RNA–Protein interactions for RNA: ENST00000454428.5

UBE2D4-209, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

TSL 3

Gene UBE2D4, Length 288 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-209ENST00000454428 NMRK2Q9NPI5 230 aa24.1■■□□□ 1.45
UBE2D4-209ENST00000454428 KDRP35968 1356 aa24.09■■□□□ 1.45
UBE2D4-209ENST00000454428 A0A0G2JLW4 131 aa24.09■■□□□ 1.45
UBE2D4-209ENST00000454428 ATP6V1AP38606 617 aa24.09■■□□□ 1.45
UBE2D4-209ENST00000454428 TGFB2P61812 414 aa24.09■■□□□ 1.45
UBE2D4-209ENST00000454428 TMOD3Q9NYL9 352 aa24.09■■□□□ 1.45
UBE2D4-209ENST00000454428 CARD14Q9BXL6 1004 aa24.08■■□□□ 1.45
UBE2D4-209ENST00000454428 ATG3Q9NT62 314 aa24.08■■□□□ 1.45
UBE2D4-209ENST00000454428 SPG7Q9UQ90 795 aa24.08■■□□□ 1.45
UBE2D4-209ENST00000454428 BCS1LQ9Y276 419 aa24.08■■□□□ 1.45
UBE2D4-209ENST00000454428 SLC4A9Q96Q91 983 aa24.07■■□□□ 1.44
UBE2D4-209ENST00000454428 C4AP0C0L4 1744 aa24.07■■□□□ 1.44
UBE2D4-209ENST00000454428 ZNF831Q5JPB2 1677 aa24.06■■□□□ 1.44
UBE2D4-209ENST00000454428 PHKG2P15735 406 aa24.06■■□□□ 1.44
UBE2D4-209ENST00000454428 EYA1Q99502 592 aa24.06■■□□□ 1.44
UBE2D4-209ENST00000454428 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.06■■□□□ 1.44
UBE2D4-209ENST00000454428 COL5A3P25940 1745 aaPredicted RBP24.06■■□□□ 1.44
UBE2D4-209ENST00000454428 DPEP1P16444 411 aa24.04■■□□□ 1.44
UBE2D4-209ENST00000454428 TMF1P82094 1093 aa24.04■■□□□ 1.44
UBE2D4-209ENST00000454428 ARHGAP27Q6ZUM4 889 aa24.04■■□□□ 1.44
UBE2D4-209ENST00000454428 ARFGEF1Q9Y6D6 1849 aa24.04■■□□□ 1.44
UBE2D4-209ENST00000454428 WASHC2AQ641Q2 1341 aa24.03■■□□□ 1.44
UBE2D4-209ENST00000454428 KCNA3P22001 575 aa24.02■■□□□ 1.44
UBE2D4-209ENST00000454428 HTRA3P83110 453 aa24.02■■□□□ 1.44
UBE2D4-209ENST00000454428 TRAPPC3LQ5T215 181 aa24.02■■□□□ 1.44
UBE2D4-209ENST00000454428 IFNL2Q8IZJ0 200 aa24.02■■□□□ 1.44
UBE2D4-209ENST00000454428 NLGN1Q8N2Q7 840 aa24.02■■□□□ 1.44
UBE2D4-209ENST00000454428 ARHGEF1Q92888 912 aaKnown RBP24.02■■□□□ 1.44
UBE2D4-209ENST00000454428 MYH14Q7Z406 1995 aaKnown RBP24.02■■□□□ 1.43
UBE2D4-209ENST00000454428 GYS1P13807 737 aa24.01■■□□□ 1.43
UBE2D4-209ENST00000454428 RTCBQ9Y3I0 505 aaKnown RBP24.01■■□□□ 1.43
UBE2D4-209ENST00000454428 PPM1GO15355 546 aaPredicted RBP24■■□□□ 1.43
UBE2D4-209ENST00000454428 RBM46Q8TBY0 533 aaKnown RBP24■■□□□ 1.43
UBE2D4-209ENST00000454428 FCHSD2O94868 740 aa23.99■■□□□ 1.43
UBE2D4-209ENST00000454428 COL13A1Q5TAT6 717 aaPredicted RBP23.98■■□□□ 1.43
UBE2D4-209ENST00000454428 RC3H1Q5TC82 1133 aaKnown RBP23.98■■□□□ 1.43
UBE2D4-209ENST00000454428 C9orf131Q5VYM1 1079 aa23.98■■□□□ 1.43
UBE2D4-209ENST00000454428 JMYQ8N9B5 988 aa23.98■■□□□ 1.43
UBE2D4-209ENST00000454428 KLRG1Q96E93 195 aa23.98■■□□□ 1.43
UBE2D4-209ENST00000454428 CCDC87Q9NVE4 849 aa23.98■■□□□ 1.43
UBE2D4-209ENST00000454428 KCPQ6ZWJ8 1503 aa23.97■■□□□ 1.43
UBE2D4-209ENST00000454428 CNTNAP4Q9C0A0 1308 aa23.97■■□□□ 1.43
UBE2D4-209ENST00000454428 ADRA2BP18089 450 aa23.96■■□□□ 1.43
UBE2D4-209ENST00000454428 POLKQ9UBT6 870 aa23.96■■□□□ 1.43
UBE2D4-209ENST00000454428 PLEKHG2Q9H7P9 1386 aa23.95■■□□□ 1.42
UBE2D4-209ENST00000454428 RPS6KA4O75676 772 aa23.95■■□□□ 1.42
UBE2D4-209ENST00000454428 SBF1O95248 1867 aa23.94■■□□□ 1.42
UBE2D4-209ENST00000454428 DCAF5Q96JK2 942 aa23.94■■□□□ 1.42
UBE2D4-209ENST00000454428 RBM42Q9BTD8 480 aaKnown RBP23.94■■□□□ 1.42
UBE2D4-209ENST00000454428 FSTL1Q12841 308 aa23.93■■□□□ 1.42
UBE2D4-209ENST00000454428 PARP3Q9Y6F1 533 aa23.93■■□□□ 1.42
UBE2D4-209ENST00000454428 ERVV-2B6SEH9 535 aa23.92■■□□□ 1.42
UBE2D4-209ENST00000454428 RFC4P35249 363 aa23.92■■□□□ 1.42
UBE2D4-209ENST00000454428 EIF4A2Q14240 407 aaKnown RBP23.92■■□□□ 1.42
UBE2D4-209ENST00000454428 KDM6AO15550 1401 aaPredicted RBP23.92■■□□□ 1.42
UBE2D4-209ENST00000454428 TNRC6CQ9HCJ0 1690 aaKnown RBP23.9■■□□□ 1.42
UBE2D4-209ENST00000454428 ADAMTS7Q9UKP4 1686 aa23.9■■□□□ 1.42
UBE2D4-209ENST00000454428 CDCA8Q53HL2 280 aa23.9■■□□□ 1.42
UBE2D4-209ENST00000454428 PIM2Q9P1W9 311 aa23.9■■□□□ 1.42
UBE2D4-209ENST00000454428 DDR1Q08345 913 aa23.89■■□□□ 1.41
UBE2D4-209ENST00000454428 C16orf71Q8IYS4 520 aaPredicted RBP23.89■■□□□ 1.41
UBE2D4-209ENST00000454428 SRP68Q9UHB9 627 aaKnown RBP23.89■■□□□ 1.41
UBE2D4-209ENST00000454428 TJP1Q07157 1748 aa23.88■■□□□ 1.41
UBE2D4-209ENST00000454428 FKBP8Q14318 412 aa23.88■■□□□ 1.41
UBE2D4-209ENST00000454428 RRAGCQ9HB90 399 aa23.88■■□□□ 1.41
UBE2D4-209ENST00000454428 RNF181Q9P0P0 153 aa23.88■■□□□ 1.41
UBE2D4-209ENST00000454428 DALRD3Q5D0E6 543 aaKnown RBP23.87■■□□□ 1.41
UBE2D4-209ENST00000454428 KDM2BQ8NHM5 1336 aa23.86■■□□□ 1.41
UBE2D4-209ENST00000454428 CHRNA5P30532 468 aa23.86■■□□□ 1.41
UBE2D4-209ENST00000454428 USP42Q9H9J4 1324 aaKnown RBP23.84■■□□□ 1.41
UBE2D4-209ENST00000454428 CRKLP46109 303 aaKnown RBP23.84■■□□□ 1.41
UBE2D4-209ENST00000454428 HSP90AB1P08238 724 aaKnown RBP23.83■■□□□ 1.41
UBE2D4-209ENST00000454428 PTCD1O75127 700 aaKnown RBP23.82■■□□□ 1.4
UBE2D4-209ENST00000454428 CAPN15O75808 1086 aa23.82■■□□□ 1.4
UBE2D4-209ENST00000454428 CABP4P57796 275 aa23.82■■□□□ 1.4
UBE2D4-209ENST00000454428 POLRMTO00411 1230 aaKnown RBP23.81■■□□□ 1.4
UBE2D4-209ENST00000454428 TM4SF1P30408 202 aa23.81■■□□□ 1.4
UBE2D4-209ENST00000454428 TNNT2P45379 298 aaPredicted RBP23.81■■□□□ 1.4
UBE2D4-209ENST00000454428 PRELPP51888 382 aa23.8■■□□□ 1.4
UBE2D4-209ENST00000454428 ZNF530Q6P9A1 599 aaPredicted RBP23.8■■□□□ 1.4
UBE2D4-209ENST00000454428 INTS5Q6P9B9 1019 aaKnown RBP23.8■■□□□ 1.4
UBE2D4-209ENST00000454428 AFDNP55196 1824 aaKnown RBP23.8■■□□□ 1.4
UBE2D4-209ENST00000454428 RASSF7Q02833 373 aa23.79■■□□□ 1.4
UBE2D4-209ENST00000454428 PLEKHO1Q53GL0 409 aaPredicted RBP23.79■■□□□ 1.4
UBE2D4-209ENST00000454428 TNS4Q8IZW8 715 aa23.79■■□□□ 1.4
UBE2D4-209ENST00000454428 SMC1BQ8NDV3 1235 aa23.79■■□□□ 1.4
UBE2D4-209ENST00000454428 NRXN2Q9P2S2 1712 aa23.78■■□□□ 1.4
UBE2D4-209ENST00000454428 NFATC2IPQ8NCF5 419 aa23.77■■□□□ 1.4
UBE2D4-209ENST00000454428 DLEC1Q9Y238 1755 aa23.77■■□□□ 1.4
UBE2D4-209ENST00000454428 MTHFSP49914 203 aa23.76■■□□□ 1.39
UBE2D4-209ENST00000454428 AMOTQ4VCS5 1084 aa23.76■■□□□ 1.39
UBE2D4-209ENST00000454428 AEBP1Q8IUX7 1158 aa23.76■■□□□ 1.39
UBE2D4-209ENST00000454428 SCN11AQ9UI33 1791 aa23.75■■□□□ 1.39
UBE2D4-209ENST00000454428 ZC3H4Q9UPT8 1303 aaKnown RBP23.75■■□□□ 1.39
UBE2D4-209ENST00000454428 TIAM2Q8IVF5 1701 aa23.74■■□□□ 1.39
UBE2D4-209ENST00000454428 CCDC88AQ3V6T2 1871 aa23.74■■□□□ 1.39
UBE2D4-209ENST00000454428 USPL1Q5W0Q7 1092 aa23.73■■□□□ 1.39
UBE2D4-209ENST00000454428 SOS1Q07889 1333 aaPredicted RBP23.71■■□□□ 1.39
UBE2D4-209ENST00000454428 GLTPD2A6NH11 291 aa23.71■■□□□ 1.39
UBE2D4-209ENST00000454428 HSPA1AP0DMV8 641 aaKnown RBP23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms