RNA–Protein interactions for RNA: ENST00000467558.5

BRAT1-203, Transcript of BRCA1 associated ATM activator 1, humanhuman

TSL 5

Gene BRAT1, Length 4,440 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRAT1-203ENST00000467558 CTNNA3Q9UI47 895 aa16.46■□□□□ 0.23
BRAT1-203ENST00000467558 A0A087WZG4 1122 aa16.46■□□□□ 0.23
BRAT1-203ENST00000467558 VAMP4O75379 141 aa16.46■□□□□ 0.23
BRAT1-203ENST00000467558 ADAMTS2O95450 1211 aa16.46■□□□□ 0.23
BRAT1-203ENST00000467558 MRE11P49959 708 aa16.46■□□□□ 0.23
BRAT1-203ENST00000467558 HSP90AB3PQ58FF7 597 aa16.46■□□□□ 0.23
BRAT1-203ENST00000467558 EYA1Q99502 592 aa16.46■□□□□ 0.23
BRAT1-203ENST00000467558 AKAP2Q9Y2D5 859 aa16.46■□□□□ 0.23
BRAT1-203ENST00000467558 MAP3K2Q9Y2U5 619 aa16.46■□□□□ 0.23
BRAT1-203ENST00000467558 INSRP06213 1382 aa16.46■□□□□ 0.23
BRAT1-203ENST00000467558 CHD1O14646 1710 aa16.46■□□□□ 0.23
BRAT1-203ENST00000467558 TMEM2Q9UHN6 1383 aa16.46■□□□□ 0.23
BRAT1-203ENST00000467558 WDR33Q9C0J8 1336 aaKnown RBP16.46■□□□□ 0.22
BRAT1-203ENST00000467558 GCP02774 474 aa16.46■□□□□ 0.22
BRAT1-203ENST00000467558 CCDC85AQ96PX6 553 aaPredicted RBP16.45■□□□□ 0.22
BRAT1-203ENST00000467558 SLC3A2P08195 630 aaKnown RBP16.45■□□□□ 0.22
BRAT1-203ENST00000467558 SIRT1Q96EB6 747 aa16.45■□□□□ 0.22
BRAT1-203ENST00000467558 ZSCAN31Q96LW9 406 aaPredicted RBP16.45■□□□□ 0.22
BRAT1-203ENST00000467558 ZNF652Q9Y2D9 606 aa16.45■□□□□ 0.22
BRAT1-203ENST00000467558 CFAP65Q6ZU64 1925 aaKnown RBP16.45■□□□□ 0.22
BRAT1-203ENST00000467558 PRPF40AO75400 957 aaKnown RBP16.45■□□□□ 0.22
BRAT1-203ENST00000467558 KDM5DQ9BY66 1539 aa16.45■□□□□ 0.22
BRAT1-203ENST00000467558 JAKMIP1Q96N16 626 aaKnown RBP16.44■□□□□ 0.22
BRAT1-203ENST00000467558 HMGB2P26583 209 aaKnown RBP16.44■□□□□ 0.22
BRAT1-203ENST00000467558 IGHMBP2P38935 993 aaKnown RBP16.44■□□□□ 0.22
BRAT1-203ENST00000467558 BRMS1Q9HCU9 246 aa16.44■□□□□ 0.22
BRAT1-203ENST00000467558 METTL24Q5JXM2 366 aa16.44■□□□□ 0.22
BRAT1-203ENST00000467558 PDRG1Q9NUG6 133 aa16.43■□□□□ 0.22
BRAT1-203ENST00000467558 CAVIN1Q6NZI2 390 aaKnown RBP16.43■□□□□ 0.22
BRAT1-203ENST00000467558 PPP1R42Q7Z4L9 355 aa16.43■□□□□ 0.22
BRAT1-203ENST00000467558 MEIS3Q99687 375 aa16.43■□□□□ 0.22
BRAT1-203ENST00000467558 RRP12Q5JTH9 1297 aaKnown RBP16.43■□□□□ 0.22
BRAT1-203ENST00000467558 CCDC47Q96A33 483 aaKnown RBP16.43■□□□□ 0.22
BRAT1-203ENST00000467558 IP6K1Q92551 441 aa16.42■□□□□ 0.22
BRAT1-203ENST00000467558 BOLA2Q9H3K6 86 aa16.42■□□□□ 0.22
BRAT1-203ENST00000467558 PES1O00541 588 aaKnown RBP16.42■□□□□ 0.22
BRAT1-203ENST00000467558 TPM3P06753 285 aa16.42■□□□□ 0.22
BRAT1-203ENST00000467558 HOXC9P31274 260 aa16.42■□□□□ 0.22
BRAT1-203ENST00000467558 NUCB1Q02818 461 aa16.42■□□□□ 0.22
BRAT1-203ENST00000467558 IFIT5Q13325 482 aaKnown RBP16.42■□□□□ 0.22
BRAT1-203ENST00000467558 SDF4Q9BRK5 362 aa16.42■□□□□ 0.22
BRAT1-203ENST00000467558 ANXA1P04083 346 aa16.42■□□□□ 0.22
BRAT1-203ENST00000467558 IL13P35225 146 aa16.42■□□□□ 0.22
BRAT1-203ENST00000467558 ANKRD44Q8N8A2 993 aa16.42■□□□□ 0.22
BRAT1-203ENST00000467558 SPINK5Q9NQ38 1064 aaPredicted RBP16.42■□□□□ 0.22
BRAT1-203ENST00000467558 ZCCHC11Q5TAX3 1644 aaKnown RBP16.42■□□□□ 0.22
BRAT1-203ENST00000467558 PDIA4P13667 645 aaKnown RBP16.42■□□□□ 0.22
BRAT1-203ENST00000467558 TSPYL6Q8N831 410 aa16.42■□□□□ 0.22
BRAT1-203ENST00000467558 ZCRB1Q8TBF4 217 aaKnown RBP16.42■□□□□ 0.22
BRAT1-203ENST00000467558 ECHDC1Q9NTX5 307 aa16.42■□□□□ 0.22
BRAT1-203ENST00000467558 FIBPO43427 364 aa16.41■□□□□ 0.22
BRAT1-203ENST00000467558 LETM1O95202 739 aaPredicted RBP16.41■□□□□ 0.22
BRAT1-203ENST00000467558 ANKRD13DQ6ZTN6 518 aa16.41■□□□□ 0.22
BRAT1-203ENST00000467558 CHPF2Q9P2E5 772 aa16.41■□□□□ 0.22
BRAT1-203ENST00000467558 NCBP3Q53F19 620 aaKnown RBP16.41■□□□□ 0.22
BRAT1-203ENST00000467558 PLEKHG3A1L390 1219 aa16.41■□□□□ 0.22
BRAT1-203ENST00000467558 TPM1P09493 284 aa16.41■□□□□ 0.22
BRAT1-203ENST00000467558 LRRC59Q96AG4 307 aaKnown RBP16.41■□□□□ 0.22
BRAT1-203ENST00000467558 ZBTB3Q9H5J0 574 aa16.41■□□□□ 0.22
BRAT1-203ENST00000467558 LARP1BQ659C4 914 aaKnown RBP16.4■□□□□ 0.22
BRAT1-203ENST00000467558 CCDC8Q9H0W5 538 aaPredicted RBP16.4■□□□□ 0.22
BRAT1-203ENST00000467558 TSR1Q2NL82 804 aaKnown RBP16.4■□□□□ 0.22
BRAT1-203ENST00000467558 MAGI2Q86UL8 1455 aa16.4■□□□□ 0.22
BRAT1-203ENST00000467558 RLBP1P12271 317 aa16.4■□□□□ 0.22
BRAT1-203ENST00000467558 NGLY1Q96IV0 654 aa16.4■□□□□ 0.22
BRAT1-203ENST00000467558 MCM4P33991 863 aa16.39■□□□□ 0.22
BRAT1-203ENST00000467558 NASPP49321 788 aaPredicted RBP16.39■□□□□ 0.22
BRAT1-203ENST00000467558 STK3Q13188 491 aa16.39■□□□□ 0.22
BRAT1-203ENST00000467558 ZNF396Q96N95 335 aaPredicted RBP16.39■□□□□ 0.22
BRAT1-203ENST00000467558 TRMT112Q9UI30 125 aaKnown RBP16.39■□□□□ 0.22
BRAT1-203ENST00000467558 IDH1O75874 414 aaKnown RBP16.39■□□□□ 0.21
BRAT1-203ENST00000467558 TBC1D9Q6ZT07 1266 aa16.39■□□□□ 0.21
BRAT1-203ENST00000467558 UBE3BQ7Z3V4 1068 aa16.39■□□□□ 0.21
BRAT1-203ENST00000467558 MAP3K5Q99683 1374 aa16.39■□□□□ 0.21
BRAT1-203ENST00000467558 IFIT1P09914 478 aaKnown RBP16.39■□□□□ 0.21
BRAT1-203ENST00000467558 ANKRD20A12PQ8NF67 263 aa16.39■□□□□ 0.21
BRAT1-203ENST00000467558 UPF3BQ9BZI7 483 aaKnown RBP16.39■□□□□ 0.21
BRAT1-203ENST00000467558 SBNO1A3KN83 1393 aa16.39■□□□□ 0.21
BRAT1-203ENST00000467558 ALDH1L1O75891 902 aa16.39■□□□□ 0.21
BRAT1-203ENST00000467558 CWC25Q9NXE8 425 aaPredicted RBP16.39■□□□□ 0.21
BRAT1-203ENST00000467558 SOS1Q07889 1333 aaPredicted RBP16.39■□□□□ 0.21
BRAT1-203ENST00000467558 LRRIQ1Q96JM4 1722 aa16.38■□□□□ 0.21
BRAT1-203ENST00000467558 TPM2P07951 284 aa16.38■□□□□ 0.21
BRAT1-203ENST00000467558 CASTP20810 708 aaKnown RBP16.38■□□□□ 0.21
BRAT1-203ENST00000467558 BICDL1Q6ZP65 573 aa16.38■□□□□ 0.21
BRAT1-203ENST00000467558 LRP2BPQ9P2M1 347 aa16.38■□□□□ 0.21
BRAT1-203ENST00000467558 KINO60870 393 aaKnown RBP16.38■□□□□ 0.21
BRAT1-203ENST00000467558 KRT85P78386 507 aa16.38■□□□□ 0.21
BRAT1-203ENST00000467558 TTC22Q5TAA0 569 aa16.38■□□□□ 0.21
BRAT1-203ENST00000467558 CTDP1Q9Y5B0 961 aaPredicted RBP16.38■□□□□ 0.21
BRAT1-203ENST00000467558 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.37■□□□□ 0.21
BRAT1-203ENST00000467558 ATP5J2-PTCD1G3V325 749 aa16.37■□□□□ 0.21
BRAT1-203ENST00000467558 LTKP29376 864 aa16.37■□□□□ 0.21
BRAT1-203ENST00000467558 PLXNC1O60486 1568 aa16.37■□□□□ 0.21
BRAT1-203ENST00000467558 HSPA2P54652 639 aa16.37■□□□□ 0.21
BRAT1-203ENST00000467558 KSR2Q6VAB6 950 aa16.37■□□□□ 0.21
BRAT1-203ENST00000467558 TRIM22Q8IYM9 498 aa16.37■□□□□ 0.21
BRAT1-203ENST00000467558 U3KPZ7 1027 aaPredicted RBP16.37■□□□□ 0.21
BRAT1-203ENST00000467558 ZBTB40Q9NUA8 1239 aa16.37■□□□□ 0.21
BRAT1-203ENST00000467558 MYOM2P54296 1465 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms