RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 KTN1Q86UP2 1357 aaKnown RBP11.69□□□□□ -0.54
USP54-211ENST00000474929 EVC2Q86UK5 1308 aa11.69□□□□□ -0.54
USP54-211ENST00000474929 PCDH11XQ9BZA7 1347 aa11.69□□□□□ -0.54
USP54-211ENST00000474929 PCDH11YQ9BZA8 1340 aa11.69□□□□□ -0.54
USP54-211ENST00000474929 TMF1P82094 1093 aa11.69□□□□□ -0.54
USP54-211ENST00000474929 SMG6Q86US8 1419 aaKnown RBP11.69□□□□□ -0.54
USP54-211ENST00000474929 GNPATO15228 680 aa11.68□□□□□ -0.54
USP54-211ENST00000474929 ADRA2BP18089 450 aa11.68□□□□□ -0.54
USP54-211ENST00000474929 VEGFBP49765 207 aa11.68□□□□□ -0.54
USP54-211ENST00000474929 GCC1Q96CN9 775 aa11.68□□□□□ -0.54
USP54-211ENST00000474929 MEGF6O75095 1541 aa11.67□□□□□ -0.54
USP54-211ENST00000474929 TMEM88BA6NKF7 163 aa11.67□□□□□ -0.54
USP54-211ENST00000474929 THSD7BQ9C0I4 1608 aa11.67□□□□□ -0.54
USP54-211ENST00000474929 AMIGO3Q86WK7 504 aa11.66□□□□□ -0.54
USP54-211ENST00000474929 KCNA3P22001 575 aa11.65□□□□□ -0.54
USP54-211ENST00000474929 RAPGEF4Q8WZA2 1011 aa11.65□□□□□ -0.54
USP54-211ENST00000474929 IP6K1Q92551 441 aa11.65□□□□□ -0.54
USP54-211ENST00000474929 CD163L1Q9NR16 1453 aa11.64□□□□□ -0.55
USP54-211ENST00000474929 PASKQ96RG2 1323 aa11.64□□□□□ -0.55
USP54-211ENST00000474929 LOC102724428A0A0B4J2F2 783 aa11.64□□□□□ -0.55
USP54-211ENST00000474929 IQCA1LA6NCM1 817 aa11.64□□□□□ -0.55
USP54-211ENST00000474929 RASSF10A6NK89 507 aa11.64□□□□□ -0.55
USP54-211ENST00000474929 SIK1P57059 783 aa11.64□□□□□ -0.55
USP54-211ENST00000474929 MPRIPQ6WCQ1 1025 aa11.64□□□□□ -0.55
USP54-211ENST00000474929 RTCBQ9Y3I0 505 aaKnown RBP11.64□□□□□ -0.55
USP54-211ENST00000474929 MAP2P11137 1827 aaKnown RBP11.63□□□□□ -0.55
USP54-211ENST00000474929 CA12O43570 354 aa11.63□□□□□ -0.55
USP54-211ENST00000474929 TRAPPC3LQ5T215 181 aa11.63□□□□□ -0.55
USP54-211ENST00000474929 LDHDQ86WU2 507 aa11.63□□□□□ -0.55
USP54-211ENST00000474929 TNRC18O15417 2968 aaPredicted RBP11.62□□□□□ -0.55
USP54-211ENST00000474929 LINC00116Q8NCU8 138 aa11.62□□□□□ -0.55
USP54-211ENST00000474929 RTL1A6NKG5 1358 aa11.62□□□□□ -0.55
USP54-211ENST00000474929 ITGB4P16144 1822 aa11.62□□□□□ -0.55
USP54-211ENST00000474929 MAP3K19Q56UN5 1328 aa11.61□□□□□ -0.55
USP54-211ENST00000474929 TATP17735 454 aaPredicted RBP11.61□□□□□ -0.55
USP54-211ENST00000474929 ECE1P42892 770 aa11.61□□□□□ -0.55
USP54-211ENST00000474929 RASSF7Q02833 373 aa11.61□□□□□ -0.55
USP54-211ENST00000474929 DEFB115Q30KQ5 88 aa11.61□□□□□ -0.55
USP54-211ENST00000474929 ZNF831Q5JPB2 1677 aa11.61□□□□□ -0.55
USP54-211ENST00000474929 WDR33Q9C0J8 1336 aaKnown RBP11.6□□□□□ -0.55
USP54-211ENST00000474929 POTECB2RU33 542 aa11.6□□□□□ -0.55
USP54-211ENST00000474929 RFC4P35249 363 aa11.6□□□□□ -0.55
USP54-211ENST00000474929 SMIM5Q71RC9 77 aa11.6□□□□□ -0.55
USP54-211ENST00000474929 LTV1Q96GA3 475 aaPredicted RBP11.6□□□□□ -0.55
USP54-211ENST00000474929 MCOLN1Q9GZU1 580 aa11.6□□□□□ -0.55
USP54-211ENST00000474929 EDC4Q6P2E9 1401 aaKnown RBP11.6□□□□□ -0.55
USP54-211ENST00000474929 SCN4AP35499 1836 aa11.59□□□□□ -0.55
USP54-211ENST00000474929 GYS1P13807 737 aa11.59□□□□□ -0.55
USP54-211ENST00000474929 DLEC1Q9Y238 1755 aa11.59□□□□□ -0.55
USP54-211ENST00000474929 ATP6V1AP38606 617 aa11.58□□□□□ -0.56
USP54-211ENST00000474929 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.58□□□□□ -0.56
USP54-211ENST00000474929 DICER1Q9UPY3 1922 aaKnown RBP11.58□□□□□ -0.56
USP54-211ENST00000474929 CNTNAP4Q9C0A0 1308 aa11.57□□□□□ -0.56
USP54-211ENST00000474929 SBNO2Q9Y2G9 1366 aa11.56□□□□□ -0.56
USP54-211ENST00000474929 HOXC9P31274 260 aa11.56□□□□□ -0.56
USP54-211ENST00000474929 AMPHP49418 695 aa11.56□□□□□ -0.56
USP54-211ENST00000474929 RC3H1Q5TC82 1133 aaKnown RBP11.56□□□□□ -0.56
USP54-211ENST00000474929 HDGFL2Q7Z4V5 671 aaPredicted RBP11.56□□□□□ -0.56
USP54-211ENST00000474929 NME9Q86XW9 330 aa11.56□□□□□ -0.56
USP54-211ENST00000474929 TMOD3Q9NYL9 352 aa11.56□□□□□ -0.56
USP54-211ENST00000474929 ABT1Q9ULW3 272 aaKnown RBP11.56□□□□□ -0.56
USP54-211ENST00000474929 CCDC88AQ3V6T2 1871 aa11.55□□□□□ -0.56
USP54-211ENST00000474929 LTBP1Q14766 1721 aa11.55□□□□□ -0.56
USP54-211ENST00000474929 RGPD2P0DJD1 1756 aa11.55□□□□□ -0.56
USP54-211ENST00000474929 ERFEQ4G0M1 354 aa11.55□□□□□ -0.56
USP54-211ENST00000474929 TTLL6Q8N841 843 aa11.55□□□□□ -0.56
USP54-211ENST00000474929 PIGBQ92521 554 aa11.55□□□□□ -0.56
USP54-211ENST00000474929 ARHGEF1Q92888 912 aaKnown RBP11.55□□□□□ -0.56
USP54-211ENST00000474929 KDRP35968 1356 aa11.54□□□□□ -0.56
USP54-211ENST00000474929 CHRNA5P30532 468 aa11.54□□□□□ -0.56
USP54-211ENST00000474929 ITPK1Q13572 414 aa11.54□□□□□ -0.56
USP54-211ENST00000474929 DGKZQ13574 1117 aa11.54□□□□□ -0.56
USP54-211ENST00000474929 NBPF15Q8N660 670 aa11.54□□□□□ -0.56
USP54-211ENST00000474929 L3MBTL3Q96JM7 780 aaPredicted RBP11.54□□□□□ -0.56
USP54-211ENST00000474929 COL5A3P25940 1745 aaPredicted RBP11.54□□□□□ -0.56
USP54-211ENST00000474929 RPS6KA4O75676 772 aa11.53□□□□□ -0.56
USP54-211ENST00000474929 MAP2K2P36507 400 aa11.53□□□□□ -0.56
USP54-211ENST00000474929 NBPF1Q3BBV0 1214 aa11.53□□□□□ -0.56
USP54-211ENST00000474929 LTBP3Q9NS15 1303 aa11.53□□□□□ -0.56
USP54-211ENST00000474929 NFKBIEO00221 500 aa11.52□□□□□ -0.57
USP54-211ENST00000474929 ITGBL1O95965 494 aaPredicted RBP11.52□□□□□ -0.57
USP54-211ENST00000474929 POTEIP0CG38 1075 aa11.52□□□□□ -0.57
USP54-211ENST00000474929 POTEJP0CG39 1038 aa11.52□□□□□ -0.57
USP54-211ENST00000474929 NKX1-1Q15270 411 aaPredicted RBP11.52□□□□□ -0.57
USP54-211ENST00000474929 PNMA8AQ86V59 439 aaPredicted RBP11.52□□□□□ -0.57
USP54-211ENST00000474929 CAPNS2Q96L46 248 aa11.52□□□□□ -0.57
USP54-211ENST00000474929 TAF1DQ9H5J8 278 aaPredicted RBP11.52□□□□□ -0.57
USP54-211ENST00000474929 PDZRN3Q9UPQ7 1066 aa11.52□□□□□ -0.57
USP54-211ENST00000474929 ADAMTSL1Q8N6G6 1762 aa11.51□□□□□ -0.57
USP54-211ENST00000474929 CYP27B1O15528 508 aa11.51□□□□□ -0.57
USP54-211ENST00000474929 PAXIP1Q6ZW49 1069 aaPredicted RBP11.51□□□□□ -0.57
USP54-211ENST00000474929 GPR101Q96P66 508 aaPredicted RBP11.51□□□□□ -0.57
USP54-211ENST00000474929 ZNF219Q9P2Y4 722 aaPredicted RBP11.51□□□□□ -0.57
USP54-211ENST00000474929 USP42Q9H9J4 1324 aaKnown RBP11.51□□□□□ -0.57
USP54-211ENST00000474929 SOGA3Q5TF21 947 aa11.5□□□□□ -0.57
USP54-211ENST00000474929 NBPF6Q5VWK0 638 aa11.5□□□□□ -0.57
USP54-211ENST00000474929 PIAS4Q8N2W9 510 aaPredicted RBP11.5□□□□□ -0.57
USP54-211ENST00000474929 COG3Q96JB2 828 aa11.5□□□□□ -0.57
USP54-211ENST00000474929 NBPF4Q96M43 638 aa11.5□□□□□ -0.57
USP54-211ENST00000474929 TERF2IPQ9NYB0 399 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms