RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 INHAP05111 366 aa7.14□□□□□ -1.27
CPSF3-205ENST00000489629 PHKA2P46019 1235 aa7.14□□□□□ -1.27
CPSF3-205ENST00000489629 GSK3AP49840 483 aa7.14□□□□□ -1.27
CPSF3-205ENST00000489629 GDF10P55107 478 aa7.14□□□□□ -1.27
CPSF3-205ENST00000489629 TMEM132AQ24JP5 1023 aa7.14□□□□□ -1.27
CPSF3-205ENST00000489629 TMEM214Q6NUQ4 689 aaKnown RBP7.14□□□□□ -1.27
CPSF3-205ENST00000489629 NUCKS1Q9H1E3 243 aaKnown RBP7.14□□□□□ -1.27
CPSF3-205ENST00000489629 MBIPQ9NS73 344 aa7.14□□□□□ -1.27
CPSF3-205ENST00000489629 ADAMTS8Q9UP79 889 aa7.14□□□□□ -1.27
CPSF3-205ENST00000489629 PCDHGA11Q9Y5H2 935 aa7.14□□□□□ -1.27
CPSF3-205ENST00000489629 A0A1B0GTH6 734 aa7.13□□□□□ -1.27
CPSF3-205ENST00000489629 POM121CA8CG34 1229 aa7.13□□□□□ -1.27
CPSF3-205ENST00000489629 TMEM229AB2RXF0 380 aa7.13□□□□□ -1.27
CPSF3-205ENST00000489629 RAD21O60216 631 aa7.13□□□□□ -1.27
CPSF3-205ENST00000489629 UBTFP17480 764 aaKnown RBP7.13□□□□□ -1.27
CPSF3-205ENST00000489629 UBAP2LQ14157 1087 aaKnown RBP7.13□□□□□ -1.27
CPSF3-205ENST00000489629 TLR1Q15399 786 aa7.13□□□□□ -1.27
CPSF3-205ENST00000489629 GNASQ5JWF2 1037 aa7.13□□□□□ -1.27
CPSF3-205ENST00000489629 LYPD4Q6UWN0 246 aa7.13□□□□□ -1.27
CPSF3-205ENST00000489629 NFATC2IPQ8NCF5 419 aa7.13□□□□□ -1.27
CPSF3-205ENST00000489629 ADAMTS19Q8TE59 1207 aa7.13□□□□□ -1.27
CPSF3-205ENST00000489629 RHBDD1Q8TEB9 315 aa7.13□□□□□ -1.27
CPSF3-205ENST00000489629 SKIP12755 728 aa7.12□□□□□ -1.27
CPSF3-205ENST00000489629 KCNMA1Q12791 1236 aa7.12□□□□□ -1.27
CPSF3-205ENST00000489629 FOXR1Q6PIV2 292 aa7.12□□□□□ -1.27
CPSF3-205ENST00000489629 WWC1Q8IX03 1113 aa7.12□□□□□ -1.27
CPSF3-205ENST00000489629 ZNF295-AS1Q8N0V1 137 aa7.12□□□□□ -1.27
CPSF3-205ENST00000489629 SVOPQ8N4V2 548 aa7.12□□□□□ -1.27
CPSF3-205ENST00000489629 SLC4A9Q96Q91 983 aa7.12□□□□□ -1.27
CPSF3-205ENST00000489629 IGF1RP08069 1367 aa7.11□□□□□ -1.27
CPSF3-205ENST00000489629 LZTS3O60299 673 aaPredicted RBP7.11□□□□□ -1.27
CPSF3-205ENST00000489629 CELA2BP08218 269 aaPredicted RBP7.11□□□□□ -1.27
CPSF3-205ENST00000489629 MSX1P28360 303 aa7.11□□□□□ -1.27
CPSF3-205ENST00000489629 GTF2E1P29083 439 aaPredicted RBP7.11□□□□□ -1.27
CPSF3-205ENST00000489629 SMTNP53814 917 aa7.11□□□□□ -1.27
CPSF3-205ENST00000489629 GPAMQ9HCL2 828 aa7.11□□□□□ -1.27
CPSF3-205ENST00000489629 LBRQ14739 615 aaKnown RBP7.1□□□□□ -1.27
CPSF3-205ENST00000489629 MTFR1Q15390 333 aa7.1□□□□□ -1.27
CPSF3-205ENST00000489629 EML3Q32P44 896 aa7.1□□□□□ -1.27
CPSF3-205ENST00000489629 TRERF1Q96PN7 1200 aa7.1□□□□□ -1.27
CPSF3-205ENST00000489629 CFHR5Q9BXR6 569 aa7.1□□□□□ -1.27
CPSF3-205ENST00000489629 NCOA4Q13772 614 aa7.09□□□□□ -1.27
CPSF3-205ENST00000489629 RUBCNLQ9H714 662 aa7.09□□□□□ -1.27
CPSF3-205ENST00000489629 IQSEC3Q9UPP2 1182 aaPredicted RBP7.09□□□□□ -1.27
CPSF3-205ENST00000489629 NOD1Q9Y239 953 aa7.09□□□□□ -1.27
CPSF3-205ENST00000489629 CDK2AP1O14519 115 aa7.08□□□□□ -1.28
CPSF3-205ENST00000489629 FNBP4Q8N3X1 1017 aaPredicted RBP7.08□□□□□ -1.28
CPSF3-205ENST00000489629 ACDQ96AP0 544 aa7.08□□□□□ -1.28
CPSF3-205ENST00000489629 UCN2Q96RP3 112 aa7.08□□□□□ -1.28
CPSF3-205ENST00000489629 CRISPLD1Q9H336 500 aa7.08□□□□□ -1.28
CPSF3-205ENST00000489629 SERTAD1Q9UHV2 236 aa7.08□□□□□ -1.28
CPSF3-205ENST00000489629 USP3Q9Y6I4 520 aa7.08□□□□□ -1.28
CPSF3-205ENST00000489629 A6NJY4 79 aa7.07□□□□□ -1.28
CPSF3-205ENST00000489629 USP17L5A8MUK1 530 aa7.07□□□□□ -1.28
CPSF3-205ENST00000489629 MX2P20592 715 aa7.07□□□□□ -1.28
CPSF3-205ENST00000489629 PLA2G4AP47712 749 aa7.07□□□□□ -1.28
CPSF3-205ENST00000489629 GTF2IP78347 998 aa7.07□□□□□ -1.28
CPSF3-205ENST00000489629 HDGFL1Q5TGJ6 251 aa7.07□□□□□ -1.28
CPSF3-205ENST00000489629 NIFKQ9BYG3 293 aaKnown RBP7.07□□□□□ -1.28
CPSF3-205ENST00000489629 NDFIP2Q9NV92 336 aa7.07□□□□□ -1.28
CPSF3-205ENST00000489629 CSB-PGBD3P0DP91 1061 aa7.06□□□□□ -1.28
CPSF3-205ENST00000489629 ATP4AP20648 1035 aa7.06□□□□□ -1.28
CPSF3-205ENST00000489629 TBC1D9Q6ZT07 1266 aa7.06□□□□□ -1.28
CPSF3-205ENST00000489629 PLEKHM2Q8IWE5 1019 aa7.06□□□□□ -1.28
CPSF3-205ENST00000489629 DEPDC4Q8N2C3 294 aa7.06□□□□□ -1.28
CPSF3-205ENST00000489629 PGBD3Q8N328 593 aa7.06□□□□□ -1.28
CPSF3-205ENST00000489629 CLUAP1Q96AJ1 413 aa7.06□□□□□ -1.28
CPSF3-205ENST00000489629 ZBTB7BO15156 539 aaPredicted RBP7.05□□□□□ -1.28
CPSF3-205ENST00000489629 BCRP11274 1271 aa7.05□□□□□ -1.28
CPSF3-205ENST00000489629 MAP3K10Q02779 954 aa7.05□□□□□ -1.28
CPSF3-205ENST00000489629 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.05□□□□□ -1.28
CPSF3-205ENST00000489629 C1orf216Q8TAB5 229 aa7.05□□□□□ -1.28
CPSF3-205ENST00000489629 DNAAF2Q9NVR5 837 aaKnown RBP7.05□□□□□ -1.28
CPSF3-205ENST00000489629 ZNF358Q9NW07 568 aa7.05□□□□□ -1.28
CPSF3-205ENST00000489629 RNF225M0QZC1 329 aaPredicted RBP7.04□□□□□ -1.28
CPSF3-205ENST00000489629 BACH1O14867 736 aa7.04□□□□□ -1.28
CPSF3-205ENST00000489629 ATP9BO43861 1147 aa7.04□□□□□ -1.28
CPSF3-205ENST00000489629 MAP2K3P46734 347 aa7.04□□□□□ -1.28
CPSF3-205ENST00000489629 EPHA4P54764 986 aa7.04□□□□□ -1.28
CPSF3-205ENST00000489629 RASSF7Q02833 373 aa7.04□□□□□ -1.28
CPSF3-205ENST00000489629 EFHC2Q5JST6 749 aa7.04□□□□□ -1.28
CPSF3-205ENST00000489629 LRRC4BQ9NT99 713 aa7.04□□□□□ -1.28
CPSF3-205ENST00000489629 ATXN7L1Q9ULK2 861 aaPredicted RBP7.04□□□□□ -1.28
CPSF3-205ENST00000489629 PHF24Q9UPV7 400 aa7.04□□□□□ -1.28
CPSF3-205ENST00000489629 USP17L3A6NCW0 530 aa7.03□□□□□ -1.28
CPSF3-205ENST00000489629 USP17L4A6NCW7 530 aa7.03□□□□□ -1.28
CPSF3-205ENST00000489629 C2CD2LO14523 706 aa7.03□□□□□ -1.28
CPSF3-205ENST00000489629 BNIP3LO60238 219 aa7.03□□□□□ -1.28
CPSF3-205ENST00000489629 MARSP56192 900 aaKnown RBP7.03□□□□□ -1.28
CPSF3-205ENST00000489629 FOXK2Q01167 660 aa7.03□□□□□ -1.28
CPSF3-205ENST00000489629 USP17L2Q6R6M4 530 aa7.03□□□□□ -1.28
CPSF3-205ENST00000489629 USP17L1Q7RTZ2 530 aa7.03□□□□□ -1.28
CPSF3-205ENST00000489629 NLRP8Q86W28 1048 aa7.03□□□□□ -1.28
CPSF3-205ENST00000489629 KLRG1Q96E93 195 aa7.03□□□□□ -1.28
CPSF3-205ENST00000489629 SCHIP1Q9P0W5 487 aaPredicted RBP7.03□□□□□ -1.28
CPSF3-205ENST00000489629 NSFL1CQ9UNZ2 370 aaKnown RBP7.03□□□□□ -1.28
CPSF3-205ENST00000489629 KIAA1024Q9UPX6 916 aa7.03□□□□□ -1.28
CPSF3-205ENST00000489629 CLDN10P78369 228 aa7.02□□□□□ -1.29
CPSF3-205ENST00000489629 C1orf229Q6ZS94 237 aaPredicted RBP7.02□□□□□ -1.29
CPSF3-205ENST00000489629 PROSER2Q86WR7 435 aaPredicted RBP7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms