RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 PIP4K2AP48426 406 aaPredicted RBP15.53■□□□□ 0.08
USP40-208ENST00000450966 NEK4P51957 841 aa15.53■□□□□ 0.08
USP40-208ENST00000450966 MAP3K11Q16584 847 aa15.53■□□□□ 0.08
USP40-208ENST00000450966 RNF168Q8IYW5 571 aaPredicted RBP15.53■□□□□ 0.08
USP40-208ENST00000450966 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.53■□□□□ 0.08
USP40-208ENST00000450966 ADCY5O95622 1261 aa15.53■□□□□ 0.08
USP40-208ENST00000450966 PIP4K2BP78356 416 aa15.53■□□□□ 0.08
USP40-208ENST00000450966 ZFP91Q96JP5 570 aaPredicted RBP15.53■□□□□ 0.08
USP40-208ENST00000450966 STRN4Q9NRL3 753 aa15.53■□□□□ 0.08
USP40-208ENST00000450966 KRT85P78386 507 aa15.52■□□□□ 0.08
USP40-208ENST00000450966 ANKRD18AQ8IVF6 992 aa15.52■□□□□ 0.08
USP40-208ENST00000450966 GSDMDP57764 484 aa15.52■□□□□ 0.08
USP40-208ENST00000450966 CCDC7Q96M83 1385 aa15.52■□□□□ 0.08
USP40-208ENST00000450966 MAP3K1Q13233 1512 aa15.52■□□□□ 0.08
USP40-208ENST00000450966 ERICH2A1L162 156 aa15.52■□□□□ 0.08
USP40-208ENST00000450966 FKBP5Q13451 457 aaPredicted RBP15.52■□□□□ 0.08
USP40-208ENST00000450966 ERC1Q8IUD2 1116 aa15.52■□□□□ 0.08
USP40-208ENST00000450966 NOL7Q9UMY1 257 aaKnown RBP15.52■□□□□ 0.08
USP40-208ENST00000450966 ARHGEF11O15085 1522 aa15.52■□□□□ 0.07
USP40-208ENST00000450966 CCDC27Q2M243 656 aa15.52■□□□□ 0.07
USP40-208ENST00000450966 TBC1D2Q9BYX2 928 aa15.52■□□□□ 0.07
USP40-208ENST00000450966 MAP2K1Q02750 393 aaPredicted RBP15.52■□□□□ 0.07
USP40-208ENST00000450966 SMTNL1A8MU46 457 aa15.51■□□□□ 0.07
USP40-208ENST00000450966 CCDC30Q5VVM6 783 aa15.51■□□□□ 0.07
USP40-208ENST00000450966 CEP57Q86XR8 500 aa15.51■□□□□ 0.07
USP40-208ENST00000450966 MIPOL1Q8TD10 442 aa15.51■□□□□ 0.07
USP40-208ENST00000450966 SEPT6Q14141 434 aa15.51■□□□□ 0.07
USP40-208ENST00000450966 BRMS1Q9HCU9 246 aa15.51■□□□□ 0.07
USP40-208ENST00000450966 APAF1O14727 1248 aa15.5■□□□□ 0.07
USP40-208ENST00000450966 GIGYF2Q6Y7W6 1299 aaKnown RBP15.5■□□□□ 0.07
USP40-208ENST00000450966 SRRTQ9BXP5 876 aaKnown RBP15.5■□□□□ 0.07
USP40-208ENST00000450966 CLIP2Q9UDT6 1046 aa15.5■□□□□ 0.07
USP40-208ENST00000450966 TOM1O60784 492 aa15.5■□□□□ 0.07
USP40-208ENST00000450966 CFAP45Q9UL16 551 aa15.5■□□□□ 0.07
USP40-208ENST00000450966 LRSAM1Q6UWE0 723 aa15.5■□□□□ 0.07
USP40-208ENST00000450966 NBPF11Q86T75 865 aa15.5■□□□□ 0.07
USP40-208ENST00000450966 SLU7O95391 586 aaKnown RBP15.49■□□□□ 0.07
USP40-208ENST00000450966 POTEDQ86YR6 584 aa15.49■□□□□ 0.07
USP40-208ENST00000450966 TEX2Q8IWB9 1127 aa15.49■□□□□ 0.07
USP40-208ENST00000450966 ZNF396Q96N95 335 aaPredicted RBP15.49■□□□□ 0.07
USP40-208ENST00000450966 NEBLO76041 1014 aa15.49■□□□□ 0.07
USP40-208ENST00000450966 SNW1Q13573 536 aaKnown RBP15.49■□□□□ 0.07
USP40-208ENST00000450966 CCDC43Q96MW1 224 aaKnown RBP15.49■□□□□ 0.07
USP40-208ENST00000450966 FMNL2Q96PY5 1086 aa15.49■□□□□ 0.07
USP40-208ENST00000450966 GGNBP2Q9H3C7 697 aa15.49■□□□□ 0.07
USP40-208ENST00000450966 DACH1Q9UI36 760 aa15.49■□□□□ 0.07
USP40-208ENST00000450966 CLNS1AP54105 237 aaKnown RBP15.49■□□□□ 0.07
USP40-208ENST00000450966 CABP4P57796 275 aa15.49■□□□□ 0.07
USP40-208ENST00000450966 CAMSAP2Q08AD1 1489 aa15.49■□□□□ 0.07
USP40-208ENST00000450966 ZNHIT6Q9NWK9 470 aaKnown RBP15.49■□□□□ 0.07
USP40-208ENST00000450966 BIVM-ERCC5R4GMW8 1640 aa15.49■□□□□ 0.07
USP40-208ENST00000450966 ERC2O15083 957 aa15.49■□□□□ 0.07
USP40-208ENST00000450966 WDR63Q8IWG1 891 aa15.49■□□□□ 0.07
USP40-208ENST00000450966 NFXL1Q6ZNB6 911 aa15.49■□□□□ 0.07
USP40-208ENST00000450966 CADPS2Q86UW7 1296 aa15.49■□□□□ 0.07
USP40-208ENST00000450966 NECTIN2Q92692 538 aa15.49■□□□□ 0.07
USP40-208ENST00000450966 KIF5BP33176 963 aa15.48■□□□□ 0.07
USP40-208ENST00000450966 OTUD6BQ8N6M0 293 aa15.48■□□□□ 0.07
USP40-208ENST00000450966 CCDC175P0C221 793 aa15.48■□□□□ 0.07
USP40-208ENST00000450966 SPECC1LQ69YQ0 1117 aa15.48■□□□□ 0.07
USP40-208ENST00000450966 ARHGAP29Q52LW3 1261 aa15.48■□□□□ 0.07
USP40-208ENST00000450966 CDK13Q14004 1512 aaKnown RBP15.48■□□□□ 0.07
USP40-208ENST00000450966 PANK1Q8TE04 598 aa15.48■□□□□ 0.07
USP40-208ENST00000450966 KIF5CO60282 957 aa15.47■□□□□ 0.07
USP40-208ENST00000450966 ZSCAN23Q3MJ62 389 aa15.47■□□□□ 0.07
USP40-208ENST00000450966 CCDC50Q8IVM0 306 aa15.47■□□□□ 0.07
USP40-208ENST00000450966 FAM114A1Q8IWE2 563 aa15.47■□□□□ 0.07
USP40-208ENST00000450966 UPF3BQ9BZI7 483 aaKnown RBP15.47■□□□□ 0.07
USP40-208ENST00000450966 RBBP5Q15291 538 aaKnown RBP15.47■□□□□ 0.07
USP40-208ENST00000450966 LUC7LQ9NQ29 371 aaKnown RBP15.47■□□□□ 0.07
USP40-208ENST00000450966 CCDC61Q9Y6R9 512 aa15.47■□□□□ 0.07
USP40-208ENST00000450966 FAM135AQ9P2D6 1515 aa15.47■□□□□ 0.07
USP40-208ENST00000450966 TNRQ92752 1358 aa15.47■□□□□ 0.07
USP40-208ENST00000450966 PSMA5P28066 241 aa15.47■□□□□ 0.07
USP40-208ENST00000450966 CNPY4Q8N129 248 aa15.47■□□□□ 0.07
USP40-208ENST00000450966 ZNF608Q9ULD9 1512 aaPredicted RBP15.47■□□□□ 0.07
USP40-208ENST00000450966 TAX1BP1Q86VP1 789 aa15.47■□□□□ 0.07
USP40-208ENST00000450966 TMX1Q9H3N1 280 aa15.47■□□□□ 0.07
USP40-208ENST00000450966 DHX29Q7Z478 1369 aaKnown RBP15.47■□□□□ 0.07
USP40-208ENST00000450966 GNL3LQ9NVN8 582 aaKnown RBP15.46■□□□□ 0.07
USP40-208ENST00000450966 NUTM2GQ5VZR2 741 aa15.46■□□□□ 0.07
USP40-208ENST00000450966 THOC2Q8NI27 1593 aaKnown RBP15.46■□□□□ 0.07
USP40-208ENST00000450966 RBM42Q9BTD8 480 aaKnown RBP15.46■□□□□ 0.07
USP40-208ENST00000450966 CEP83Q9Y592 693 aa15.46■□□□□ 0.07
USP40-208ENST00000450966 TUBB4BP68371 445 aa15.46■□□□□ 0.06
USP40-208ENST00000450966 MSL1Q68DK7 614 aa15.46■□□□□ 0.06
USP40-208ENST00000450966 CEP112Q8N8E3 955 aa15.46■□□□□ 0.06
USP40-208ENST00000450966 KRI1Q8N9T8 703 aaKnown RBP15.45■□□□□ 0.06
USP40-208ENST00000450966 ZBTB12Q9Y330 459 aaPredicted RBP15.45■□□□□ 0.06
USP40-208ENST00000450966 SAFBQ15424 915 aaKnown RBP eCLIP15.45■□□□□ 0.06
USP40-208ENST00000450966 GNAI3P08754 354 aa15.45■□□□□ 0.06
USP40-208ENST00000450966 CNKSR2Q8WXI2 1034 aa15.45■□□□□ 0.06
USP40-208ENST00000450966 GCC1Q96CN9 775 aa15.45■□□□□ 0.06
USP40-208ENST00000450966 SMC1AQ14683 1233 aaKnown RBP15.45■□□□□ 0.06
USP40-208ENST00000450966 NBPF8Q3BBV2 869 aa15.45■□□□□ 0.06
USP40-208ENST00000450966 SPATS2LQ9NUQ6 558 aaKnown RBP15.45■□□□□ 0.06
USP40-208ENST00000450966 CERS3Q8IU89 383 aa15.44■□□□□ 0.06
USP40-208ENST00000450966 MSH6P52701 1360 aa15.44■□□□□ 0.06
USP40-208ENST00000450966 ASXL2Q76L83 1435 aa15.44■□□□□ 0.06
USP40-208ENST00000450966 CCDC83Q8IWF9 413 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms