RNA–Protein interactions for RNA: ENST00000477937.2

HDAC7-222, Transcript of histone deacetylase 7, human

TSL 5

Gene HDAC7, Length 410 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC7-222	ENST00000477937	COL23A1	Q86Y22	540 aa	Predicted RBP	18.6	■□□□□ 0.57
HDAC7-222	ENST00000477937	AK7	Q96M32	723 aa		18.6	■□□□□ 0.57
HDAC7-222	ENST00000477937	UBR3	Q6ZT12	1888 aa		18.6	■□□□□ 0.57
HDAC7-222	ENST00000477937	AKAP4	Q5JQC9	854 aa		18.59	■□□□□ 0.57
HDAC7-222	ENST00000477937	CFAP53	Q96M91	514 aa		18.59	■□□□□ 0.57
HDAC7-222	ENST00000477937	FHDC1	Q9C0D6	1143 aa	Predicted RBP	18.59	■□□□□ 0.57
HDAC7-222	ENST00000477937	U2SURP	O15042	1029 aa	Known RBP	18.58	■□□□□ 0.56
HDAC7-222	ENST00000477937	COL3A1	P02461	1466 aa	Predicted RBP	18.58	■□□□□ 0.56
HDAC7-222	ENST00000477937	ZNF831	Q5JPB2	1677 aa		18.57	■□□□□ 0.56
HDAC7-222	ENST00000477937	NFATC2IP	Q8NCF5	419 aa		18.57	■□□□□ 0.56
HDAC7-222	ENST00000477937	SYT17	Q9BSW7	474 aa		18.57	■□□□□ 0.56
HDAC7-222	ENST00000477937	RBM42	Q9BTD8	480 aa	Known RBP	18.57	■□□□□ 0.56
HDAC7-222	ENST00000477937	LINC00116	Q8NCU8	138 aa		18.56	■□□□□ 0.56
HDAC7-222	ENST00000477937	ITPK1	Q13572	414 aa		18.55	■□□□□ 0.56
HDAC7-222	ENST00000477937	PPP2R1A	P30153	589 aa		18.54	■□□□□ 0.56
HDAC7-222	ENST00000477937	MTHFSD	Q2M296	383 aa	Known RBP	18.54	■□□□□ 0.56
HDAC7-222	ENST00000477937	PHF14	O94880	888 aa		18.53	■□□□□ 0.56
HDAC7-222	ENST00000477937	SSFA2	P28290	1259 aa		18.53	■□□□□ 0.56
HDAC7-222	ENST00000477937	LGR6	Q9HBX8	967 aa		18.53	■□□□□ 0.56
HDAC7-222	ENST00000477937	NUDC	Q9Y266	331 aa		18.53	■□□□□ 0.56
HDAC7-222	ENST00000477937	MAP3K5	Q99683	1374 aa		18.53	■□□□□ 0.56
HDAC7-222	ENST00000477937	COL5A3	P25940	1745 aa	Predicted RBP	18.52	■□□□□ 0.56
HDAC7-222	ENST00000477937	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	18.52	■□□□□ 0.56
HDAC7-222	ENST00000477937	RNMT	O43148	476 aa	Known RBP	18.52	■□□□□ 0.56
HDAC7-222	ENST00000477937	PTCD1	O75127	700 aa	Known RBP	18.52	■□□□□ 0.56
HDAC7-222	ENST00000477937	GNPAT	O15228	680 aa		18.51	■□□□□ 0.55
HDAC7-222	ENST00000477937	MSL1	Q68DK7	614 aa		18.51	■□□□□ 0.55
HDAC7-222	ENST00000477937	KLHL34	Q8N239	644 aa		18.51	■□□□□ 0.55
HDAC7-222	ENST00000477937	SLC4A9	Q96Q91	983 aa		18.51	■□□□□ 0.55
HDAC7-222	ENST00000477937	SLC52A2	Q9HAB3	445 aa		18.51	■□□□□ 0.55
HDAC7-222	ENST00000477937	RC3H1	Q5TC82	1133 aa	Known RBP	18.5	■□□□□ 0.55
HDAC7-222	ENST00000477937	SMIM5	Q71RC9	77 aa		18.5	■□□□□ 0.55
HDAC7-222	ENST00000477937	AMIGO3	Q86WK7	504 aa		18.5	■□□□□ 0.55
HDAC7-222	ENST00000477937	ADAMTS7	Q9UKP4	1686 aa		18.5	■□□□□ 0.55
HDAC7-222	ENST00000477937	GAS2L2	Q8NHY3	880 aa		18.49	■□□□□ 0.55
HDAC7-222	ENST00000477937	RTCB	Q9Y3I0	505 aa	Known RBP	18.49	■□□□□ 0.55
HDAC7-222	ENST00000477937	MYH14	Q7Z406	1995 aa	Known RBP	18.49	■□□□□ 0.55
HDAC7-222	ENST00000477937	MRC1	P22897	1456 aa		18.47	■□□□□ 0.55
HDAC7-222	ENST00000477937	U2AF1L5	P0DN76	240 aa	Predicted RBP	18.47	■□□□□ 0.55
HDAC7-222	ENST00000477937	U2AF1	Q01081	240 aa	Known RBP eCLIP	18.47	■□□□□ 0.55
HDAC7-222	ENST00000477937	TRAPPC3L	Q5T215	181 aa		18.47	■□□□□ 0.55
HDAC7-222	ENST00000477937	CNTNAP4	Q9C0A0	1308 aa		18.47	■□□□□ 0.55
HDAC7-222	ENST00000477937	GNAT3	A8MTJ3	354 aa		18.46	■□□□□ 0.55
HDAC7-222	ENST00000477937	PRKAR2B	P31323	418 aa		18.46	■□□□□ 0.55
HDAC7-222	ENST00000477937	RSPH6A	Q9H0K4	717 aa		18.46	■□□□□ 0.55
HDAC7-222	ENST00000477937	CIC	Q96RK0	1608 aa	Predicted RBP	18.45	■□□□□ 0.54
HDAC7-222	ENST00000477937	RPS6KA4	O75676	772 aa		18.45	■□□□□ 0.54
HDAC7-222	ENST00000477937	TJP1	Q07157	1748 aa		18.45	■□□□□ 0.54
HDAC7-222	ENST00000477937	CHD4	Q14839	1912 aa		18.45	■□□□□ 0.54
HDAC7-222	ENST00000477937	FCHSD2	O94868	740 aa		18.44	■□□□□ 0.54
HDAC7-222	ENST00000477937	ADRA2B	P18089	450 aa		18.44	■□□□□ 0.54
HDAC7-222	ENST00000477937	SLC39A6	Q13433	755 aa		18.44	■□□□□ 0.54
HDAC7-222	ENST00000477937	PHACTR3	Q96KR7	559 aa		18.44	■□□□□ 0.54
HDAC7-222	ENST00000477937	YY1	P25490	414 aa		18.43	■□□□□ 0.54
HDAC7-222	ENST00000477937	CRKL	P46109	303 aa	Known RBP	18.43	■□□□□ 0.54
HDAC7-222	ENST00000477937	TEF	Q10587	303 aa		18.43	■□□□□ 0.54
HDAC7-222	ENST00000477937	GPR162	Q16538	588 aa		18.43	■□□□□ 0.54
HDAC7-222	ENST00000477937	IL17RE	Q8NFR9	667 aa		18.43	■□□□□ 0.54
HDAC7-222	ENST00000477937	SIPA1L3	O60292	1781 aa	Predicted RBP	18.42	■□□□□ 0.54
HDAC7-222	ENST00000477937	RFC4	P35249	363 aa		18.42	■□□□□ 0.54
HDAC7-222	ENST00000477937	ARHGEF1	Q92888	912 aa	Known RBP	18.42	■□□□□ 0.54
HDAC7-222	ENST00000477937	CD2AP	Q9Y5K6	639 aa		18.42	■□□□□ 0.54
HDAC7-222	ENST00000477937	UBR2	Q8IWV8	1755 aa		18.41	■□□□□ 0.54
HDAC7-222	ENST00000477937	DDX10	Q13206	875 aa	Known RBP	18.41	■□□□□ 0.54
HDAC7-222	ENST00000477937	NLGN2	Q8NFZ4	835 aa		18.41	■□□□□ 0.54
HDAC7-222	ENST00000477937	C4A	P0C0L4	1744 aa		18.4	■□□□□ 0.54
HDAC7-222	ENST00000477937	DNAJC10	Q8IXB1	793 aa		18.4	■□□□□ 0.54
HDAC7-222	ENST00000477937	TTC5	Q8N0Z6	440 aa		18.4	■□□□□ 0.54
HDAC7-222	ENST00000477937	NLGN1	Q8N2Q7	840 aa		18.4	■□□□□ 0.54
HDAC7-222	ENST00000477937	KCP	Q6ZWJ8	1503 aa		18.39	■□□□□ 0.54
HDAC7-222	ENST00000477937	RALBP1	Q15311	655 aa		18.39	■□□□□ 0.53
HDAC7-222	ENST00000477937	PELP1	Q8IZL8	1130 aa	Known RBP	18.39	■□□□□ 0.53
HDAC7-222	ENST00000477937	VSIG10	Q8N0Z9	540 aa		18.39	■□□□□ 0.53
HDAC7-222	ENST00000477937	NEFM	P07197	916 aa		18.38	■□□□□ 0.53
HDAC7-222	ENST00000477937	INTS5	Q6P9B9	1019 aa	Known RBP	18.38	■□□□□ 0.53
HDAC7-222	ENST00000477937	RTF1	Q92541	710 aa	Known RBP	18.38	■□□□□ 0.53
HDAC7-222	ENST00000477937	CCDC87	Q9NVE4	849 aa		18.38	■□□□□ 0.53
HDAC7-222	ENST00000477937	MMP10	P09238	476 aa		18.37	■□□□□ 0.53
HDAC7-222	ENST00000477937	CYP19A1	P11511	503 aa	Predicted RBP	18.37	■□□□□ 0.53
HDAC7-222	ENST00000477937	ZNF790	Q6PG37	636 aa		18.37	■□□□□ 0.53
HDAC7-222	ENST00000477937	CEMIP	Q8WUJ3	1361 aa		18.37	■□□□□ 0.53
HDAC7-222	ENST00000477937	GYS1	P13807	737 aa		18.36	■□□□□ 0.53
HDAC7-222	ENST00000477937	DLG5	Q8TDM6	1919 aa		18.36	■□□□□ 0.53
HDAC7-222	ENST00000477937	PNN	Q9H307	717 aa	Known RBP	18.35	■□□□□ 0.53
HDAC7-222	ENST00000477937	BTBD11	A6QL63	1104 aa		18.34	■□□□□ 0.53
HDAC7-222	ENST00000477937	HTATSF1	O43719	755 aa	Known RBP	18.34	■□□□□ 0.53
HDAC7-222	ENST00000477937	ZNF496	Q96IT1	587 aa	Predicted RBP	18.34	■□□□□ 0.53
HDAC7-222	ENST00000477937	TEX13A	Q9BXU3	409 aa	Predicted RBP	18.34	■□□□□ 0.53
HDAC7-222	ENST00000477937	KIF13B	Q9NQT8	1826 aa		18.33	■□□□□ 0.53
HDAC7-222	ENST00000477937	USP42	Q9H9J4	1324 aa	Known RBP	18.33	■□□□□ 0.53
HDAC7-222	ENST00000477937	ZPR1	O75312	459 aa		18.33	■□□□□ 0.52
HDAC7-222	ENST00000477937	STARD3NL	O95772	234 aa		18.33	■□□□□ 0.52
HDAC7-222	ENST00000477937	MCM10	Q7L590	875 aa		18.33	■□□□□ 0.52
HDAC7-222	ENST00000477937	SRP68	Q9UHB9	627 aa	Known RBP	18.33	■□□□□ 0.52
HDAC7-222	ENST00000477937	HEG1	Q9ULI3	1381 aa		18.32	■□□□□ 0.52
HDAC7-222	ENST00000477937	SOS1	Q07889	1333 aa	Predicted RBP	18.32	■□□□□ 0.52
HDAC7-222	ENST00000477937	GRIN3B	O60391	1043 aa		18.32	■□□□□ 0.52
HDAC7-222	ENST00000477937	ZEB1	P37275	1124 aa	Predicted RBP	18.32	■□□□□ 0.52
HDAC7-222	ENST00000477937	FMNL2	Q96PY5	1086 aa		18.32	■□□□□ 0.52
HDAC7-222	ENST00000477937	PARP3	Q9Y6F1	533 aa		18.32	■□□□□ 0.52

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