RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 TMPOP42166 694 aaKnown RBP10.07□□□□□ -0.8
PTPN3-204ENST00000446349 PYM1Q9BRP8 204 aaKnown RBP10.07□□□□□ -0.8
PTPN3-204ENST00000446349 CBFA2T2O43439 604 aa10.07□□□□□ -0.8
PTPN3-204ENST00000446349 USP5P45974 858 aa10.07□□□□□ -0.8
PTPN3-204ENST00000446349 NBPF1Q3BBV0 1214 aa10.07□□□□□ -0.8
PTPN3-204ENST00000446349 FKBP4Q02790 459 aaKnown RBP eCLIP10.07□□□□□ -0.8
PTPN3-204ENST00000446349 FGFR1OPO95684 399 aaKnown RBP10.07□□□□□ -0.8
PTPN3-204ENST00000446349 PBRM1Q86U86 1689 aa10.07□□□□□ -0.8
PTPN3-204ENST00000446349 TNNT3P45378 269 aaPredicted RBP10.06□□□□□ -0.8
PTPN3-204ENST00000446349 DDX46Q7L014 1031 aaKnown RBP10.06□□□□□ -0.8
PTPN3-204ENST00000446349 IQCA1Q86XH1 822 aa10.06□□□□□ -0.8
PTPN3-204ENST00000446349 NYXQ9GZU5 481 aa10.06□□□□□ -0.8
PTPN3-204ENST00000446349 UGGT2Q9NYU1 1516 aa10.06□□□□□ -0.8
PTPN3-204ENST00000446349 NBPF8Q3BBV2 869 aa10.06□□□□□ -0.8
PTPN3-204ENST00000446349 NBPF14Q5TI25 921 aa10.06□□□□□ -0.8
PTPN3-204ENST00000446349 B4DLN1 442 aa10.06□□□□□ -0.8
PTPN3-204ENST00000446349 MRPL12P52815 198 aaKnown RBP10.06□□□□□ -0.8
PTPN3-204ENST00000446349 PANK1Q8TE04 598 aa10.06□□□□□ -0.8
PTPN3-204ENST00000446349 TRPM2O94759 1503 aa10.06□□□□□ -0.8
PTPN3-204ENST00000446349 PDCL3Q9H2J4 239 aa10.06□□□□□ -0.8
PTPN3-204ENST00000446349 PLEKHH1Q9ULM0 1364 aa10.06□□□□□ -0.8
PTPN3-204ENST00000446349 POLR3DP05423 398 aaPredicted RBP10.06□□□□□ -0.8
PTPN3-204ENST00000446349 KRT85P78386 507 aa10.06□□□□□ -0.8
PTPN3-204ENST00000446349 MKNK2Q9HBH9 465 aa10.06□□□□□ -0.8
PTPN3-204ENST00000446349 SOS1Q07889 1333 aaPredicted RBP10.05□□□□□ -0.8
PTPN3-204ENST00000446349 CETN2P41208 172 aa10.05□□□□□ -0.8
PTPN3-204ENST00000446349 RALGAPBQ86X10 1494 aa10.05□□□□□ -0.8
PTPN3-204ENST00000446349 RFC4P35249 363 aa10.05□□□□□ -0.8
PTPN3-204ENST00000446349 HLA-DOAP06340 250 aa10.05□□□□□ -0.8
PTPN3-204ENST00000446349 NEK4P51957 841 aa10.05□□□□□ -0.8
PTPN3-204ENST00000446349 HSP90B2PQ58FF3 399 aa10.05□□□□□ -0.8
PTPN3-204ENST00000446349 MNS1Q8NEH6 495 aa10.05□□□□□ -0.8
PTPN3-204ENST00000446349 ZNF444Q8N0Y2 327 aaPredicted RBP10.04□□□□□ -0.8
PTPN3-204ENST00000446349 C14orf93Q9H972 538 aaKnown RBP10.04□□□□□ -0.8
PTPN3-204ENST00000446349 HDAC9Q9UKV0 1011 aa10.04□□□□□ -0.8
PTPN3-204ENST00000446349 IL16Q14005 1332 aa10.04□□□□□ -0.8
PTPN3-204ENST00000446349 ADAMTS12P58397 1594 aa10.04□□□□□ -0.8
PTPN3-204ENST00000446349 IDI1Q13907 227 aa10.04□□□□□ -0.8
PTPN3-204ENST00000446349 DUSP27Q5VZP5 1158 aa10.04□□□□□ -0.8
PTPN3-204ENST00000446349 IQCEQ6IPM2 695 aa10.04□□□□□ -0.8
PTPN3-204ENST00000446349 RRS1Q15050 365 aaKnown RBP10.04□□□□□ -0.8
PTPN3-204ENST00000446349 CCDC150Q8NCX0 1101 aa10.04□□□□□ -0.8
PTPN3-204ENST00000446349 CCDC39Q9UFE4 941 aa10.04□□□□□ -0.8
PTPN3-204ENST00000446349 ADAMTS2O95450 1211 aa10.03□□□□□ -0.8
PTPN3-204ENST00000446349 POLD1P28340 1107 aa10.03□□□□□ -0.8
PTPN3-204ENST00000446349 UBAP1LF5GYI3 381 aa10.03□□□□□ -0.8
PTPN3-204ENST00000446349 CTCFLQ8NI51 663 aaPredicted RBP10.03□□□□□ -0.8
PTPN3-204ENST00000446349 MTMR7Q9Y216 660 aa10.03□□□□□ -0.8
PTPN3-204ENST00000446349 KIF5BP33176 963 aa10.03□□□□□ -0.8
PTPN3-204ENST00000446349 CEP57L1Q8IYX8 460 aa10.03□□□□□ -0.8
PTPN3-204ENST00000446349 NAPBQ9H115 298 aa10.03□□□□□ -0.8
PTPN3-204ENST00000446349 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.03□□□□□ -0.8
PTPN3-204ENST00000446349 CWC25Q9NXE8 425 aaPredicted RBP10.03□□□□□ -0.8
PTPN3-204ENST00000446349 TRMT112Q9UI30 125 aaKnown RBP10.03□□□□□ -0.8
PTPN3-204ENST00000446349 KIAA0556O60303 1618 aa10.03□□□□□ -0.8
PTPN3-204ENST00000446349 TMEM266Q2M3C6 531 aa10.03□□□□□ -0.8
PTPN3-204ENST00000446349 CCDC152Q4G0S7 254 aa10.03□□□□□ -0.8
PTPN3-204ENST00000446349 CHD1LQ86WJ1 897 aa10.03□□□□□ -0.8
PTPN3-204ENST00000446349 CAGE1Q8TC20 777 aa10.03□□□□□ -0.8
PTPN3-204ENST00000446349 CABP5Q9NP86 173 aa10.03□□□□□ -0.8
PTPN3-204ENST00000446349 SNRPA1P09661 255 aaKnown RBP10.03□□□□□ -0.8
PTPN3-204ENST00000446349 UQCRFS1P1P0C7P4 283 aa10.03□□□□□ -0.8
PTPN3-204ENST00000446349 SLC4A3P48751 1232 aa10.03□□□□□ -0.8
PTPN3-204ENST00000446349 PIK3R4Q99570 1358 aa10.02□□□□□ -0.8
PTPN3-204ENST00000446349 STXBP4Q6ZWJ1 553 aa10.02□□□□□ -0.8
PTPN3-204ENST00000446349 CAVIN1Q6NZI2 390 aaKnown RBP10.02□□□□□ -0.8
PTPN3-204ENST00000446349 FANCIQ9NVI1 1328 aa10.02□□□□□ -0.81
PTPN3-204ENST00000446349 FOXO3O43524 673 aa10.02□□□□□ -0.81
PTPN3-204ENST00000446349 GSE1Q14687 1217 aa10.02□□□□□ -0.81
PTPN3-204ENST00000446349 PPFIBP1Q86W92 1011 aa10.02□□□□□ -0.81
PTPN3-204ENST00000446349 CIZ1Q9ULV3 898 aaPredicted RBP10.02□□□□□ -0.81
PTPN3-204ENST00000446349 IDH1O75874 414 aaKnown RBP10.02□□□□□ -0.81
PTPN3-204ENST00000446349 LRRC59Q96AG4 307 aaKnown RBP10.02□□□□□ -0.81
PTPN3-204ENST00000446349 SIL1Q9H173 461 aa10.02□□□□□ -0.81
PTPN3-204ENST00000446349 NOS1P29475 1434 aa10.02□□□□□ -0.81
PTPN3-204ENST00000446349 CCDC192P0DO97 292 aa10.02□□□□□ -0.81
PTPN3-204ENST00000446349 NF2P35240 595 aa10.02□□□□□ -0.81
PTPN3-204ENST00000446349 TTLL12Q14166 644 aaPredicted RBP10.02□□□□□ -0.81
PTPN3-204ENST00000446349 FOXD4L6Q3SYB3 417 aaPredicted RBP10.02□□□□□ -0.81
PTPN3-204ENST00000446349 FOXD4L3Q6VB84 417 aaPredicted RBP10.02□□□□□ -0.81
PTPN3-204ENST00000446349 MPRIPQ6WCQ1 1025 aa10.02□□□□□ -0.81
PTPN3-204ENST00000446349 LRRC27Q9C0I9 530 aa10.02□□□□□ -0.81
PTPN3-204ENST00000446349 ABCF2Q9UG63 623 aa10.02□□□□□ -0.81
PTPN3-204ENST00000446349 SMTNL1A8MU46 457 aa10.02□□□□□ -0.81
PTPN3-204ENST00000446349 BAG4O95429 457 aaKnown RBP10.02□□□□□ -0.81
PTPN3-204ENST00000446349 NUP133Q8WUM0 1156 aa10.02□□□□□ -0.81
PTPN3-204ENST00000446349 PDE4BQ07343 736 aa10.01□□□□□ -0.81
PTPN3-204ENST00000446349 GPATCH8Q9UKJ3 1502 aaKnown RBP10.01□□□□□ -0.81
PTPN3-204ENST00000446349 NKTRP30414 1462 aaKnown RBP10.01□□□□□ -0.81
PTPN3-204ENST00000446349 SHANK2Q9UPX8 1470 aa10.01□□□□□ -0.81
PTPN3-204ENST00000446349 BCL11BQ9C0K0 894 aaPredicted RBP10.01□□□□□ -0.81
PTPN3-204ENST00000446349 C19orf44Q9H6X5 657 aa10.01□□□□□ -0.81
PTPN3-204ENST00000446349 RIMS2Q9UQ26 1411 aa10.01□□□□□ -0.81
PTPN3-204ENST00000446349 ZNF397Q8NF99 534 aaPredicted RBP10.01□□□□□ -0.81
PTPN3-204ENST00000446349 SH2B1Q9NRF2 756 aaPredicted RBP10.01□□□□□ -0.81
PTPN3-204ENST00000446349 RPRD2Q5VT52 1461 aaKnown RBP10.01□□□□□ -0.81
PTPN3-204ENST00000446349 HMGN5P82970 282 aaKnown RBP10.01□□□□□ -0.81
PTPN3-204ENST00000446349 UHRF1BP1Q6BDS2 1440 aa10.01□□□□□ -0.81
PTPN3-204ENST00000446349 MTERF4Q7Z6M4 381 aaKnown RBP10.01□□□□□ -0.81
PTPN3-204ENST00000446349 BICDL1Q6ZP65 573 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms