RNA–Protein interactions for RNA: ENST00000476387.1

COL1A1-205, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 600 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-205ENST00000476387 LINC00116Q8NCU8 138 aa21.93■■□□□ 1.1
COL1A1-205ENST00000476387 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.92■■□□□ 1.1
COL1A1-205ENST00000476387 ATP6V1AP38606 617 aa21.92■■□□□ 1.1
COL1A1-205ENST00000476387 CNGB1Q14028 1251 aaPredicted RBP21.92■■□□□ 1.1
COL1A1-205ENST00000476387 GPR162Q16538 588 aa21.92■■□□□ 1.1
COL1A1-205ENST00000476387 SULT6B1Q6IMI4 303 aa21.92■■□□□ 1.1
COL1A1-205ENST00000476387 KDM6AO15550 1401 aaPredicted RBP21.91■■□□□ 1.1
COL1A1-205ENST00000476387 ITPK1Q13572 414 aa21.91■■□□□ 1.1
COL1A1-205ENST00000476387 C1orf141Q5JVX7 400 aa21.91■■□□□ 1.1
COL1A1-205ENST00000476387 AMIGO3Q86WK7 504 aa21.91■■□□□ 1.1
COL1A1-205ENST00000476387 CHD4Q14839 1912 aa21.9■■□□□ 1.1
COL1A1-205ENST00000476387 NLGN2Q8NFZ4 835 aa21.9■■□□□ 1.1
COL1A1-205ENST00000476387 ZNF831Q5JPB2 1677 aa21.9■■□□□ 1.1
COL1A1-205ENST00000476387 PHF14O94880 888 aa21.89■■□□□ 1.09
COL1A1-205ENST00000476387 MTHFSP49914 203 aa21.89■■□□□ 1.09
COL1A1-205ENST00000476387 CD2APQ9Y5K6 639 aa21.88■■□□□ 1.09
COL1A1-205ENST00000476387 GNPATO15228 680 aa21.87■■□□□ 1.09
COL1A1-205ENST00000476387 CABP4P57796 275 aa21.87■■□□□ 1.09
COL1A1-205ENST00000476387 GOLGB1Q14789 3259 aaKnown RBP21.87■■□□□ 1.09
COL1A1-205ENST00000476387 ZNF784Q8NCA9 323 aaPredicted RBP21.85■■□□□ 1.09
COL1A1-205ENST00000476387 SLC4A9Q96Q91 983 aa21.85■■□□□ 1.09
COL1A1-205ENST00000476387 RBM42Q9BTD8 480 aaKnown RBP21.85■■□□□ 1.09
COL1A1-205ENST00000476387 RC3H1Q5TC82 1133 aaKnown RBP21.84■■□□□ 1.09
COL1A1-205ENST00000476387 SMIM5Q71RC9 77 aa21.84■■□□□ 1.09
COL1A1-205ENST00000476387 PELP1Q8IZL8 1130 aaKnown RBP21.84■■□□□ 1.09
COL1A1-205ENST00000476387 CNTNAP4Q9C0A0 1308 aa21.83■■□□□ 1.09
COL1A1-205ENST00000476387 GRIN3BO60391 1043 aa21.83■■□□□ 1.09
COL1A1-205ENST00000476387 AKAP4Q5JQC9 854 aa21.83■■□□□ 1.09
COL1A1-205ENST00000476387 DIAPH1O60610 1272 aaKnown RBP21.82■■□□□ 1.08
COL1A1-205ENST00000476387 ADRA2BP18089 450 aa21.82■■□□□ 1.08
COL1A1-205ENST00000476387 NFATC2IPQ8NCF5 419 aa21.82■■□□□ 1.08
COL1A1-205ENST00000476387 RTCBQ9Y3I0 505 aaKnown RBP21.82■■□□□ 1.08
COL1A1-205ENST00000476387 COL5A3P25940 1745 aaPredicted RBP21.8■■□□□ 1.08
COL1A1-205ENST00000476387 SCN11AQ9UI33 1791 aa21.8■■□□□ 1.08
COL1A1-205ENST00000476387 COL3A1P02461 1466 aaPredicted RBP21.8■■□□□ 1.08
COL1A1-205ENST00000476387 YBX3P16989 372 aaKnown RBP eCLIP21.8■■□□□ 1.08
COL1A1-205ENST00000476387 TRAPPC3LQ5T215 181 aa21.8■■□□□ 1.08
COL1A1-205ENST00000476387 VIRMAQ69YN4 1812 aaKnown RBP21.79■■□□□ 1.08
COL1A1-205ENST00000476387 RPS6KA4O75676 772 aa21.78■■□□□ 1.08
COL1A1-205ENST00000476387 HMOX1P09601 288 aa21.78■■□□□ 1.08
COL1A1-205ENST00000476387 CICQ96RK0 1608 aaPredicted RBP21.77■■□□□ 1.08
COL1A1-205ENST00000476387 PTCD1O75127 700 aaKnown RBP21.77■■□□□ 1.08
COL1A1-205ENST00000476387 SLC52A2Q9HAB3 445 aa21.77■■□□□ 1.08
COL1A1-205ENST00000476387 MRC1P22897 1456 aa21.77■■□□□ 1.07
COL1A1-205ENST00000476387 NLGN1Q8N2Q7 840 aa21.76■■□□□ 1.07
COL1A1-205ENST00000476387 ARHGEF1Q92888 912 aaKnown RBP21.76■■□□□ 1.07
COL1A1-205ENST00000476387 CFAP53Q96M91 514 aa21.76■■□□□ 1.07
COL1A1-205ENST00000476387 MMP10P09238 476 aa21.75■■□□□ 1.07
COL1A1-205ENST00000476387 MYH14Q7Z406 1995 aaKnown RBP21.74■■□□□ 1.07
COL1A1-205ENST00000476387 RNMTO43148 476 aaKnown RBP21.74■■□□□ 1.07
COL1A1-205ENST00000476387 RFC4P35249 363 aa21.74■■□□□ 1.07
COL1A1-205ENST00000476387 CRKLP46109 303 aaKnown RBP21.74■■□□□ 1.07
COL1A1-205ENST00000476387 MTHFSDQ2M296 383 aaKnown RBP21.74■■□□□ 1.07
COL1A1-205ENST00000476387 LGR6Q9HBX8 967 aa21.74■■□□□ 1.07
COL1A1-205ENST00000476387 ADAMTS7Q9UKP4 1686 aa21.73■■□□□ 1.07
COL1A1-205ENST00000476387 ZEB1P37275 1124 aaPredicted RBP21.73■■□□□ 1.07
COL1A1-205ENST00000476387 U2SURPO15042 1029 aaKnown RBP21.72■■□□□ 1.07
COL1A1-205ENST00000476387 GYS1P13807 737 aa21.72■■□□□ 1.07
COL1A1-205ENST00000476387 PPP2R1AP30153 589 aa21.72■■□□□ 1.07
COL1A1-205ENST00000476387 TJP1Q07157 1748 aa21.72■■□□□ 1.07
COL1A1-205ENST00000476387 KIF13BQ9NQT8 1826 aa21.69■■□□□ 1.06
COL1A1-205ENST00000476387 C4AP0C0L4 1744 aa21.69■■□□□ 1.06
COL1A1-205ENST00000476387 GAS2L2Q8NHY3 880 aa21.68■■□□□ 1.06
COL1A1-205ENST00000476387 C10orf71Q711Q0 1435 aa21.67■■□□□ 1.06
COL1A1-205ENST00000476387 INTS5Q6P9B9 1019 aaKnown RBP21.67■■□□□ 1.06
COL1A1-205ENST00000476387 NUDCQ9Y266 331 aa21.67■■□□□ 1.06
COL1A1-205ENST00000476387 KCPQ6ZWJ8 1503 aa21.66■■□□□ 1.06
COL1A1-205ENST00000476387 USP42Q9H9J4 1324 aaKnown RBP21.66■■□□□ 1.06
COL1A1-205ENST00000476387 TGFB2P61812 414 aa21.66■■□□□ 1.06
COL1A1-205ENST00000476387 SLC39A6Q13433 755 aa21.66■■□□□ 1.06
COL1A1-205ENST00000476387 DNAJC10Q8IXB1 793 aa21.66■■□□□ 1.06
COL1A1-205ENST00000476387 VSIG10Q8N0Z9 540 aa21.66■■□□□ 1.06
COL1A1-205ENST00000476387 CCDC87Q9NVE4 849 aa21.66■■□□□ 1.06
COL1A1-205ENST00000476387 PARP3Q9Y6F1 533 aa21.66■■□□□ 1.06
COL1A1-205ENST00000476387 PXDNLA1KZ92 1463 aa21.65■■□□□ 1.06
COL1A1-205ENST00000476387 DDX10Q13206 875 aaKnown RBP21.65■■□□□ 1.06
COL1A1-205ENST00000476387 GNAT3A8MTJ3 354 aa21.64■■□□□ 1.05
COL1A1-205ENST00000476387 CYP19A1P11511 503 aaPredicted RBP21.64■■□□□ 1.05
COL1A1-205ENST00000476387 SOS1Q07889 1333 aaPredicted RBP21.63■■□□□ 1.05
COL1A1-205ENST00000476387 SRP68Q9UHB9 627 aaKnown RBP21.63■■□□□ 1.05
COL1A1-205ENST00000476387 UBR2Q8IWV8 1755 aa21.62■■□□□ 1.05
COL1A1-205ENST00000476387 KIAA1551Q9HCM1 1747 aa21.62■■□□□ 1.05
COL1A1-205ENST00000476387 C1QTNF8P60827 252 aa21.61■■□□□ 1.05
COL1A1-205ENST00000476387 TEFQ10587 303 aa21.61■■□□□ 1.05
COL1A1-205ENST00000476387 FKBP8Q14318 412 aa21.61■■□□□ 1.05
COL1A1-205ENST00000476387 TTC5Q8N0Z6 440 aa21.61■■□□□ 1.05
COL1A1-205ENST00000476387 IL17REQ8NFR9 667 aa21.61■■□□□ 1.05
COL1A1-205ENST00000476387 ADCY9O60503 1353 aa21.61■■□□□ 1.05
COL1A1-205ENST00000476387 ZPR1O75312 459 aa21.6■■□□□ 1.05
COL1A1-205ENST00000476387 GIGYF1O75420 1035 aaPredicted RBP21.6■■□□□ 1.05
COL1A1-205ENST00000476387 U2AF1L5P0DN76 240 aaPredicted RBP21.6■■□□□ 1.05
COL1A1-205ENST00000476387 U2AF1Q01081 240 aaKnown RBP eCLIP21.6■■□□□ 1.05
COL1A1-205ENST00000476387 RSPH6AQ9H0K4 717 aa21.6■■□□□ 1.05
COL1A1-205ENST00000476387 WWC3Q9ULE0 1092 aa21.6■■□□□ 1.05
COL1A1-205ENST00000476387 A0A0G2JLW4 131 aa21.59■■□□□ 1.05
COL1A1-205ENST00000476387 PRKAR2BP31323 418 aa21.59■■□□□ 1.05
COL1A1-205ENST00000476387 ATP10DQ9P241 1426 aa21.59■■□□□ 1.05
COL1A1-205ENST00000476387 CEMIPQ8WUJ3 1361 aa21.59■■□□□ 1.05
COL1A1-205ENST00000476387 DDR1Q08345 913 aa21.58■■□□□ 1.05
COL1A1-205ENST00000476387 RALBP1Q15311 655 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms