RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 SLC4A3P48751 1232 aa10.34□□□□□ -0.75
NIPBL-202ENST00000448238 ZSCAN30Q86W11 494 aa10.34□□□□□ -0.75
NIPBL-202ENST00000448238 GNL3LQ9NVN8 582 aaKnown RBP10.34□□□□□ -0.75
NIPBL-202ENST00000448238 CCDC172P0C7W6 258 aa10.34□□□□□ -0.75
NIPBL-202ENST00000448238 MIER3Q7Z3K6 550 aa10.34□□□□□ -0.75
NIPBL-202ENST00000448238 NACAP1Q9BZK3 213 aa10.34□□□□□ -0.75
NIPBL-202ENST00000448238 ATP2B1P20020 1258 aa10.34□□□□□ -0.75
NIPBL-202ENST00000448238 ATP11AP98196 1134 aa10.34□□□□□ -0.75
NIPBL-202ENST00000448238 JAKMIP2Q96AA8 810 aa10.34□□□□□ -0.75
NIPBL-202ENST00000448238 CCDC121Q6ZUS5 278 aa10.34□□□□□ -0.75
NIPBL-202ENST00000448238 CALCOCO2Q13137 446 aa10.33□□□□□ -0.76
NIPBL-202ENST00000448238 OTUD6BQ8N6M0 293 aa10.33□□□□□ -0.76
NIPBL-202ENST00000448238 KIAA0753Q2KHM9 967 aa10.33□□□□□ -0.76
NIPBL-202ENST00000448238 KLHL10Q6JEL2 608 aa10.33□□□□□ -0.76
NIPBL-202ENST00000448238 MAATS1Q7Z4T9 603 aa10.33□□□□□ -0.76
NIPBL-202ENST00000448238 RAB34Q9BZG1 259 aa10.33□□□□□ -0.76
NIPBL-202ENST00000448238 EBAG9O00559 213 aa10.33□□□□□ -0.76
NIPBL-202ENST00000448238 PHLDB2Q86SQ0 1253 aa10.33□□□□□ -0.76
NIPBL-202ENST00000448238 EIF2AQ9BY44 585 aaKnown RBP10.33□□□□□ -0.76
NIPBL-202ENST00000448238 GIMAP4Q9NUV9 329 aa10.33□□□□□ -0.76
NIPBL-202ENST00000448238 STK26Q9P289 416 aa10.33□□□□□ -0.76
NIPBL-202ENST00000448238 NBPF1Q3BBV0 1214 aa10.33□□□□□ -0.76
NIPBL-202ENST00000448238 GRPEL1Q9HAV7 217 aa10.33□□□□□ -0.76
NIPBL-202ENST00000448238 RASAL2Q9UJF2 1139 aa10.33□□□□□ -0.76
NIPBL-202ENST00000448238 KIF15Q9NS87 1388 aa10.33□□□□□ -0.76
NIPBL-202ENST00000448238 GSDMDP57764 484 aa10.33□□□□□ -0.76
NIPBL-202ENST00000448238 NAA25Q14CX7 972 aa10.33□□□□□ -0.76
NIPBL-202ENST00000448238 WDHD1O75717 1129 aaPredicted RBP10.32□□□□□ -0.76
NIPBL-202ENST00000448238 PRPHP41219 470 aa10.32□□□□□ -0.76
NIPBL-202ENST00000448238 GOLGA1Q92805 767 aa10.32□□□□□ -0.76
NIPBL-202ENST00000448238 TACC3Q9Y6A5 838 aa10.32□□□□□ -0.76
NIPBL-202ENST00000448238 MRVI1Q9Y6F6 885 aa10.32□□□□□ -0.76
NIPBL-202ENST00000448238 HVCN1Q96D96 273 aa10.32□□□□□ -0.76
NIPBL-202ENST00000448238 SPDYE4A6NLX3 237 aa10.32□□□□□ -0.76
NIPBL-202ENST00000448238 CAPZA3Q96KX2 299 aa10.32□□□□□ -0.76
NIPBL-202ENST00000448238 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.32□□□□□ -0.76
NIPBL-202ENST00000448238 MTUS1Q9ULD2 1270 aa10.32□□□□□ -0.76
NIPBL-202ENST00000448238 NAA16Q6N069 864 aaPredicted RBP10.32□□□□□ -0.76
NIPBL-202ENST00000448238 CIB2O75838 187 aa10.32□□□□□ -0.76
NIPBL-202ENST00000448238 RNF8O76064 485 aa10.32□□□□□ -0.76
NIPBL-202ENST00000448238 PDE1CQ14123 709 aaPredicted RBP10.32□□□□□ -0.76
NIPBL-202ENST00000448238 ZNF365Q70YC5 407 aa10.32□□□□□ -0.76
NIPBL-202ENST00000448238 TRIM7Q9C029 511 aa10.32□□□□□ -0.76
NIPBL-202ENST00000448238 EID1Q9Y6B2 187 aa10.32□□□□□ -0.76
NIPBL-202ENST00000448238 LRSAM1Q6UWE0 723 aa10.31□□□□□ -0.76
NIPBL-202ENST00000448238 NUP62CLQ9H1M0 184 aa10.31□□□□□ -0.76
NIPBL-202ENST00000448238 CACYBPQ9HB71 228 aaKnown RBP10.31□□□□□ -0.76
NIPBL-202ENST00000448238 ARFGAP3Q9NP61 516 aa10.31□□□□□ -0.76
NIPBL-202ENST00000448238 BICDL2A1A5D9 508 aa10.31□□□□□ -0.76
NIPBL-202ENST00000448238 WHAMMP3Q1A5X7 153 aa10.31□□□□□ -0.76
NIPBL-202ENST00000448238 A6NNZ2 444 aa10.31□□□□□ -0.76
NIPBL-202ENST00000448238 TUBB8Q3ZCM7 444 aa10.31□□□□□ -0.76
NIPBL-202ENST00000448238 PAXBP1Q9Y5B6 917 aa10.31□□□□□ -0.76
NIPBL-202ENST00000448238 URI1O94763 535 aaPredicted RBP10.31□□□□□ -0.76
NIPBL-202ENST00000448238 TTC21AQ8NDW8 1320 aa10.31□□□□□ -0.76
NIPBL-202ENST00000448238 TSNAXIP1Q2TAA8 658 aa10.31□□□□□ -0.76
NIPBL-202ENST00000448238 CCDC69A6NI79 296 aa10.31□□□□□ -0.76
NIPBL-202ENST00000448238 ERCC5P28715 1186 aaPredicted RBP10.31□□□□□ -0.76
NIPBL-202ENST00000448238 ZNF76P36508 570 aa10.31□□□□□ -0.76
NIPBL-202ENST00000448238 TXNDC16Q9P2K2 825 aa10.31□□□□□ -0.76
NIPBL-202ENST00000448238 GBP1P32455 592 aa10.3□□□□□ -0.76
NIPBL-202ENST00000448238 KRT222Q8N1A0 295 aa10.3□□□□□ -0.76
NIPBL-202ENST00000448238 YEATS4O95619 227 aa10.3□□□□□ -0.76
NIPBL-202ENST00000448238 TAOK1Q7L7X3 1001 aa10.3□□□□□ -0.76
NIPBL-202ENST00000448238 CCDC144CPQ8IYA2 1237 aa10.3□□□□□ -0.76
NIPBL-202ENST00000448238 NEUROD6Q96NK8 337 aa10.3□□□□□ -0.76
NIPBL-202ENST00000448238 TRPC3Q13507 836 aa10.3□□□□□ -0.76
NIPBL-202ENST00000448238 MAP3K11Q16584 847 aa10.3□□□□□ -0.76
NIPBL-202ENST00000448238 SELENOOQ9BVL4 669 aa10.3□□□□□ -0.76
NIPBL-202ENST00000448238 RRP1P56182 461 aaKnown RBP10.3□□□□□ -0.76
NIPBL-202ENST00000448238 IRX4P78413 519 aa10.3□□□□□ -0.76
NIPBL-202ENST00000448238 CEP128Q6ZU80 1094 aa10.3□□□□□ -0.76
NIPBL-202ENST00000448238 PRKRIP1Q9H875 184 aaPredicted RBP10.3□□□□□ -0.76
NIPBL-202ENST00000448238 ZNF287Q9HBT7 754 aa10.3□□□□□ -0.76
NIPBL-202ENST00000448238 ATP2A2P16615 1042 aaKnown RBP10.3□□□□□ -0.76
NIPBL-202ENST00000448238 SSBP05455 408 aaKnown RBP eCLIP10.3□□□□□ -0.76
NIPBL-202ENST00000448238 TOP1P11387 765 aaKnown RBP10.3□□□□□ -0.76
NIPBL-202ENST00000448238 CCDC96Q2M329 555 aa10.3□□□□□ -0.76
NIPBL-202ENST00000448238 DDX27Q96GQ7 796 aaKnown RBP10.3□□□□□ -0.76
NIPBL-202ENST00000448238 CYP46A1Q9Y6A2 500 aa10.3□□□□□ -0.76
NIPBL-202ENST00000448238 TUBBP07437 444 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 CFAP157Q5JU67 520 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 PHAXQ9H814 394 aaKnown RBP10.29□□□□□ -0.76
NIPBL-202ENST00000448238 ARFGAP2Q8N6H7 521 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 BCAP29Q9UHQ4 241 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 MYO10Q9HD67 2058 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 GOLGA3Q08378 1498 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 MCM5P33992 734 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 NEK4P51957 841 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 B4GALNT4Q76KP1 1039 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 PDCD7Q8N8D1 485 aaKnown RBP10.29□□□□□ -0.76
NIPBL-202ENST00000448238 HAUS8Q9BT25 410 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 FSD1Q9BTV5 496 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 POLE3Q9NRF9 147 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 CTAGE5O15320 804 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 ERCC3P19447 782 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 PCK1P35558 622 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 ZSCAN25Q6NSZ9 544 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 ARHGAP24Q8N264 748 aa10.29□□□□□ -0.76
NIPBL-202ENST00000448238 SPATA32Q96LK8 384 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms