RNA–Protein interactions for RNA: ENST00000473345.5

MCF2L-223, Transcript of MCF.2 cell line derived transforming sequence like, human

TSL 3

Gene MCF2L, Length 399 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MCF2L-223	ENST00000473345	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.45	□□□□□ -0.26
MCF2L-223	ENST00000473345		A0A0G2JLW4	131 aa		13.44	□□□□□ -0.26
MCF2L-223	ENST00000473345	ATP6V1A	P38606	617 aa		13.44	□□□□□ -0.26
MCF2L-223	ENST00000473345	TMOD3	Q9NYL9	352 aa		13.44	□□□□□ -0.26
MCF2L-223	ENST00000473345	KDM6A	O15550	1401 aa	Predicted RBP	13.44	□□□□□ -0.26
MCF2L-223	ENST00000473345	C10orf71	Q711Q0	1435 aa		13.44	□□□□□ -0.26
MCF2L-223	ENST00000473345	KIF13B	Q9NQT8	1826 aa		13.43	□□□□□ -0.26
MCF2L-223	ENST00000473345	SPG7	Q9UQ90	795 aa		13.43	□□□□□ -0.26
MCF2L-223	ENST00000473345	KCNA3	P22001	575 aa		13.42	□□□□□ -0.26
MCF2L-223	ENST00000473345	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.42	□□□□□ -0.26
MCF2L-223	ENST00000473345	GYS1	P13807	737 aa		13.41	□□□□□ -0.26
MCF2L-223	ENST00000473345	DPEP1	P16444	411 aa		13.41	□□□□□ -0.26
MCF2L-223	ENST00000473345	TNNT2	P45379	298 aa	Predicted RBP	13.41	□□□□□ -0.26
MCF2L-223	ENST00000473345	DNAJC5G	Q8N7S2	189 aa		13.41	□□□□□ -0.26
MCF2L-223	ENST00000473345	ARHGEF1	Q92888	912 aa	Known RBP	13.41	□□□□□ -0.26
MCF2L-223	ENST00000473345	NMRK2	Q9NPI5	230 aa		13.41	□□□□□ -0.26
MCF2L-223	ENST00000473345	COL5A3	P25940	1745 aa	Predicted RBP	13.41	□□□□□ -0.26
MCF2L-223	ENST00000473345	IFNL2	Q8IZJ0	200 aa		13.4	□□□□□ -0.26
MCF2L-223	ENST00000473345	MYH14	Q7Z406	1995 aa	Known RBP	13.4	□□□□□ -0.27
MCF2L-223	ENST00000473345	C4A	P0C0L4	1744 aa		13.39	□□□□□ -0.27
MCF2L-223	ENST00000473345	SLC24A1	O60721	1099 aa		13.39	□□□□□ -0.27
MCF2L-223	ENST00000473345	HTRA3	P83110	453 aa		13.39	□□□□□ -0.27
MCF2L-223	ENST00000473345	AEBP1	Q8IUX7	1158 aa		13.39	□□□□□ -0.27
MCF2L-223	ENST00000473345	SRP68	Q9UHB9	627 aa	Known RBP	13.39	□□□□□ -0.27
MCF2L-223	ENST00000473345	BCS1L	Q9Y276	419 aa		13.39	□□□□□ -0.27
MCF2L-223	ENST00000473345	BRCA1	P38398	1863 aa	Known RBP	13.38	□□□□□ -0.27
MCF2L-223	ENST00000473345	ADAMTS7	Q9UKP4	1686 aa		13.38	□□□□□ -0.27
MCF2L-223	ENST00000473345	DDR1	Q08345	913 aa		13.38	□□□□□ -0.27
MCF2L-223	ENST00000473345	RBM42	Q9BTD8	480 aa	Known RBP	13.38	□□□□□ -0.27
MCF2L-223	ENST00000473345	ZNF831	Q5JPB2	1677 aa		13.37	□□□□□ -0.27
MCF2L-223	ENST00000473345	TRAPPC3L	Q5T215	181 aa		13.37	□□□□□ -0.27
MCF2L-223	ENST00000473345	RTCB	Q9Y3I0	505 aa	Known RBP	13.37	□□□□□ -0.27
MCF2L-223	ENST00000473345	CNTNAP4	Q9C0A0	1308 aa		13.37	□□□□□ -0.27
MCF2L-223	ENST00000473345	RPS6KA4	O75676	772 aa		13.36	□□□□□ -0.27
MCF2L-223	ENST00000473345	TGFB2	P61812	414 aa		13.36	□□□□□ -0.27
MCF2L-223	ENST00000473345	TJP1	Q07157	1748 aa		13.36	□□□□□ -0.27
MCF2L-223	ENST00000473345	ERVV-2	B6SEH9	535 aa		13.35	□□□□□ -0.27
MCF2L-223	ENST00000473345	PRELP	P51888	382 aa		13.35	□□□□□ -0.27
MCF2L-223	ENST00000473345	FKBP8	Q14318	412 aa		13.35	□□□□□ -0.27
MCF2L-223	ENST00000473345	CDCA8	Q53HL2	280 aa		13.35	□□□□□ -0.27
MCF2L-223	ENST00000473345	RC3H1	Q5TC82	1133 aa	Known RBP	13.35	□□□□□ -0.27
MCF2L-223	ENST00000473345	ARHGAP27	Q6ZUM4	889 aa		13.35	□□□□□ -0.27
MCF2L-223	ENST00000473345	PTCD1	O75127	700 aa	Known RBP	13.34	□□□□□ -0.27
MCF2L-223	ENST00000473345	FCHSD2	O94868	740 aa		13.34	□□□□□ -0.27
MCF2L-223	ENST00000473345	CHRNA5	P30532	468 aa		13.34	□□□□□ -0.27
MCF2L-223	ENST00000473345	NLGN1	Q8N2Q7	840 aa		13.34	□□□□□ -0.27
MCF2L-223	ENST00000473345	TOMM70	O94826	608 aa		13.33	□□□□□ -0.28
MCF2L-223	ENST00000473345	CRKL	P46109	303 aa	Known RBP	13.33	□□□□□ -0.28
MCF2L-223	ENST00000473345	C9orf131	Q5VYM1	1079 aa		13.33	□□□□□ -0.28
MCF2L-223	ENST00000473345	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.33	□□□□□ -0.28
MCF2L-223	ENST00000473345	INTS5	Q6P9B9	1019 aa	Known RBP	13.33	□□□□□ -0.28
MCF2L-223	ENST00000473345	DCAF5	Q96JK2	942 aa		13.33	□□□□□ -0.28
MCF2L-223	ENST00000473345	POLR3GL	Q9BT43	218 aa		13.33	□□□□□ -0.28
MCF2L-223	ENST00000473345	KCP	Q6ZWJ8	1503 aa		13.33	□□□□□ -0.28
MCF2L-223	ENST00000473345	NFATC2IP	Q8NCF5	419 aa		13.32	□□□□□ -0.28
MCF2L-223	ENST00000473345	USP42	Q9H9J4	1324 aa	Known RBP	13.32	□□□□□ -0.28
MCF2L-223	ENST00000473345	ADRA2B	P18089	450 aa		13.31	□□□□□ -0.28
MCF2L-223	ENST00000473345	HMGB2	P26583	209 aa	Known RBP	13.31	□□□□□ -0.28
MCF2L-223	ENST00000473345	RFC4	P35249	363 aa		13.31	□□□□□ -0.28
MCF2L-223	ENST00000473345	APLP1	P51693	650 aa		13.31	□□□□□ -0.28
MCF2L-223	ENST00000473345	CABP4	P57796	275 aa		13.31	□□□□□ -0.28
MCF2L-223	ENST00000473345	PANK3	Q9H999	370 aa		13.31	□□□□□ -0.28
MCF2L-223	ENST00000473345	CCDC87	Q9NVE4	849 aa		13.31	□□□□□ -0.28
MCF2L-223	ENST00000473345	PLEKHG2	Q9H7P9	1386 aa		13.31	□□□□□ -0.28
MCF2L-223	ENST00000473345	WDR90	Q96KV7	1748 aa		13.3	□□□□□ -0.28
MCF2L-223	ENST00000473345	POLRMT	O00411	1230 aa	Known RBP	13.3	□□□□□ -0.28
MCF2L-223	ENST00000473345	TM4SF1	P30408	202 aa		13.3	□□□□□ -0.28
MCF2L-223	ENST00000473345	PARP3	Q9Y6F1	533 aa		13.3	□□□□□ -0.28
MCF2L-223	ENST00000473345	ARFGEF1	Q9Y6D6	1849 aa		13.29	□□□□□ -0.28
MCF2L-223	ENST00000473345	RASSF7	Q02833	373 aa		13.29	□□□□□ -0.28
MCF2L-223	ENST00000473345	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.29	□□□□□ -0.28
MCF2L-223	ENST00000473345	DNAJC10	Q8IXB1	793 aa		13.29	□□□□□ -0.28
MCF2L-223	ENST00000473345	BCL2L12	Q9HB09	334 aa		13.29	□□□□□ -0.28
MCF2L-223	ENST00000473345	LGR6	Q9HBX8	967 aa		13.29	□□□□□ -0.28
MCF2L-223	ENST00000473345	IL13	P35225	146 aa		13.28	□□□□□ -0.28
MCF2L-223	ENST00000473345	MTHFS	P49914	203 aa		13.28	□□□□□ -0.28
MCF2L-223	ENST00000473345	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.28	□□□□□ -0.28
MCF2L-223	ENST00000473345	HSPA5	P11021	654 aa	Known RBP	13.27	□□□□□ -0.29
MCF2L-223	ENST00000473345	SLC39A6	Q13433	755 aa		13.27	□□□□□ -0.29
MCF2L-223	ENST00000473345	USPL1	Q5W0Q7	1092 aa		13.27	□□□□□ -0.29
MCF2L-223	ENST00000473345	SULT6B1	Q6IMI4	303 aa		13.27	□□□□□ -0.29
MCF2L-223	ENST00000473345	RBM46	Q8TBY0	533 aa	Known RBP	13.27	□□□□□ -0.29
MCF2L-223	ENST00000473345	RRAGC	Q9HB90	399 aa		13.27	□□□□□ -0.29
MCF2L-223	ENST00000473345	RNF181	Q9P0P0	153 aa		13.27	□□□□□ -0.29
MCF2L-223	ENST00000473345	PIM2	Q9P1W9	311 aa		13.27	□□□□□ -0.29
MCF2L-223	ENST00000473345	SOS1	Q07889	1333 aa	Predicted RBP	13.27	□□□□□ -0.29
MCF2L-223	ENST00000473345	CARMIL3	Q8ND23	1372 aa		13.27	□□□□□ -0.29
MCF2L-223	ENST00000473345	HSP90AB1	P08238	724 aa	Known RBP	13.26	□□□□□ -0.29
MCF2L-223	ENST00000473345	SCN11A	Q9UI33	1791 aa		13.26	□□□□□ -0.29
MCF2L-223	ENST00000473345	MRC1	P22897	1456 aa		13.25	□□□□□ -0.29
MCF2L-223	ENST00000473345	CYP19A1	P11511	503 aa	Predicted RBP	13.25	□□□□□ -0.29
MCF2L-223	ENST00000473345	NFIX	Q14938	502 aa		13.25	□□□□□ -0.29
MCF2L-223	ENST00000473345	AMOT	Q4VCS5	1084 aa		13.25	□□□□□ -0.29
MCF2L-223	ENST00000473345	DALRD3	Q5D0E6	543 aa	Known RBP	13.25	□□□□□ -0.29
MCF2L-223	ENST00000473345	JMY	Q8N9B5	988 aa		13.25	□□□□□ -0.29
MCF2L-223	ENST00000473345	KLRG1	Q96E93	195 aa		13.25	□□□□□ -0.29
MCF2L-223	ENST00000473345	ZBTB1	Q9Y2K1	713 aa		13.25	□□□□□ -0.29
MCF2L-223	ENST00000473345	SBF1	O95248	1867 aa		13.25	□□□□□ -0.29
MCF2L-223	ENST00000473345	NRXN2	Q9P2S2	1712 aa		13.25	□□□□□ -0.29
MCF2L-223	ENST00000473345	AFDN	P55196	1824 aa	Known RBP	13.23	□□□□□ -0.29

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