RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 CICQ96RK0 1608 aaPredicted RBP9.66□□□□□ -0.86
HDAC1-204ENST00000471488 KCPQ6ZWJ8 1503 aa9.66□□□□□ -0.86
HDAC1-204ENST00000471488 TOGARAM1Q9Y4F4 1720 aa9.65□□□□□ -0.86
HDAC1-204ENST00000471488 HSPA1AP0DMV8 641 aaKnown RBP9.65□□□□□ -0.86
HDAC1-204ENST00000471488 HSPA1BP0DMV9 641 aaKnown RBP9.65□□□□□ -0.86
HDAC1-204ENST00000471488 RFC4P35249 363 aa9.65□□□□□ -0.86
HDAC1-204ENST00000471488 TGFB2P61812 414 aa9.65□□□□□ -0.86
HDAC1-204ENST00000471488 ITPK1Q13572 414 aa9.65□□□□□ -0.86
HDAC1-204ENST00000471488 UBR3Q6ZT12 1888 aa9.65□□□□□ -0.86
HDAC1-204ENST00000471488 RTL1A6NKG5 1358 aa9.64□□□□□ -0.87
HDAC1-204ENST00000471488 FSTL1Q12841 308 aa9.64□□□□□ -0.87
HDAC1-204ENST00000471488 SPG7Q9UQ90 795 aa9.64□□□□□ -0.87
HDAC1-204ENST00000471488 ITGB4P16144 1822 aa9.63□□□□□ -0.87
HDAC1-204ENST00000471488 DALRD3Q5D0E6 543 aaKnown RBP9.63□□□□□ -0.87
HDAC1-204ENST00000471488 NLGN1Q8N2Q7 840 aa9.63□□□□□ -0.87
HDAC1-204ENST00000471488 JMYQ8N9B5 988 aa9.63□□□□□ -0.87
HDAC1-204ENST00000471488 SMC1BQ8NDV3 1235 aa9.63□□□□□ -0.87
HDAC1-204ENST00000471488 PIM2Q9P1W9 311 aa9.63□□□□□ -0.87
HDAC1-204ENST00000471488 PLEKHG2Q9H7P9 1386 aa9.63□□□□□ -0.87
HDAC1-204ENST00000471488 FYB1O15117 783 aa9.61□□□□□ -0.87
HDAC1-204ENST00000471488 CHRNA5P30532 468 aa9.61□□□□□ -0.87
HDAC1-204ENST00000471488 RASSF7Q02833 373 aa9.61□□□□□ -0.87
HDAC1-204ENST00000471488 ARHGEF1Q92888 912 aaKnown RBP9.61□□□□□ -0.87
HDAC1-204ENST00000471488 EMILIN1Q9Y6C2 1016 aa9.61□□□□□ -0.87
HDAC1-204ENST00000471488 INSRP06213 1382 aa9.61□□□□□ -0.87
HDAC1-204ENST00000471488 FLT4P35916 1363 aa9.61□□□□□ -0.87
HDAC1-204ENST00000471488 C10orf71Q711Q0 1435 aa9.6□□□□□ -0.87
HDAC1-204ENST00000471488 ST20-MTHFSA0A0A6YYL1 179 aa9.6□□□□□ -0.87
HDAC1-204ENST00000471488 ATG3Q9NT62 314 aa9.6□□□□□ -0.87
HDAC1-204ENST00000471488 PTCD1O75127 700 aaKnown RBP9.59□□□□□ -0.87
HDAC1-204ENST00000471488 GYS1P13807 737 aa9.59□□□□□ -0.87
HDAC1-204ENST00000471488 IFNL2Q8IZJ0 200 aa9.59□□□□□ -0.87
HDAC1-204ENST00000471488 SRP68Q9UHB9 627 aaKnown RBP9.59□□□□□ -0.87
HDAC1-204ENST00000471488 PKD1L3Q7Z443 1732 aa9.59□□□□□ -0.87
HDAC1-204ENST00000471488 KCNA3P22001 575 aa9.58□□□□□ -0.88
HDAC1-204ENST00000471488 TNNT2P45379 298 aaPredicted RBP9.58□□□□□ -0.88
HDAC1-204ENST00000471488 ZNF219Q9P2Y4 722 aaPredicted RBP9.58□□□□□ -0.88
HDAC1-204ENST00000471488 MKRN1Q9UHC7 482 aaKnown RBP9.58□□□□□ -0.88
HDAC1-204ENST00000471488 C4AP0C0L4 1744 aa9.58□□□□□ -0.88
HDAC1-204ENST00000471488 TONSLQ96HA7 1378 aa9.58□□□□□ -0.88
HDAC1-204ENST00000471488 KIAA1551Q9HCM1 1747 aa9.57□□□□□ -0.88
HDAC1-204ENST00000471488 VEGFAP15692 232 aaPredicted RBP9.57□□□□□ -0.88
HDAC1-204ENST00000471488 PHKG2P15735 406 aa9.57□□□□□ -0.88
HDAC1-204ENST00000471488 DCAF5Q96JK2 942 aa9.57□□□□□ -0.88
HDAC1-204ENST00000471488 PCNTO95613 3336 aa9.57□□□□□ -0.88
HDAC1-204ENST00000471488 KIF13BQ9NQT8 1826 aa9.56□□□□□ -0.88
HDAC1-204ENST00000471488 TNRC6CQ9HCJ0 1690 aaKnown RBP9.56□□□□□ -0.88
HDAC1-204ENST00000471488 RPS6KA4O75676 772 aa9.56□□□□□ -0.88
HDAC1-204ENST00000471488 CABP4P57796 275 aa9.56□□□□□ -0.88
HDAC1-204ENST00000471488 FKBP8Q14318 412 aa9.56□□□□□ -0.88
HDAC1-204ENST00000471488 NKX1-1Q15270 411 aaPredicted RBP9.56□□□□□ -0.88
HDAC1-204ENST00000471488 PUS7Q96PZ0 661 aaKnown RBP9.56□□□□□ -0.88
HDAC1-204ENST00000471488 POLR3GLQ9BT43 218 aa9.56□□□□□ -0.88
HDAC1-204ENST00000471488 MAP2P11137 1827 aaKnown RBP9.56□□□□□ -0.88
HDAC1-204ENST00000471488 ZPR1O75312 459 aa9.55□□□□□ -0.88
HDAC1-204ENST00000471488 ADRA2BP18089 450 aa9.55□□□□□ -0.88
HDAC1-204ENST00000471488 DDR1Q08345 913 aa9.55□□□□□ -0.88
HDAC1-204ENST00000471488 SLC4A9Q96Q91 983 aa9.55□□□□□ -0.88
HDAC1-204ENST00000471488 EYA1Q99502 592 aa9.55□□□□□ -0.88
HDAC1-204ENST00000471488 KIF20BQ96Q89 1820 aa9.54□□□□□ -0.88
HDAC1-204ENST00000471488 LMNB1P20700 586 aa9.54□□□□□ -0.88
HDAC1-204ENST00000471488 CRKLP46109 303 aaKnown RBP9.54□□□□□ -0.88
HDAC1-204ENST00000471488 AIDAQ96BJ3 306 aa9.54□□□□□ -0.88
HDAC1-204ENST00000471488 TESK2Q96S53 571 aa9.54□□□□□ -0.88
HDAC1-204ENST00000471488 ARFGEF1Q9Y6D6 1849 aa9.54□□□□□ -0.88
HDAC1-204ENST00000471488 CNTNAP4Q9C0A0 1308 aa9.54□□□□□ -0.88
HDAC1-204ENST00000471488 GLTPD2A6NH11 291 aa9.53□□□□□ -0.88
HDAC1-204ENST00000471488 RC3H1Q5TC82 1133 aaKnown RBP9.53□□□□□ -0.88
HDAC1-204ENST00000471488 USPL1Q5W0Q7 1092 aa9.53□□□□□ -0.88
HDAC1-204ENST00000471488 DPY19L2Q6NUT2 758 aa9.53□□□□□ -0.88
HDAC1-204ENST00000471488 ZNF530Q6P9A1 599 aaPredicted RBP9.53□□□□□ -0.88
HDAC1-204ENST00000471488 BRCA1P38398 1863 aaKnown RBP9.53□□□□□ -0.88
HDAC1-204ENST00000471488 USP42Q9H9J4 1324 aaKnown RBP9.53□□□□□ -0.88
HDAC1-204ENST00000471488 FOXN1O15353 648 aa9.52□□□□□ -0.89
HDAC1-204ENST00000471488 SLC24A1O60721 1099 aa9.52□□□□□ -0.89
HDAC1-204ENST00000471488 C1orf141Q5JVX7 400 aa9.52□□□□□ -0.89
HDAC1-204ENST00000471488 BICDL1Q6ZP65 573 aa9.52□□□□□ -0.89
HDAC1-204ENST00000471488 C2CD5Q86YS7 1000 aa9.52□□□□□ -0.89
HDAC1-204ENST00000471488 ZNF622Q969S3 477 aaKnown RBP eCLIP9.52□□□□□ -0.892e-15■□□□□ 8.7
HDAC1-204ENST00000471488 KDRP35968 1356 aa9.51□□□□□ -0.89
HDAC1-204ENST00000471488 ERVV-2B6SEH9 535 aa9.51□□□□□ -0.89
HDAC1-204ENST00000471488 POLRMTO00411 1230 aaKnown RBP9.51□□□□□ -0.89
HDAC1-204ENST00000471488 NPHP1O15259 732 aa9.51□□□□□ -0.89
HDAC1-204ENST00000471488 HSP90AB1P08238 724 aaKnown RBP9.51□□□□□ -0.89
HDAC1-204ENST00000471488 MTHFSP49914 203 aa9.51□□□□□ -0.89
HDAC1-204ENST00000471488 PLEKHO1Q53GL0 409 aaPredicted RBP9.51□□□□□ -0.89
HDAC1-204ENST00000471488 CFAP44Q96MT7 982 aa9.51□□□□□ -0.89
HDAC1-204ENST00000471488 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.51□□□□□ -0.892e-7■■□□□ 14.1
HDAC1-204ENST00000471488 KIF24Q5T7B8 1368 aa9.5□□□□□ -0.89
HDAC1-204ENST00000471488 H0YIN7 160 aa9.5□□□□□ -0.89
HDAC1-204ENST00000471488 EIF4A2Q14240 407 aaKnown RBP9.5□□□□□ -0.89
HDAC1-204ENST00000471488 FAM161AQ3B820 660 aa9.5□□□□□ -0.89
HDAC1-204ENST00000471488 ERFEQ4G0M1 354 aa9.5□□□□□ -0.89
HDAC1-204ENST00000471488 TTLL6Q8N841 843 aa9.5□□□□□ -0.89
HDAC1-204ENST00000471488 NFATC2IPQ8NCF5 419 aa9.5□□□□□ -0.89
HDAC1-204ENST00000471488 ZNF330Q9Y3S2 320 aaPredicted RBP9.5□□□□□ -0.89
HDAC1-204ENST00000471488 SBF1O95248 1867 aa9.5□□□□□ -0.89
HDAC1-204ENST00000471488 WASHC2AQ641Q2 1341 aa9.5□□□□□ -0.89
HDAC1-204ENST00000471488 TIAM2Q8IVF5 1701 aa9.49□□□□□ -0.89
HDAC1-204ENST00000471488 C21orf2O43822 256 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms