00000494646 DCTN1Q14203 1278 aa12.81□□□□□ -0.36
MSH5-218ENST00000494646 ZNF790Q6PG37 636 aa12.81□□□□□ -0.36
MSH5-218ENST00000494646 MCM10Q7L590 875 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms