RNA–Protein interactions for RNA: ENST00000486210.1

MCF2L-226, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 548 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-226ENST00000486210 KIF3CO14782 793 aa24.18■■□□□ 1.46
MCF2L-226ENST00000486210 WASHC2AQ641Q2 1341 aa24.17■■□□□ 1.46
MCF2L-226ENST00000486210 N4BP2Q86UW6 1770 aaPredicted RBP24.17■■□□□ 1.46
MCF2L-226ENST00000486210 ASAP1Q9ULH1 1129 aa24.17■■□□□ 1.46
MCF2L-226ENST00000486210 SPG7Q9UQ90 795 aa24.16■■□□□ 1.46
MCF2L-226ENST00000486210 GNPATO15228 680 aa24.15■■□□□ 1.46
MCF2L-226ENST00000486210 EYA1Q99502 592 aa24.15■■□□□ 1.46
MCF2L-226ENST00000486210 PXDNLA1KZ92 1463 aa24.14■■□□□ 1.46
MCF2L-226ENST00000486210 TMOD3Q9NYL9 352 aa24.14■■□□□ 1.45
MCF2L-226ENST00000486210 PPM1GO15355 546 aaPredicted RBP24.13■■□□□ 1.45
MCF2L-226ENST00000486210 ATP6V1AP38606 617 aa24.13■■□□□ 1.45
MCF2L-226ENST00000486210 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.13■■□□□ 1.45
MCF2L-226ENST00000486210 PHKG2P15735 406 aa24.12■■□□□ 1.45
MCF2L-226ENST00000486210 ATG3Q9NT62 314 aa24.12■■□□□ 1.45
MCF2L-226ENST00000486210 MMP10P09238 476 aa24.11■■□□□ 1.45
MCF2L-226ENST00000486210 KDRP35968 1356 aa24.11■■□□□ 1.45
MCF2L-226ENST00000486210 COL5A3P25940 1745 aaPredicted RBP24.1■■□□□ 1.45
MCF2L-226ENST00000486210 IFNL2Q8IZJ0 200 aa24.1■■□□□ 1.45
MCF2L-226ENST00000486210 ZNF831Q5JPB2 1677 aa24.1■■□□□ 1.45
MCF2L-226ENST00000486210 BRCA1P38398 1863 aaKnown RBP24.1■■□□□ 1.45
MCF2L-226ENST00000486210 ZNF316A6NFI3 1004 aaPredicted RBP24.08■■□□□ 1.45
MCF2L-226ENST00000486210 SLC4A9Q96Q91 983 aa24.08■■□□□ 1.45
MCF2L-226ENST00000486210 C10orf71Q711Q0 1435 aa24.08■■□□□ 1.44
MCF2L-226ENST00000486210 POLKQ9UBT6 870 aa24.07■■□□□ 1.44
MCF2L-226ENST00000486210 C4AP0C0L4 1744 aa24.07■■□□□ 1.44
MCF2L-226ENST00000486210 TGFB2P61812 414 aa24.05■■□□□ 1.44
MCF2L-226ENST00000486210 MYH14Q7Z406 1995 aaKnown RBP24.05■■□□□ 1.44
MCF2L-226ENST00000486210 A0A0G2JLW4 131 aa24.04■■□□□ 1.44
MCF2L-226ENST00000486210 BCS1LQ9Y276 419 aa24.04■■□□□ 1.44
MCF2L-226ENST00000486210 EIF4A2Q14240 407 aaKnown RBP24.03■■□□□ 1.44
MCF2L-226ENST00000486210 TRAPPC3LQ5T215 181 aa24.03■■□□□ 1.44
MCF2L-226ENST00000486210 PANK3Q9H999 370 aa24.03■■□□□ 1.44
MCF2L-226ENST00000486210 RTCBQ9Y3I0 505 aaKnown RBP24.03■■□□□ 1.44
MCF2L-226ENST00000486210 NLGN1Q8N2Q7 840 aa24.02■■□□□ 1.44
MCF2L-226ENST00000486210 ARHGEF1Q92888 912 aaKnown RBP24.02■■□□□ 1.44
MCF2L-226ENST00000486210 ARFGEF1Q9Y6D6 1849 aa24.01■■□□□ 1.43
MCF2L-226ENST00000486210 GYS1P13807 737 aa24.01■■□□□ 1.43
MCF2L-226ENST00000486210 PLEKHG2Q9H7P9 1386 aa24.01■■□□□ 1.43
MCF2L-226ENST00000486210 DPEP1P16444 411 aa24■■□□□ 1.43
MCF2L-226ENST00000486210 APLP1P51693 650 aa24■■□□□ 1.43
MCF2L-226ENST00000486210 RBM42Q9BTD8 480 aaKnown RBP24■■□□□ 1.43
MCF2L-226ENST00000486210 TOMM70O94826 608 aa23.99■■□□□ 1.43
MCF2L-226ENST00000486210 RC3H1Q5TC82 1133 aaKnown RBP23.99■■□□□ 1.43
MCF2L-226ENST00000486210 DNAJC5GQ8N7S2 189 aa23.99■■□□□ 1.43
MCF2L-226ENST00000486210 NMRK2Q9NPI5 230 aa23.99■■□□□ 1.43
MCF2L-226ENST00000486210 CNTNAP4Q9C0A0 1308 aa23.99■■□□□ 1.43
MCF2L-226ENST00000486210 KDM6AO15550 1401 aaPredicted RBP23.99■■□□□ 1.43
MCF2L-226ENST00000486210 ERVV-2B6SEH9 535 aa23.98■■□□□ 1.43
MCF2L-226ENST00000486210 RPS6KA4O75676 772 aa23.97■■□□□ 1.43
MCF2L-226ENST00000486210 ADRA2BP18089 450 aa23.97■■□□□ 1.43
MCF2L-226ENST00000486210 KCNA3P22001 575 aa23.97■■□□□ 1.43
MCF2L-226ENST00000486210 ARHGAP27Q6ZUM4 889 aa23.97■■□□□ 1.43
MCF2L-226ENST00000486210 WDR90Q96KV7 1748 aa23.97■■□□□ 1.43
MCF2L-226ENST00000486210 CCDC87Q9NVE4 849 aa23.97■■□□□ 1.43
MCF2L-226ENST00000486210 FCHSD2O94868 740 aa23.96■■□□□ 1.43
MCF2L-226ENST00000486210 TNNT2P45379 298 aaPredicted RBP23.95■■□□□ 1.42
MCF2L-226ENST00000486210 DCAF5Q96JK2 942 aa23.95■■□□□ 1.42
MCF2L-226ENST00000486210 TJP1Q07157 1748 aa23.94■■□□□ 1.42
MCF2L-226ENST00000486210 RFC4P35249 363 aa23.94■■□□□ 1.42
MCF2L-226ENST00000486210 DDX10Q13206 875 aaKnown RBP23.94■■□□□ 1.42
MCF2L-226ENST00000486210 PARP3Q9Y6F1 533 aa23.94■■□□□ 1.42
MCF2L-226ENST00000486210 HSP90AB1P08238 724 aaKnown RBP23.92■■□□□ 1.42
MCF2L-226ENST00000486210 ADAMTS7Q9UKP4 1686 aa23.92■■□□□ 1.42
MCF2L-226ENST00000486210 C9orf131Q5VYM1 1079 aa23.91■■□□□ 1.42
MCF2L-226ENST00000486210 SBF1O95248 1867 aa23.91■■□□□ 1.42
MCF2L-226ENST00000486210 PER1O15534 1290 aaPredicted RBP23.9■■□□□ 1.42
MCF2L-226ENST00000486210 SRP68Q9UHB9 627 aaKnown RBP23.9■■□□□ 1.42
MCF2L-226ENST00000486210 CABP4P57796 275 aa23.89■■□□□ 1.41
MCF2L-226ENST00000486210 PLEKHO1Q53GL0 409 aaPredicted RBP23.89■■□□□ 1.41
MCF2L-226ENST00000486210 ZNF530Q6P9A1 599 aaPredicted RBP23.89■■□□□ 1.41
MCF2L-226ENST00000486210 RBM46Q8TBY0 533 aaKnown RBP23.89■■□□□ 1.41
MCF2L-226ENST00000486210 KCPQ6ZWJ8 1503 aa23.89■■□□□ 1.41
MCF2L-226ENST00000486210 PTCD1O75127 700 aaKnown RBP23.88■■□□□ 1.41
MCF2L-226ENST00000486210 CRKLP46109 303 aaKnown RBP23.88■■□□□ 1.41
MCF2L-226ENST00000486210 DDR1Q08345 913 aa23.88■■□□□ 1.41
MCF2L-226ENST00000486210 USP42Q9H9J4 1324 aaKnown RBP23.87■■□□□ 1.41
MCF2L-226ENST00000486210 HTRA3P83110 453 aa23.87■■□□□ 1.41
MCF2L-226ENST00000486210 FKBP8Q14318 412 aa23.87■■□□□ 1.41
MCF2L-226ENST00000486210 PIM2Q9P1W9 311 aa23.87■■□□□ 1.41
MCF2L-226ENST00000486210 SCN11AQ9UI33 1791 aa23.86■■□□□ 1.41
MCF2L-226ENST00000486210 AEBP1Q8IUX7 1158 aa23.86■■□□□ 1.41
MCF2L-226ENST00000486210 AMOTQ4VCS5 1084 aa23.85■■□□□ 1.41
MCF2L-226ENST00000486210 KNSTRNQ9Y448 316 aa23.85■■□□□ 1.41
MCF2L-226ENST00000486210 TNRC6CQ9HCJ0 1690 aaKnown RBP23.84■■□□□ 1.41
MCF2L-226ENST00000486210 MTHFSP49914 203 aa23.84■■□□□ 1.41
MCF2L-226ENST00000486210 NFATC2IPQ8NCF5 419 aa23.84■■□□□ 1.41
MCF2L-226ENST00000486210 CHRNA5P30532 468 aa23.83■■□□□ 1.41
MCF2L-226ENST00000486210 DALRD3Q5D0E6 543 aaKnown RBP23.83■■□□□ 1.41
MCF2L-226ENST00000486210 AMER1Q5JTC6 1135 aaPredicted RBP23.83■■□□□ 1.41
MCF2L-226ENST00000486210 AFDNP55196 1824 aaKnown RBP23.82■■□□□ 1.4
MCF2L-226ENST00000486210 POLRMTO00411 1230 aaKnown RBP23.82■■□□□ 1.4
MCF2L-226ENST00000486210 INTS5Q6P9B9 1019 aaKnown RBP23.82■■□□□ 1.4
MCF2L-226ENST00000486210 RNF181Q9P0P0 153 aa23.82■■□□□ 1.4
MCF2L-226ENST00000486210 C16orf71Q8IYS4 520 aaPredicted RBP23.81■■□□□ 1.4
MCF2L-226ENST00000486210 KLRG1Q96E93 195 aa23.81■■□□□ 1.4
MCF2L-226ENST00000486210 VIRMAQ69YN4 1812 aaKnown RBP23.8■■□□□ 1.4
MCF2L-226ENST00000486210 TM4SF1P30408 202 aa23.8■■□□□ 1.4
MCF2L-226ENST00000486210 FSTL1Q12841 308 aa23.8■■□□□ 1.4
MCF2L-226ENST00000486210 C1orf141Q5JVX7 400 aa23.8■■□□□ 1.4
MCF2L-226ENST00000486210 JMYQ8N9B5 988 aa23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms