RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 LINC00116Q8NCU8 138 aa12.24□□□□□ -0.45
USF1-204ENST00000472217 AK7Q96M32 723 aa12.24□□□□□ -0.45
USF1-204ENST00000472217 ATG3Q9NT62 314 aa12.24□□□□□ -0.45
USF1-204ENST00000472217 SCN11AQ9UI33 1791 aa12.23□□□□□ -0.45
USF1-204ENST00000472217 ITPK1Q13572 414 aa12.23□□□□□ -0.45
USF1-204ENST00000472217 C1orf141Q5JVX7 400 aa12.23□□□□□ -0.45
USF1-204ENST00000472217 MSL1Q68DK7 614 aa12.23□□□□□ -0.45
USF1-204ENST00000472217 AMIGO3Q86WK7 504 aa12.23□□□□□ -0.45
USF1-204ENST00000472217 FLAD1Q8NFF5 587 aa12.23□□□□□ -0.45
USF1-204ENST00000472217 DIAPH1O60610 1272 aaKnown RBP12.22□□□□□ -0.45
USF1-204ENST00000472217 HMOX1P09601 288 aa12.22□□□□□ -0.45
USF1-204ENST00000472217 ATP6V1AP38606 617 aa12.22□□□□□ -0.45
USF1-204ENST00000472217 CABP4P57796 275 aa12.22□□□□□ -0.45
USF1-204ENST00000472217 SMIM5Q71RC9 77 aa12.22□□□□□ -0.45
USF1-204ENST00000472217 KLHL34Q8N239 644 aa12.22□□□□□ -0.45
USF1-204ENST00000472217 COL5A3P25940 1745 aaPredicted RBP12.22□□□□□ -0.45
USF1-204ENST00000472217 PHF14O94880 888 aa12.21□□□□□ -0.45
USF1-204ENST00000472217 SLC4A9Q96Q91 983 aa12.21□□□□□ -0.45
USF1-204ENST00000472217 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.2□□□□□ -0.46
USF1-204ENST00000472217 GNPATO15228 680 aa12.2□□□□□ -0.46
USF1-204ENST00000472217 YY1P25490 414 aa12.2□□□□□ -0.46
USF1-204ENST00000472217 SSFA2P28290 1259 aa12.2□□□□□ -0.46
USF1-204ENST00000472217 RBM42Q9BTD8 480 aaKnown RBP12.2□□□□□ -0.46
USF1-204ENST00000472217 VIRMAQ69YN4 1812 aaKnown RBP12.2□□□□□ -0.46
USF1-204ENST00000472217 ADAMTS7Q9UKP4 1686 aa12.19□□□□□ -0.46
USF1-204ENST00000472217 CICQ96RK0 1608 aaPredicted RBP12.19□□□□□ -0.46
USF1-204ENST00000472217 AKAP4Q5JQC9 854 aa12.19□□□□□ -0.46
USF1-204ENST00000472217 NFATC2IPQ8NCF5 419 aa12.19□□□□□ -0.46
USF1-204ENST00000472217 TJP1Q07157 1748 aa12.19□□□□□ -0.46
USF1-204ENST00000472217 MRC1P22897 1456 aa12.19□□□□□ -0.46
USF1-204ENST00000472217 NLGN2Q8NFZ4 835 aa12.18□□□□□ -0.46
USF1-204ENST00000472217 U2SURPO15042 1029 aaKnown RBP12.17□□□□□ -0.46
USF1-204ENST00000472217 PTCD1O75127 700 aaKnown RBP12.17□□□□□ -0.46
USF1-204ENST00000472217 MTHFSDQ2M296 383 aaKnown RBP12.17□□□□□ -0.46
USF1-204ENST00000472217 LGR6Q9HBX8 967 aa12.17□□□□□ -0.46
USF1-204ENST00000472217 CNTNAP4Q9C0A0 1308 aa12.16□□□□□ -0.46
USF1-204ENST00000472217 SLC52A2Q9HAB3 445 aa12.16□□□□□ -0.46
USF1-204ENST00000472217 C4AP0C0L4 1744 aa12.16□□□□□ -0.46
USF1-204ENST00000472217 RNMTO43148 476 aaKnown RBP12.15□□□□□ -0.46
USF1-204ENST00000472217 GPR162Q16538 588 aa12.15□□□□□ -0.46
USF1-204ENST00000472217 RC3H1Q5TC82 1133 aaKnown RBP12.15□□□□□ -0.46
USF1-204ENST00000472217 RTCBQ9Y3I0 505 aaKnown RBP12.15□□□□□ -0.46
USF1-204ENST00000472217 MYH14Q7Z406 1995 aaKnown RBP12.14□□□□□ -0.47
USF1-204ENST00000472217 PPP2R1AP30153 589 aa12.14□□□□□ -0.47
USF1-204ENST00000472217 PELP1Q8IZL8 1130 aaKnown RBP12.14□□□□□ -0.47
USF1-204ENST00000472217 CFAP53Q96M91 514 aa12.14□□□□□ -0.47
USF1-204ENST00000472217 KCPQ6ZWJ8 1503 aa12.14□□□□□ -0.47
USF1-204ENST00000472217 UBR2Q8IWV8 1755 aa12.13□□□□□ -0.47
USF1-204ENST00000472217 RPS6KA4O75676 772 aa12.13□□□□□ -0.47
USF1-204ENST00000472217 CRKLP46109 303 aaKnown RBP12.13□□□□□ -0.47
USF1-204ENST00000472217 TRAPPC3LQ5T215 181 aa12.13□□□□□ -0.47
USF1-204ENST00000472217 ARHGEF1Q92888 912 aaKnown RBP12.13□□□□□ -0.47
USF1-204ENST00000472217 CD2APQ9Y5K6 639 aa12.13□□□□□ -0.47
USF1-204ENST00000472217 CHD4Q14839 1912 aa12.13□□□□□ -0.47
USF1-204ENST00000472217 SLC39A6Q13433 755 aa12.12□□□□□ -0.47
USF1-204ENST00000472217 SIPA1L3O60292 1781 aaPredicted RBP12.12□□□□□ -0.47
USF1-204ENST00000472217 YBX3P16989 372 aaKnown RBP eCLIP12.11□□□□□ -0.471e-6■□□□□ 8.7
USF1-204ENST00000472217 PRKAR2BP31323 418 aa12.11□□□□□ -0.47
USF1-204ENST00000472217 RSPH6AQ9H0K4 717 aa12.11□□□□□ -0.47
USF1-204ENST00000472217 GNAT3A8MTJ3 354 aa12.1□□□□□ -0.47
USF1-204ENST00000472217 MMP10P09238 476 aa12.1□□□□□ -0.47
USF1-204ENST00000472217 GYS1P13807 737 aa12.1□□□□□ -0.47
USF1-204ENST00000472217 RFC4P35249 363 aa12.1□□□□□ -0.47
USF1-204ENST00000472217 DNAJC10Q8IXB1 793 aa12.1□□□□□ -0.47
USF1-204ENST00000472217 IL17REQ8NFR9 667 aa12.1□□□□□ -0.47
USF1-204ENST00000472217 GAS2L2Q8NHY3 880 aa12.1□□□□□ -0.47
USF1-204ENST00000472217 PHACTR3Q96KR7 559 aa12.1□□□□□ -0.47
USF1-204ENST00000472217 KIF13BQ9NQT8 1826 aa12.09□□□□□ -0.47
USF1-204ENST00000472217 KIAA1551Q9HCM1 1747 aa12.09□□□□□ -0.47
USF1-204ENST00000472217 INTS5Q6P9B9 1019 aaKnown RBP12.09□□□□□ -0.47
USF1-204ENST00000472217 NLGN1Q8N2Q7 840 aa12.09□□□□□ -0.47
USF1-204ENST00000472217 CCDC87Q9NVE4 849 aa12.09□□□□□ -0.47
USF1-204ENST00000472217 NUDCQ9Y266 331 aa12.09□□□□□ -0.47
USF1-204ENST00000472217 CEMIPQ8WUJ3 1361 aa12.08□□□□□ -0.48
USF1-204ENST00000472217 U2AF1L5P0DN76 240 aaPredicted RBP12.08□□□□□ -0.48
USF1-204ENST00000472217 CYP19A1P11511 503 aaPredicted RBP12.08□□□□□ -0.48
USF1-204ENST00000472217 U2AF1Q01081 240 aaKnown RBP eCLIP12.08□□□□□ -0.48
USF1-204ENST00000472217 TEFQ10587 303 aa12.08□□□□□ -0.48
USF1-204ENST00000472217 ZNF784Q8NCA9 323 aaPredicted RBP12.08□□□□□ -0.48
USF1-204ENST00000472217 SRP68Q9UHB9 627 aaKnown RBP12.08□□□□□ -0.48
USF1-204ENST00000472217 GRIN3BO60391 1043 aa12.07□□□□□ -0.48
USF1-204ENST00000472217 C10orf71Q711Q0 1435 aa12.07□□□□□ -0.48
USF1-204ENST00000472217 TTC5Q8N0Z6 440 aa12.07□□□□□ -0.48
USF1-204ENST00000472217 VSIG10Q8N0Z9 540 aa12.07□□□□□ -0.48
USF1-204ENST00000472217 PXDNLA1KZ92 1463 aa12.07□□□□□ -0.48
USF1-204ENST00000472217 SOS1Q07889 1333 aaPredicted RBP12.07□□□□□ -0.48
USF1-204ENST00000472217 USP42Q9H9J4 1324 aaKnown RBP12.07□□□□□ -0.48
USF1-204ENST00000472217 N4BP2Q86UW6 1770 aaPredicted RBP12.06□□□□□ -0.48
USF1-204ENST00000472217 FCHSD2O94868 740 aa12.06□□□□□ -0.48
USF1-204ENST00000472217 ZBTB1Q9Y2K1 713 aa12.06□□□□□ -0.48
USF1-204ENST00000472217 COL15A1P39059 1388 aa12.05□□□□□ -0.48
USF1-204ENST00000472217 FKBP8Q14318 412 aa12.05□□□□□ -0.48
USF1-204ENST00000472217 ZNF790Q6PG37 636 aa12.05□□□□□ -0.48
USF1-204ENST00000472217 ZNF496Q96IT1 587 aaPredicted RBP12.05□□□□□ -0.48
USF1-204ENST00000472217 WWC3Q9ULE0 1092 aa12.05□□□□□ -0.48
USF1-204ENST00000472217 PARP3Q9Y6F1 533 aa12.05□□□□□ -0.48
USF1-204ENST00000472217 HEG1Q9ULI3 1381 aa12.05□□□□□ -0.48
USF1-204ENST00000472217 CANXP27824 592 aaKnown RBP12.03□□□□□ -0.48
USF1-204ENST00000472217 DDR1Q08345 913 aa12.03□□□□□ -0.48
USF1-204ENST00000472217 USPL1Q5W0Q7 1092 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms