RNA–Protein interactions for RNA: ENST00000486116.5

PTPN7-213, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 4

Gene PTPN7, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-213	ENST00000486116	ITPK1	Q13572	414 aa		13.92	□□□□□ -0.18
PTPN7-213	ENST00000486116	NBPF6	Q5VWK0	638 aa		13.92	□□□□□ -0.18
PTPN7-213	ENST00000486116	NBPF4	Q96M43	638 aa		13.92	□□□□□ -0.18
PTPN7-213	ENST00000486116	CCDC87	Q9NVE4	849 aa		13.92	□□□□□ -0.18
PTPN7-213	ENST00000486116	LOC102724428	A0A0B4J2F2	783 aa		13.91	□□□□□ -0.18
PTPN7-213	ENST00000486116	SIK1	P57059	783 aa		13.91	□□□□□ -0.18
PTPN7-213	ENST00000486116	PIGB	Q92521	554 aa		13.91	□□□□□ -0.18
PTPN7-213	ENST00000486116	MKRN1	Q9UHC7	482 aa	Known RBP	13.91	□□□□□ -0.18
PTPN7-213	ENST00000486116	ZNF831	Q5JPB2	1677 aa		13.91	□□□□□ -0.18
PTPN7-213	ENST00000486116	DLEC1	Q9Y238	1755 aa		13.91	□□□□□ -0.18
PTPN7-213	ENST00000486116	CYP27B1	O15528	508 aa		13.9	□□□□□ -0.18
PTPN7-213	ENST00000486116	VEGFA	P15692	232 aa	Predicted RBP	13.9	□□□□□ -0.18
PTPN7-213	ENST00000486116	FBLN1	P23142	703 aa		13.9	□□□□□ -0.18
PTPN7-213	ENST00000486116	PIM2	Q9P1W9	311 aa		13.9	□□□□□ -0.18
PTPN7-213	ENST00000486116	MYH14	Q7Z406	1995 aa	Known RBP	13.89	□□□□□ -0.19
PTPN7-213	ENST00000486116		A0A1W2PP64	1363 aa		13.89	□□□□□ -0.19
PTPN7-213	ENST00000486116	DALRD3	Q5D0E6	543 aa	Known RBP	13.89	□□□□□ -0.19
PTPN7-213	ENST00000486116	NLGN1	Q8N2Q7	840 aa		13.89	□□□□□ -0.19
PTPN7-213	ENST00000486116	RAPGEF4	Q8WZA2	1011 aa		13.89	□□□□□ -0.19
PTPN7-213	ENST00000486116	ABHD8	Q96I13	439 aa		13.89	□□□□□ -0.19
PTPN7-213	ENST00000486116	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.89	□□□□□ -0.19
PTPN7-213	ENST00000486116	DICER1	Q9UPY3	1922 aa	Known RBP	13.88	□□□□□ -0.19
PTPN7-213	ENST00000486116	GLTPD2	A6NH11	291 aa		13.88	□□□□□ -0.19
PTPN7-213	ENST00000486116	TAT	P17735	454 aa	Predicted RBP	13.88	□□□□□ -0.19
PTPN7-213	ENST00000486116	AMPH	P49418	695 aa		13.88	□□□□□ -0.19
PTPN7-213	ENST00000486116	TMF1	P82094	1093 aa		13.88	□□□□□ -0.19
PTPN7-213	ENST00000486116	RASSF7	Q02833	373 aa		13.88	□□□□□ -0.19
PTPN7-213	ENST00000486116	RTL1	A6NKG5	1358 aa		13.87	□□□□□ -0.19
PTPN7-213	ENST00000486116	GYS1	P13807	737 aa		13.87	□□□□□ -0.19
PTPN7-213	ENST00000486116	CTCF	P49711	727 aa	Predicted RBP	13.87	□□□□□ -0.19
PTPN7-213	ENST00000486116	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.87	□□□□□ -0.19
PTPN7-213	ENST00000486116	CREBZF	Q9NS37	354 aa		13.87	□□□□□ -0.19
PTPN7-213	ENST00000486116	CNTNAP1	P78357	1384 aa		13.86	□□□□□ -0.19
PTPN7-213	ENST00000486116	POTEC	B2RU33	542 aa		13.86	□□□□□ -0.19
PTPN7-213	ENST00000486116	SLC12A5	Q9H2X9	1139 aa		13.86	□□□□□ -0.19
PTPN7-213	ENST00000486116	PARP3	Q9Y6F1	533 aa		13.86	□□□□□ -0.19
PTPN7-213	ENST00000486116	AFDN	P55196	1824 aa	Known RBP	13.85	□□□□□ -0.19
PTPN7-213	ENST00000486116	KDR	P35968	1356 aa		13.85	□□□□□ -0.19
PTPN7-213	ENST00000486116	TNRC18	O15417	2968 aa	Predicted RBP	13.85	□□□□□ -0.19
PTPN7-213	ENST00000486116	CHRNA5	P30532	468 aa		13.85	□□□□□ -0.19
PTPN7-213	ENST00000486116	ATP6V1A	P38606	617 aa		13.85	□□□□□ -0.19
PTPN7-213	ENST00000486116	MLLT1	Q03111	559 aa	Predicted RBP	13.85	□□□□□ -0.19
PTPN7-213	ENST00000486116	TRAPPC3L	Q5T215	181 aa		13.85	□□□□□ -0.19
PTPN7-213	ENST00000486116	TMC1	Q8TDI8	760 aa		13.85	□□□□□ -0.19
PTPN7-213	ENST00000486116	SMG6	Q86US8	1419 aa	Known RBP	13.84	□□□□□ -0.19
PTPN7-213	ENST00000486116	LBX1	P52954	281 aa		13.84	□□□□□ -0.19
PTPN7-213	ENST00000486116	ARHGEF1	Q92888	912 aa	Known RBP	13.84	□□□□□ -0.19
PTPN7-213	ENST00000486116	ASAP1	Q9ULH1	1129 aa		13.84	□□□□□ -0.19
PTPN7-213	ENST00000486116	RGS19	P49795	217 aa		13.83	□□□□□ -0.2
PTPN7-213	ENST00000486116	AIDA	Q96BJ3	306 aa		13.83	□□□□□ -0.2
PTPN7-213	ENST00000486116	RTCB	Q9Y3I0	505 aa	Known RBP	13.83	□□□□□ -0.2
PTPN7-213	ENST00000486116	ADAMTS7	Q9UKP4	1686 aa		13.82	□□□□□ -0.2
PTPN7-213	ENST00000486116	LMNB1	P20700	586 aa		13.82	□□□□□ -0.2
PTPN7-213	ENST00000486116	RRS1	Q15050	365 aa	Known RBP	13.82	□□□□□ -0.2
PTPN7-213	ENST00000486116	NKX1-1	Q15270	411 aa	Predicted RBP	13.82	□□□□□ -0.2
PTPN7-213	ENST00000486116	ROCK2	O75116	1388 aa	Known RBP	13.82	□□□□□ -0.2
PTPN7-213	ENST00000486116	ADRA2B	P18089	450 aa		13.81	□□□□□ -0.2
PTPN7-213	ENST00000486116	DDR1	Q08345	913 aa		13.81	□□□□□ -0.2
PTPN7-213	ENST00000486116	COG3	Q96JB2	828 aa		13.81	□□□□□ -0.2
PTPN7-213	ENST00000486116	WBP1L	Q9NX94	342 aa		13.81	□□□□□ -0.2
PTPN7-213	ENST00000486116	TERF2IP	Q9NYB0	399 aa		13.81	□□□□□ -0.2
PTPN7-213	ENST00000486116	PDE4DIP	Q5VU43	2346 aa		13.8	□□□□□ -0.2
PTPN7-213	ENST00000486116	HSPA8	P11142	646 aa	Known RBP	13.8	□□□□□ -0.2
PTPN7-213	ENST00000486116	VEGFB	P49765	207 aa		13.8	□□□□□ -0.2
PTPN7-213	ENST00000486116	SLC4A9	Q96Q91	983 aa		13.8	□□□□□ -0.2
PTPN7-213	ENST00000486116	ATG3	Q9NT62	314 aa		13.8	□□□□□ -0.2
PTPN7-213	ENST00000486116	TMOD3	Q9NYL9	352 aa		13.8	□□□□□ -0.2
PTPN7-213	ENST00000486116	NRXN2	Q9P2S2	1712 aa		13.8	□□□□□ -0.2
PTPN7-213	ENST00000486116	FER1L6	Q2WGJ9	1857 aa		13.8	□□□□□ -0.2
PTPN7-213	ENST00000486116	KIF20B	Q96Q89	1820 aa		13.79	□□□□□ -0.2
PTPN7-213	ENST00000486116	POTEI	P0CG38	1075 aa		13.79	□□□□□ -0.2
PTPN7-213	ENST00000486116	POTEJ	P0CG39	1038 aa		13.79	□□□□□ -0.2
PTPN7-213	ENST00000486116	RFC4	P35249	363 aa		13.79	□□□□□ -0.2
PTPN7-213	ENST00000486116	CHADL	Q6NUI6	762 aa		13.79	□□□□□ -0.2
PTPN7-213	ENST00000486116	NCAPD2	Q15021	1401 aa		13.79	□□□□□ -0.2
PTPN7-213	ENST00000486116	CCDC85C	A6NKD9	419 aa		13.78	□□□□□ -0.2
PTPN7-213	ENST00000486116	CNTNAP4	Q9C0A0	1308 aa		13.78	□□□□□ -0.2
PTPN7-213	ENST00000486116	INSR	P06213	1382 aa		13.78	□□□□□ -0.2
PTPN7-213	ENST00000486116	THSD7B	Q9C0I4	1608 aa		13.78	□□□□□ -0.2
PTPN7-213	ENST00000486116	TJP1	Q07157	1748 aa		13.78	□□□□□ -0.2
PTPN7-213	ENST00000486116	RPS6KA4	O75676	772 aa		13.77	□□□□□ -0.21
PTPN7-213	ENST00000486116	FKBP8	Q14318	412 aa		13.77	□□□□□ -0.21
PTPN7-213	ENST00000486116	HSP90AB2P	Q58FF8	381 aa		13.77	□□□□□ -0.21
PTPN7-213	ENST00000486116	RC3H1	Q5TC82	1133 aa	Known RBP	13.77	□□□□□ -0.21
PTPN7-213	ENST00000486116	L3MBTL2	Q969R5	705 aa		13.77	□□□□□ -0.21
PTPN7-213	ENST00000486116	PASK	Q96RG2	1323 aa		13.77	□□□□□ -0.21
PTPN7-213	ENST00000486116	SRP68	Q9UHB9	627 aa	Known RBP	13.77	□□□□□ -0.21
PTPN7-213	ENST00000486116	SCN4A	P35499	1836 aa		13.76	□□□□□ -0.21
PTPN7-213	ENST00000486116	NFKBIE	O00221	500 aa		13.76	□□□□□ -0.21
PTPN7-213	ENST00000486116	ANKRD26	Q9UPS8	1709 aa		13.76	□□□□□ -0.21
PTPN7-213	ENST00000486116	CACNA1S	Q13698	1873 aa		13.75	□□□□□ -0.21
PTPN7-213	ENST00000486116	ADAMTSL1	Q8N6G6	1762 aa		13.75	□□□□□ -0.21
PTPN7-213	ENST00000486116	USP42	Q9H9J4	1324 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-213	ENST00000486116	POLRMT	O00411	1230 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-213	ENST00000486116	ANKRD31	Q8N7Z5	1873 aa		13.74	□□□□□ -0.21
PTPN7-213	ENST00000486116	COL11A2	P13942	1736 aa	Predicted RBP	13.73	□□□□□ -0.21
PTPN7-213	ENST00000486116	FLT4	P35916	1363 aa		13.73	□□□□□ -0.21
PTPN7-213	ENST00000486116	RBM42	Q9BTD8	480 aa	Known RBP	13.73	□□□□□ -0.21
PTPN7-213	ENST00000486116	SPG7	Q9UQ90	795 aa		13.73	□□□□□ -0.21
PTPN7-213	ENST00000486116	PHKG2	P15735	406 aa		13.72	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms