RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 ERVH48-1M5A8F1 160 aa9.59□□□□□ -0.87
CKS1B-204ENST00000471245 MYCP01106 439 aaPredicted RBP9.59□□□□□ -0.87
CKS1B-204ENST00000471245 PSME1Q06323 249 aa9.59□□□□□ -0.87
CKS1B-204ENST00000471245 PPP1R26Q5T8A7 1209 aaPredicted RBP9.59□□□□□ -0.87
CKS1B-204ENST00000471245 MTMR7Q9Y216 660 aa9.59□□□□□ -0.87
CKS1B-204ENST00000471245 M0R2N6 131 aa9.58□□□□□ -0.88
CKS1B-204ENST00000471245 TIMP2P16035 220 aa9.56□□□□□ -0.88
CKS1B-204ENST00000471245 WDR4P57081 412 aaKnown RBP9.56□□□□□ -0.88
CKS1B-204ENST00000471245 ERVK-9P63128 1117 aa9.56□□□□□ -0.88
CKS1B-204ENST00000471245 OCLNQ16625 522 aa9.56□□□□□ -0.88
CKS1B-204ENST00000471245 CXXC1Q9P0U4 656 aaPredicted RBP9.56□□□□□ -0.88
CKS1B-204ENST00000471245 SFI1A8K8P3 1242 aa9.55□□□□□ -0.88
CKS1B-204ENST00000471245 RAB15P59190 212 aa9.55□□□□□ -0.88
CKS1B-204ENST00000471245 MYT1Q01538 1121 aa9.55□□□□□ -0.88
CKS1B-204ENST00000471245 ZNF787Q6DD87 383 aa9.55□□□□□ -0.88
CKS1B-204ENST00000471245 HMGXB3Q12766 1538 aa9.55□□□□□ -0.88
CKS1B-204ENST00000471245 ATAD2BQ9ULI0 1458 aa9.54□□□□□ -0.88
CKS1B-204ENST00000471245 CAPN5O15484 640 aaPredicted RBP9.54□□□□□ -0.88
CKS1B-204ENST00000471245 LILRA1O75019 489 aa9.54□□□□□ -0.88
CKS1B-204ENST00000471245 ZIC2O95409 532 aaPredicted RBP9.54□□□□□ -0.88
CKS1B-204ENST00000471245 CC2D2BQ6DHV5 1058 aa9.54□□□□□ -0.88
CKS1B-204ENST00000471245 Q6ZVU0 165 aa9.54□□□□□ -0.88
CKS1B-204ENST00000471245 TAS1R3Q7RTX0 852 aa9.54□□□□□ -0.88
CKS1B-204ENST00000471245 ITPKCQ96DU7 683 aa9.54□□□□□ -0.88
CKS1B-204ENST00000471245 KIF21AQ7Z4S6 1674 aa9.53□□□□□ -0.88
CKS1B-204ENST00000471245 AXIN1O15169 862 aa9.53□□□□□ -0.88
CKS1B-204ENST00000471245 PRMT3O60678 531 aa9.53□□□□□ -0.88
CKS1B-204ENST00000471245 SCTRP47872 440 aa9.53□□□□□ -0.88
CKS1B-204ENST00000471245 SOWAHDA6NJG2 315 aa9.52□□□□□ -0.89
CKS1B-204ENST00000471245 WASLO00401 505 aaPredicted RBP9.52□□□□□ -0.89
CKS1B-204ENST00000471245 ZNF784Q8NCA9 323 aaPredicted RBP9.52□□□□□ -0.89
CKS1B-204ENST00000471245 ESF1Q9H501 851 aaKnown RBP9.52□□□□□ -0.89
CKS1B-204ENST00000471245 AAASQ9NRG9 546 aa9.52□□□□□ -0.89
CKS1B-204ENST00000471245 SMARCA2P51531 1590 aa9.51□□□□□ -0.89
CKS1B-204ENST00000471245 WEE1P30291 646 aa9.51□□□□□ -0.89
CKS1B-204ENST00000471245 TMPRSS4Q9NRS4 437 aa9.51□□□□□ -0.89
CKS1B-204ENST00000471245 EGFL7Q9UHF1 273 aa9.51□□□□□ -0.89
CKS1B-204ENST00000471245 SMARCA4P51532 1647 aa9.5□□□□□ -0.89
CKS1B-204ENST00000471245 SERPINB4P48594 390 aa9.5□□□□□ -0.89
CKS1B-204ENST00000471245 PRIMPOLQ96LW4 560 aa9.5□□□□□ -0.89
CKS1B-204ENST00000471245 OSBPL3Q9H4L5 887 aa9.5□□□□□ -0.89
CKS1B-204ENST00000471245 ZFAND3Q9H8U3 227 aa9.5□□□□□ -0.89
CKS1B-204ENST00000471245 ZNF358Q9NW07 568 aa9.5□□□□□ -0.89
CKS1B-204ENST00000471245 AMOTL2Q9Y2J4 779 aa9.5□□□□□ -0.89
CKS1B-204ENST00000471245 FOXD4L5Q5VV16 416 aaPredicted RBP9.49□□□□□ -0.89
CKS1B-204ENST00000471245 MEIOBQ8N635 442 aa9.49□□□□□ -0.89
CKS1B-204ENST00000471245 TSEN2Q8NCE0 465 aaKnown RBP9.49□□□□□ -0.89
CKS1B-204ENST00000471245 FOXD4L4Q8WXT5 416 aaPredicted RBP9.49□□□□□ -0.89
CKS1B-204ENST00000471245 HINFPQ9BQA5 517 aa9.49□□□□□ -0.89
CKS1B-204ENST00000471245 LAMC3Q9Y6N6 1575 aa9.49□□□□□ -0.89
CKS1B-204ENST00000471245 TMEM229AB2RXF0 380 aa9.48□□□□□ -0.89
CKS1B-204ENST00000471245 ADD1P35611 737 aaKnown RBP9.48□□□□□ -0.89
CKS1B-204ENST00000471245 SCNN1DP51172 638 aa9.48□□□□□ -0.89
CKS1B-204ENST00000471245 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.48□□□□□ -0.89
CKS1B-204ENST00000471245 ZNF775Q96BV0 537 aaPredicted RBP9.48□□□□□ -0.89
CKS1B-204ENST00000471245 TSEN34Q9BSV6 310 aaKnown RBP9.48□□□□□ -0.89
CKS1B-204ENST00000471245 BACH1O14867 736 aa9.47□□□□□ -0.89
CKS1B-204ENST00000471245 ADH1AP07327 375 aa9.47□□□□□ -0.89
CKS1B-204ENST00000471245 GDF10P55107 478 aa9.47□□□□□ -0.89
CKS1B-204ENST00000471245 CYP2U1Q7Z449 544 aa9.47□□□□□ -0.89
CKS1B-204ENST00000471245 COL26A1Q96A83 441 aa9.47□□□□□ -0.89
CKS1B-204ENST00000471245 CYLDQ9NQC7 956 aa9.47□□□□□ -0.89
CKS1B-204ENST00000471245 PTCD1O75127 700 aaKnown RBP9.46□□□□□ -0.9
CKS1B-204ENST00000471245 ERCC3P19447 782 aa9.46□□□□□ -0.9
CKS1B-204ENST00000471245 IGFBP4P22692 258 aa9.46□□□□□ -0.9
CKS1B-204ENST00000471245 FOXO3O43524 673 aa9.45□□□□□ -0.9
CKS1B-204ENST00000471245 UPP2O95045 317 aa9.45□□□□□ -0.9
CKS1B-204ENST00000471245 GNRH1P01148 92 aa9.45□□□□□ -0.9
CKS1B-204ENST00000471245 SCNN1AP37088 669 aa9.45□□□□□ -0.9
CKS1B-204ENST00000471245 CBLBQ13191 982 aa9.45□□□□□ -0.9
CKS1B-204ENST00000471245 INHAP05111 366 aa9.44□□□□□ -0.9
CKS1B-204ENST00000471245 FKBP5Q13451 457 aaPredicted RBP9.44□□□□□ -0.9
CKS1B-204ENST00000471245 MRPL14Q6P1L8 145 aaKnown RBP9.44□□□□□ -0.9
CKS1B-204ENST00000471245 KDF1Q8NAX2 398 aaPredicted RBP9.44□□□□□ -0.9
CKS1B-204ENST00000471245 BAZ1BQ9UIG0 1483 aaKnown RBP9.43□□□□□ -0.9
CKS1B-204ENST00000471245 ST8SIA5O15466 376 aa9.43□□□□□ -0.9
CKS1B-204ENST00000471245 PTGIRP43119 386 aa9.43□□□□□ -0.9
CKS1B-204ENST00000471245 EPHA4P54764 986 aa9.43□□□□□ -0.9
CKS1B-204ENST00000471245 SCARF1Q14162 830 aa9.43□□□□□ -0.9
CKS1B-204ENST00000471245 ESCO1Q5FWF5 840 aa9.43□□□□□ -0.9
CKS1B-204ENST00000471245 GAS2L2Q8NHY3 880 aa9.43□□□□□ -0.9
CKS1B-204ENST00000471245 SLC4A9Q96Q91 983 aa9.43□□□□□ -0.9
CKS1B-204ENST00000471245 ETNK1Q9HBU6 452 aa9.43□□□□□ -0.9
CKS1B-204ENST00000471245 ATP13A2Q9NQ11 1180 aa9.43□□□□□ -0.9
CKS1B-204ENST00000471245 SPINT1O43278 529 aa9.42□□□□□ -0.9
CKS1B-204ENST00000471245 ICMTO60725 284 aa9.42□□□□□ -0.9
CKS1B-204ENST00000471245 DNAJC14Q6Y2X3 702 aaPredicted RBP9.42□□□□□ -0.9
CKS1B-204ENST00000471245 TRIM46Q7Z4K8 759 aa9.42□□□□□ -0.9
CKS1B-204ENST00000471245 LINC00528Q8N1L1 170 aa9.42□□□□□ -0.9
CKS1B-204ENST00000471245 LGR5O75473 907 aa9.41□□□□□ -0.9
CKS1B-204ENST00000471245 ABL1P00519 1130 aa9.41□□□□□ -0.9
CKS1B-204ENST00000471245 SF3B2Q13435 895 aaKnown RBP9.41□□□□□ -0.9
CKS1B-204ENST00000471245 SENP2Q9HC62 589 aa9.41□□□□□ -0.9
CKS1B-204ENST00000471245 PEG3Q9GZU2 1588 aa9.41□□□□□ -0.9
CKS1B-204ENST00000471245 BAZ1AQ9NRL2 1556 aaPredicted RBP9.41□□□□□ -0.9
CKS1B-204ENST00000471245 H3BRB1 525 aa9.4□□□□□ -0.9
CKS1B-204ENST00000471245 C21orf2O43822 256 aa9.4□□□□□ -0.9
CKS1B-204ENST00000471245 ZNF211Q13398 564 aaPredicted RBP9.4□□□□□ -0.9
CKS1B-204ENST00000471245 GLYCTKQ8IVS8 523 aa9.4□□□□□ -0.9
CKS1B-204ENST00000471245 GTF3C2Q8WUA4 911 aaPredicted RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms