RNA–Protein interactions for RNA: ENST00000463631.1

HMGN1-209, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 583 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-209ENST00000463631 COL5A3P25940 1745 aaPredicted RBP23.92■■□□□ 1.42
HMGN1-209ENST00000463631 KIAA1551Q9HCM1 1747 aa23.92■■□□□ 1.42
HMGN1-209ENST00000463631 GNPATO15228 680 aa23.91■■□□□ 1.42
HMGN1-209ENST00000463631 ATP6V1AP38606 617 aa23.9■■□□□ 1.42
HMGN1-209ENST00000463631 EIF4A2Q14240 407 aaKnown RBP23.9■■□□□ 1.42
HMGN1-209ENST00000463631 ATG3Q9NT62 314 aa23.9■■□□□ 1.42
HMGN1-209ENST00000463631 PXDNLA1KZ92 1463 aa23.87■■□□□ 1.41
HMGN1-209ENST00000463631 CLSPNQ9HAW4 1339 aa23.86■■□□□ 1.41
HMGN1-209ENST00000463631 ERVV-2B6SEH9 535 aa23.86■■□□□ 1.41
HMGN1-209ENST00000463631 C10orf71Q711Q0 1435 aa23.85■■□□□ 1.41
HMGN1-209ENST00000463631 MMP10P09238 476 aa23.84■■□□□ 1.41
HMGN1-209ENST00000463631 DCAF5Q96JK2 942 aa23.84■■□□□ 1.41
HMGN1-209ENST00000463631 C4AP0C0L4 1744 aa23.84■■□□□ 1.41
HMGN1-209ENST00000463631 KDM6AO15550 1401 aaPredicted RBP23.84■■□□□ 1.41
HMGN1-209ENST00000463631 HSP90AB1P08238 724 aaKnown RBP23.83■■□□□ 1.41
HMGN1-209ENST00000463631 ADRA2BP18089 450 aa23.83■■□□□ 1.41
HMGN1-209ENST00000463631 SLC4A9Q96Q91 983 aa23.83■■□□□ 1.41
HMGN1-209ENST00000463631 RTCBQ9Y3I0 505 aaKnown RBP23.83■■□□□ 1.41
HMGN1-209ENST00000463631 CNTNAP4Q9C0A0 1308 aa23.83■■□□□ 1.4
HMGN1-209ENST00000463631 RC3H1Q5TC82 1133 aaKnown RBP23.82■■□□□ 1.4
HMGN1-209ENST00000463631 N4BP2Q86UW6 1770 aaPredicted RBP23.82■■□□□ 1.4
HMGN1-209ENST00000463631 BRCA1P38398 1863 aaKnown RBP23.81■■□□□ 1.4
HMGN1-209ENST00000463631 HSPA6P17066 643 aa23.81■■□□□ 1.4
HMGN1-209ENST00000463631 NLGN1Q8N2Q7 840 aa23.81■■□□□ 1.4
HMGN1-209ENST00000463631 WWC3Q9ULE0 1092 aa23.81■■□□□ 1.4
HMGN1-209ENST00000463631 MYH14Q7Z406 1995 aaKnown RBP23.8■■□□□ 1.4
HMGN1-209ENST00000463631 TNNT2P45379 298 aaPredicted RBP23.8■■□□□ 1.4
HMGN1-209ENST00000463631 TGFB2P61812 414 aa23.8■■□□□ 1.4
HMGN1-209ENST00000463631 TRAPPC3LQ5T215 181 aa23.8■■□□□ 1.4
HMGN1-209ENST00000463631 ZNF526Q8TF50 670 aaPredicted RBP23.8■■□□□ 1.4
HMGN1-209ENST00000463631 AMOTQ4VCS5 1084 aa23.78■■□□□ 1.4
HMGN1-209ENST00000463631 PLEKHO1Q53GL0 409 aaPredicted RBP23.78■■□□□ 1.4
HMGN1-209ENST00000463631 KIF3CO14782 793 aa23.76■■□□□ 1.39
HMGN1-209ENST00000463631 RPS6KA4O75676 772 aa23.76■■□□□ 1.39
HMGN1-209ENST00000463631 ZNF530Q6P9A1 599 aaPredicted RBP23.76■■□□□ 1.39
HMGN1-209ENST00000463631 ARHGEF1Q92888 912 aaKnown RBP23.76■■□□□ 1.39
HMGN1-209ENST00000463631 RBM42Q9BTD8 480 aaKnown RBP23.76■■□□□ 1.39
HMGN1-209ENST00000463631 TJP1Q07157 1748 aa23.76■■□□□ 1.39
HMGN1-209ENST00000463631 GYS1P13807 737 aa23.75■■□□□ 1.39
HMGN1-209ENST00000463631 IFFO2Q5TF58 517 aa23.75■■□□□ 1.39
HMGN1-209ENST00000463631 POLR3GLQ9BT43 218 aa23.75■■□□□ 1.39
HMGN1-209ENST00000463631 ARFGEF1Q9Y6D6 1849 aa23.75■■□□□ 1.39
HMGN1-209ENST00000463631 CCDC87Q9NVE4 849 aa23.74■■□□□ 1.39
HMGN1-209ENST00000463631 SCN11AQ9UI33 1791 aa23.73■■□□□ 1.39
HMGN1-209ENST00000463631 CABP4P57796 275 aa23.73■■□□□ 1.39
HMGN1-209ENST00000463631 PANK3Q9H999 370 aa23.73■■□□□ 1.39
HMGN1-209ENST00000463631 RFC4P35249 363 aa23.72■■□□□ 1.39
HMGN1-209ENST00000463631 EIF4G2P78344 907 aaKnown RBP eCLIP23.72■■□□□ 1.39
HMGN1-209ENST00000463631 A0A0G2JLW4 131 aa23.71■■□□□ 1.39
HMGN1-209ENST00000463631 AEBP1Q8IUX7 1158 aa23.71■■□□□ 1.39
HMGN1-209ENST00000463631 BCS1LQ9Y276 419 aa23.71■■□□□ 1.39
HMGN1-209ENST00000463631 ADAMTS7Q9UKP4 1686 aa23.7■■□□□ 1.39
HMGN1-209ENST00000463631 MTHFSP49914 203 aa23.7■■□□□ 1.38
HMGN1-209ENST00000463631 C1orf141Q5JVX7 400 aa23.7■■□□□ 1.38
HMGN1-209ENST00000463631 PARP3Q9Y6F1 533 aa23.7■■□□□ 1.38
HMGN1-209ENST00000463631 DPEP1P16444 411 aa23.69■■□□□ 1.38
HMGN1-209ENST00000463631 HSPA5P11021 654 aaKnown RBP23.68■■□□□ 1.38
HMGN1-209ENST00000463631 USP42Q9H9J4 1324 aaKnown RBP23.67■■□□□ 1.38
HMGN1-209ENST00000463631 CRKLP46109 303 aaKnown RBP23.67■■□□□ 1.38
HMGN1-209ENST00000463631 MORC1Q86VD1 984 aa23.67■■□□□ 1.38
HMGN1-209ENST00000463631 MRC1P22897 1456 aa23.67■■□□□ 1.38
HMGN1-209ENST00000463631 PTCD1O75127 700 aaKnown RBP23.66■■□□□ 1.38
HMGN1-209ENST00000463631 NFATC2IPQ8NCF5 419 aa23.66■■□□□ 1.38
HMGN1-209ENST00000463631 TOMM70O94826 608 aa23.65■■□□□ 1.38
HMGN1-209ENST00000463631 FCHSD2O94868 740 aa23.65■■□□□ 1.38
HMGN1-209ENST00000463631 KCNA3P22001 575 aa23.65■■□□□ 1.38
HMGN1-209ENST00000463631 SULT6B1Q6IMI4 303 aa23.64■■□□□ 1.37
HMGN1-209ENST00000463631 ARHGAP27Q6ZUM4 889 aa23.64■■□□□ 1.37
HMGN1-209ENST00000463631 IL13P35225 146 aa23.63■■□□□ 1.37
HMGN1-209ENST00000463631 APLP1P51693 650 aa23.63■■□□□ 1.37
HMGN1-209ENST00000463631 DDR1Q08345 913 aa23.62■■□□□ 1.37
HMGN1-209ENST00000463631 SRP68Q9UHB9 627 aaKnown RBP23.62■■□□□ 1.37
HMGN1-209ENST00000463631 VIRMAQ69YN4 1812 aaKnown RBP23.61■■□□□ 1.37
HMGN1-209ENST00000463631 FKBP8Q14318 412 aa23.61■■□□□ 1.37
HMGN1-209ENST00000463631 PIM2Q9P1W9 311 aa23.61■■□□□ 1.37
HMGN1-209ENST00000463631 INTS5Q6P9B9 1019 aaKnown RBP23.6■■□□□ 1.37
HMGN1-209ENST00000463631 KNSTRNQ9Y448 316 aa23.6■■□□□ 1.37
HMGN1-209ENST00000463631 AKAP4Q5JQC9 854 aa23.59■■□□□ 1.37
HMGN1-209ENST00000463631 NMRK2Q9NPI5 230 aa23.59■■□□□ 1.37
HMGN1-209ENST00000463631 NRXN2Q9P2S2 1712 aa23.59■■□□□ 1.37
HMGN1-209ENST00000463631 KCPQ6ZWJ8 1503 aa23.59■■□□□ 1.37
HMGN1-209ENST00000463631 DALRD3Q5D0E6 543 aaKnown RBP23.58■■□□□ 1.37
HMGN1-209ENST00000463631 C9orf131Q5VYM1 1079 aa23.58■■□□□ 1.37
HMGN1-209ENST00000463631 PCGF6Q9BYE7 350 aa23.58■■□□□ 1.37
HMGN1-209ENST00000463631 SLC52A2Q9HAB3 445 aa23.58■■□□□ 1.37
HMGN1-209ENST00000463631 WDR90Q96KV7 1748 aa23.58■■□□□ 1.37
HMGN1-209ENST00000463631 SOS1Q07889 1333 aaPredicted RBP23.58■■□□□ 1.36
HMGN1-209ENST00000463631 POLRMTO00411 1230 aaKnown RBP23.57■■□□□ 1.36
HMGN1-209ENST00000463631 AMER1Q5JTC6 1135 aaPredicted RBP23.57■■□□□ 1.36
HMGN1-209ENST00000463631 SBF1O95248 1867 aa23.57■■□□□ 1.36
HMGN1-209ENST00000463631 UBR2Q8IWV8 1755 aa23.57■■□□□ 1.36
HMGN1-209ENST00000463631 TNRC6CQ9HCJ0 1690 aaKnown RBP23.57■■□□□ 1.36
HMGN1-209ENST00000463631 DLEC1Q9Y238 1755 aa23.56■■□□□ 1.36
HMGN1-209ENST00000463631 TM4SF1P30408 202 aa23.56■■□□□ 1.36
HMGN1-209ENST00000463631 RBM46Q8TBY0 533 aaKnown RBP23.56■■□□□ 1.36
HMGN1-209ENST00000463631 AFDNP55196 1824 aaKnown RBP23.56■■□□□ 1.36
HMGN1-209ENST00000463631 DNAJC10Q8IXB1 793 aa23.55■■□□□ 1.36
HMGN1-209ENST00000463631 DNAJC5GQ8N7S2 189 aa23.54■■□□□ 1.36
HMGN1-209ENST00000463631 COL15A1P39059 1388 aa23.53■■□□□ 1.36
HMGN1-209ENST00000463631 ZPR1O75312 459 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 146 ms