RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 KIF13BQ9NQT8 1826 aa22.62■■□□□ 1.21
USP48-210ENST00000489108 ATG3Q9NT62 314 aa22.62■■□□□ 1.21
USP48-210ENST00000489108 PPM1GO15355 546 aaPredicted RBP22.61■■□□□ 1.21
USP48-210ENST00000489108 TMF1P82094 1093 aa22.61■■□□□ 1.21
USP48-210ENST00000489108 TRAPPC3LQ5T215 181 aa22.61■■□□□ 1.21
USP48-210ENST00000489108 KIF20BQ96Q89 1820 aa22.61■■□□□ 1.21
USP48-210ENST00000489108 DPEP1P16444 411 aa22.6■■□□□ 1.21
USP48-210ENST00000489108 NLGN1Q8N2Q7 840 aa22.6■■□□□ 1.21
USP48-210ENST00000489108 NCAPD2Q15021 1401 aa22.59■■□□□ 1.21
USP48-210ENST00000489108 FCHSD2O94868 740 aa22.59■■□□□ 1.21
USP48-210ENST00000489108 EYA1Q99502 592 aa22.59■■□□□ 1.21
USP48-210ENST00000489108 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.59■■□□□ 1.211e-7■■■□□ 16.2
USP48-210ENST00000489108 RTCBQ9Y3I0 505 aaKnown RBP22.59■■□□□ 1.21
USP48-210ENST00000489108 PHKG2P15735 406 aa22.58■■□□□ 1.21
USP48-210ENST00000489108 IFNL2Q8IZJ0 200 aa22.58■■□□□ 1.21
USP48-210ENST00000489108 CARD14Q9BXL6 1004 aa22.58■■□□□ 1.21
USP48-210ENST00000489108 HTRA3P83110 453 aa22.57■■□□□ 1.2
USP48-210ENST00000489108 ARHGEF1Q92888 912 aaKnown RBP22.57■■□□□ 1.2
USP48-210ENST00000489108 RBM46Q8TBY0 533 aaKnown RBP22.56■■□□□ 1.2
USP48-210ENST00000489108 SLC4A9Q96Q91 983 aa22.56■■□□□ 1.2
USP48-210ENST00000489108 CCDC87Q9NVE4 849 aa22.56■■□□□ 1.2
USP48-210ENST00000489108 C10orf71Q711Q0 1435 aa22.56■■□□□ 1.2
USP48-210ENST00000489108 C9orf131Q5VYM1 1079 aa22.55■■□□□ 1.2
USP48-210ENST00000489108 WASHC2AQ641Q2 1341 aa22.55■■□□□ 1.2
USP48-210ENST00000489108 WDR90Q96KV7 1748 aa22.54■■□□□ 1.2
USP48-210ENST00000489108 GYS1P13807 737 aa22.54■■□□□ 1.2
USP48-210ENST00000489108 KCNA3P22001 575 aa22.54■■□□□ 1.2
USP48-210ENST00000489108 C16orf71Q8IYS4 520 aaPredicted RBP22.54■■□□□ 1.2
USP48-210ENST00000489108 RBM42Q9BTD8 480 aaKnown RBP22.54■■□□□ 1.2
USP48-210ENST00000489108 COL13A1Q5TAT6 717 aaPredicted RBP22.53■■□□□ 1.2
USP48-210ENST00000489108 RC3H1Q5TC82 1133 aaKnown RBP22.53■■□□□ 1.2
USP48-210ENST00000489108 KLRG1Q96E93 195 aa22.53■■□□□ 1.2
USP48-210ENST00000489108 PARP3Q9Y6F1 533 aa22.53■■□□□ 1.2
USP48-210ENST00000489108 BRCA1P38398 1863 aaKnown RBP22.52■■□□□ 1.2
USP48-210ENST00000489108 RFC4P35249 363 aa22.52■■□□□ 1.2
USP48-210ENST00000489108 KDRP35968 1356 aa22.51■■□□□ 1.19
USP48-210ENST00000489108 C4AP0C0L4 1744 aa22.51■■□□□ 1.19
USP48-210ENST00000489108 ADRA2BP18089 450 aa22.51■■□□□ 1.19
USP48-210ENST00000489108 RPS6KA4O75676 772 aa22.5■■□□□ 1.19
USP48-210ENST00000489108 CDCA8Q53HL2 280 aa22.5■■□□□ 1.19
USP48-210ENST00000489108 JMYQ8N9B5 988 aa22.5■■□□□ 1.19
USP48-210ENST00000489108 FSTL1Q12841 308 aa22.49■■□□□ 1.19
USP48-210ENST00000489108 PIM2Q9P1W9 311 aa22.49■■□□□ 1.19
USP48-210ENST00000489108 RRAGCQ9HB90 399 aa22.48■■□□□ 1.19
USP48-210ENST00000489108 POLKQ9UBT6 870 aa22.48■■□□□ 1.19
USP48-210ENST00000489108 ANKRD26Q9UPS8 1709 aa22.48■■□□□ 1.19
USP48-210ENST00000489108 ARFGEF1Q9Y6D6 1849 aa22.47■■□□□ 1.19
USP48-210ENST00000489108 ERVV-2B6SEH9 535 aa22.47■■□□□ 1.19
USP48-210ENST00000489108 CAPN15O75808 1086 aa22.47■■□□□ 1.19
USP48-210ENST00000489108 DCAF5Q96JK2 942 aa22.47■■□□□ 1.19
USP48-210ENST00000489108 CNTNAP4Q9C0A0 1308 aa22.47■■□□□ 1.19
USP48-210ENST00000489108 MYH14Q7Z406 1995 aaKnown RBP22.47■■□□□ 1.19
USP48-210ENST00000489108 KCPQ6ZWJ8 1503 aa22.47■■□□□ 1.19
USP48-210ENST00000489108 RNF181Q9P0P0 153 aa22.46■■□□□ 1.19
USP48-210ENST00000489108 KDM2BQ8NHM5 1336 aa22.46■■□□□ 1.19
USP48-210ENST00000489108 PLEKHG2Q9H7P9 1386 aa22.46■■□□□ 1.19
USP48-210ENST00000489108 ZNF831Q5JPB2 1677 aa22.46■■□□□ 1.19
USP48-210ENST00000489108 COL5A3P25940 1745 aaPredicted RBP22.45■■□□□ 1.19
USP48-210ENST00000489108 EIF4A2Q14240 407 aaKnown RBP22.45■■□□□ 1.18
USP48-210ENST00000489108 DALRD3Q5D0E6 543 aaKnown RBP22.45■■□□□ 1.18
USP48-210ENST00000489108 SRP68Q9UHB9 627 aaKnown RBP22.44■■□□□ 1.18
USP48-210ENST00000489108 CHRNA5P30532 468 aa22.42■■□□□ 1.18
USP48-210ENST00000489108 CABP4P57796 275 aa22.42■■□□□ 1.18
USP48-210ENST00000489108 FKBP8Q14318 412 aa22.42■■□□□ 1.18
USP48-210ENST00000489108 SBF1O95248 1867 aa22.41■■□□□ 1.18
USP48-210ENST00000489108 PTCD1O75127 700 aaKnown RBP22.41■■□□□ 1.18
USP48-210ENST00000489108 HSP90AB1P08238 724 aaKnown RBP22.41■■□□□ 1.18
USP48-210ENST00000489108 DDR1Q08345 913 aa22.41■■□□□ 1.18
USP48-210ENST00000489108 TNS4Q8IZW8 715 aa22.41■■□□□ 1.18
USP48-210ENST00000489108 TNNT2P45379 298 aaPredicted RBP22.4■■□□□ 1.18
USP48-210ENST00000489108 CRKLP46109 303 aaKnown RBP22.4■■□□□ 1.18
USP48-210ENST00000489108 PCNTO95613 3336 aa22.39■■□□□ 1.17
USP48-210ENST00000489108 PLEKHO1Q53GL0 409 aaPredicted RBP22.39■■□□□ 1.17
USP48-210ENST00000489108 SMC1BQ8NDV3 1235 aa22.38■■□□□ 1.17
USP48-210ENST00000489108 USP42Q9H9J4 1324 aaKnown RBP22.37■■□□□ 1.17
USP48-210ENST00000489108 ZNF530Q6P9A1 599 aaPredicted RBP22.37■■□□□ 1.17
USP48-210ENST00000489108 KDM6AO15550 1401 aaPredicted RBP22.37■■□□□ 1.17
USP48-210ENST00000489108 TM4SF1P30408 202 aa22.36■■□□□ 1.17
USP48-210ENST00000489108 PRELPP51888 382 aa22.36■■□□□ 1.17
USP48-210ENST00000489108 TNRC6CQ9HCJ0 1690 aaKnown RBP22.36■■□□□ 1.17
USP48-210ENST00000489108 POLRMTO00411 1230 aaKnown RBP22.35■■□□□ 1.17
USP48-210ENST00000489108 MTHFSP49914 203 aa22.35■■□□□ 1.17
USP48-210ENST00000489108 NFATC2IPQ8NCF5 419 aa22.35■■□□□ 1.17
USP48-210ENST00000489108 RASSF7Q02833 373 aa22.34■■□□□ 1.17
USP48-210ENST00000489108 AMOTQ4VCS5 1084 aa22.33■■□□□ 1.17
USP48-210ENST00000489108 INTS5Q6P9B9 1019 aaKnown RBP22.33■■□□□ 1.17
USP48-210ENST00000489108 VEGFAP15692 232 aaPredicted RBP22.3■■□□□ 1.16
USP48-210ENST00000489108 C1orf141Q5JVX7 400 aa22.3■■□□□ 1.16
USP48-210ENST00000489108 USPL1Q5W0Q7 1092 aa22.3■■□□□ 1.16
USP48-210ENST00000489108 TJP1Q07157 1748 aa22.29■■□□□ 1.16
USP48-210ENST00000489108 GLTPD2A6NH11 291 aa22.29■■□□□ 1.16
USP48-210ENST00000489108 ZPR1O75312 459 aa22.29■■□□□ 1.16
USP48-210ENST00000489108 HSPA1AP0DMV8 641 aaKnown RBP22.29■■□□□ 1.16
USP48-210ENST00000489108 HSPA1BP0DMV9 641 aaKnown RBP22.29■■□□□ 1.16
USP48-210ENST00000489108 AEBP1Q8IUX7 1158 aa22.29■■□□□ 1.16
USP48-210ENST00000489108 ZC3H4Q9UPT8 1303 aaKnown RBP22.29■■□□□ 1.16
USP48-210ENST00000489108 ADAMTS7Q9UKP4 1686 aa22.28■■□□□ 1.16
USP48-210ENST00000489108 LMNB1P20700 586 aa22.28■■□□□ 1.16
USP48-210ENST00000489108 POLR3GLQ9BT43 218 aa22.28■■□□□ 1.16
USP48-210ENST00000489108 DNAJC10Q8IXB1 793 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 124.1 ms