RNA–Protein interactions for RNA: ENST00000439120.1

AC004540.1-201, humanhuman

TSL 2 BASIC

Gene AC004540.1, Length 891 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004540.1-201ENST00000439120 CABP4P57796 275 aa25.04■■□□□ 1.6
AC004540.1-201ENST00000439120 LINC00116Q8NCU8 138 aa25.04■■□□□ 1.6
AC004540.1-201ENST00000439120 IL13P35225 146 aa25.03■■□□□ 1.6
AC004540.1-201ENST00000439120 MTHFSP49914 203 aa25.03■■□□□ 1.6
AC004540.1-201ENST00000439120 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.02■■□□□ 1.6
AC004540.1-201ENST00000439120 SSFA2P28290 1259 aa25.02■■□□□ 1.6
AC004540.1-201ENST00000439120 RBM42Q9BTD8 480 aaKnown RBP25.02■■□□□ 1.6
AC004540.1-201ENST00000439120 GNPATO15228 680 aa25.01■■□□□ 1.59
AC004540.1-201ENST00000439120 ITPK1Q13572 414 aa25.01■■□□□ 1.59
AC004540.1-201ENST00000439120 KDRP35968 1356 aa25.01■■□□□ 1.59
AC004540.1-201ENST00000439120 KDM6AO15550 1401 aaPredicted RBP25.01■■□□□ 1.59
AC004540.1-201ENST00000439120 CHD4Q14839 1912 aa25■■□□□ 1.59
AC004540.1-201ENST00000439120 PER1O15534 1290 aaPredicted RBP25■■□□□ 1.59
AC004540.1-201ENST00000439120 NLGN2Q8NFZ4 835 aa25■■□□□ 1.59
AC004540.1-201ENST00000439120 CNGB1Q14028 1251 aaPredicted RBP24.99■■□□□ 1.59
AC004540.1-201ENST00000439120 AMIGO3Q86WK7 504 aa24.98■■□□□ 1.59
AC004540.1-201ENST00000439120 SMIM5Q71RC9 77 aa24.97■■□□□ 1.59
AC004540.1-201ENST00000439120 UTRNP46939 3433 aa24.97■■□□□ 1.59
AC004540.1-201ENST00000439120 DIAPH1O60610 1272 aaKnown RBP24.96■■□□□ 1.59
AC004540.1-201ENST00000439120 ZNF831Q5JPB2 1677 aa24.95■■□□□ 1.58
AC004540.1-201ENST00000439120 HMOX1P09601 288 aa24.95■■□□□ 1.58
AC004540.1-201ENST00000439120 RTCBQ9Y3I0 505 aaKnown RBP24.94■■□□□ 1.58
AC004540.1-201ENST00000439120 CD2APQ9Y5K6 639 aa24.94■■□□□ 1.58
AC004540.1-201ENST00000439120 AKAP4Q5JQC9 854 aa24.93■■□□□ 1.58
AC004540.1-201ENST00000439120 NFATC2IPQ8NCF5 419 aa24.93■■□□□ 1.58
AC004540.1-201ENST00000439120 SCN11AQ9UI33 1791 aa24.93■■□□□ 1.58
AC004540.1-201ENST00000439120 NPC1L1Q9UHC9 1359 aa24.93■■□□□ 1.58
AC004540.1-201ENST00000439120 PTCD1O75127 700 aaKnown RBP24.92■■□□□ 1.58
AC004540.1-201ENST00000439120 COL5A3P25940 1745 aaPredicted RBP24.92■■□□□ 1.58
AC004540.1-201ENST00000439120 TRAPPC3LQ5T215 181 aa24.91■■□□□ 1.58
AC004540.1-201ENST00000439120 SLC4A9Q96Q91 983 aa24.91■■□□□ 1.58
AC004540.1-201ENST00000439120 ZNF784Q8NCA9 323 aaPredicted RBP24.9■■□□□ 1.58
AC004540.1-201ENST00000439120 GRIN3BO60391 1043 aa24.89■■□□□ 1.58
AC004540.1-201ENST00000439120 RC3H1Q5TC82 1133 aaKnown RBP24.89■■□□□ 1.58
AC004540.1-201ENST00000439120 CNTNAP4Q9C0A0 1308 aa24.88■■□□□ 1.57
AC004540.1-201ENST00000439120 U2SURPO15042 1029 aaKnown RBP24.87■■□□□ 1.57
AC004540.1-201ENST00000439120 ADRA2BP18089 450 aa24.87■■□□□ 1.57
AC004540.1-201ENST00000439120 GOLGB1Q14789 3259 aaKnown RBP24.86■■□□□ 1.57
AC004540.1-201ENST00000439120 YBX3P16989 372 aaKnown RBP eCLIP24.86■■□□□ 1.57
AC004540.1-201ENST00000439120 RFC4P35249 363 aa24.86■■□□□ 1.57
AC004540.1-201ENST00000439120 SLC52A2Q9HAB3 445 aa24.86■■□□□ 1.57
AC004540.1-201ENST00000439120 RPS6KA4O75676 772 aa24.85■■□□□ 1.57
AC004540.1-201ENST00000439120 VIRMAQ69YN4 1812 aaKnown RBP24.84■■□□□ 1.57
AC004540.1-201ENST00000439120 MMP10P09238 476 aa24.84■■□□□ 1.57
AC004540.1-201ENST00000439120 MTHFSDQ2M296 383 aaKnown RBP24.84■■□□□ 1.57
AC004540.1-201ENST00000439120 NLGN1Q8N2Q7 840 aa24.84■■□□□ 1.57
AC004540.1-201ENST00000439120 ARHGEF1Q92888 912 aaKnown RBP24.84■■□□□ 1.57
AC004540.1-201ENST00000439120 LGR6Q9HBX8 967 aa24.84■■□□□ 1.57
AC004540.1-201ENST00000439120 RNMTO43148 476 aaKnown RBP24.83■■□□□ 1.57
AC004540.1-201ENST00000439120 CFAP53Q96M91 514 aa24.83■■□□□ 1.57
AC004540.1-201ENST00000439120 COL3A1P02461 1466 aaPredicted RBP24.83■■□□□ 1.56
AC004540.1-201ENST00000439120 CRKLP46109 303 aaKnown RBP24.82■■□□□ 1.56
AC004540.1-201ENST00000439120 TJP1Q07157 1748 aa24.81■■□□□ 1.56
AC004540.1-201ENST00000439120 MRC1P22897 1456 aa24.81■■□□□ 1.56
AC004540.1-201ENST00000439120 MYH14Q7Z406 1995 aaKnown RBP24.8■■□□□ 1.56
AC004540.1-201ENST00000439120 CICQ96RK0 1608 aaPredicted RBP24.8■■□□□ 1.56
AC004540.1-201ENST00000439120 C4AP0C0L4 1744 aa24.8■■□□□ 1.56
AC004540.1-201ENST00000439120 WWC3Q9ULE0 1092 aa24.78■■□□□ 1.56
AC004540.1-201ENST00000439120 GYS1P13807 737 aa24.77■■□□□ 1.56
AC004540.1-201ENST00000439120 SLC39A6Q13433 755 aa24.77■■□□□ 1.56
AC004540.1-201ENST00000439120 GAS2L2Q8NHY3 880 aa24.77■■□□□ 1.56
AC004540.1-201ENST00000439120 PARP3Q9Y6F1 533 aa24.77■■□□□ 1.56
AC004540.1-201ENST00000439120 ADAMTS7Q9UKP4 1686 aa24.76■■□□□ 1.55
AC004540.1-201ENST00000439120 DNAJC10Q8IXB1 793 aa24.76■■□□□ 1.55
AC004540.1-201ENST00000439120 CCDC87Q9NVE4 849 aa24.75■■□□□ 1.55
AC004540.1-201ENST00000439120 NUDCQ9Y266 331 aa24.75■■□□□ 1.55
AC004540.1-201ENST00000439120 GNAT3A8MTJ3 354 aa24.74■■□□□ 1.55
AC004540.1-201ENST00000439120 TEFQ10587 303 aa24.74■■□□□ 1.55
AC004540.1-201ENST00000439120 TTC5Q8N0Z6 440 aa24.74■■□□□ 1.55
AC004540.1-201ENST00000439120 KIF13BQ9NQT8 1826 aa24.72■■□□□ 1.55
AC004540.1-201ENST00000439120 KCPQ6ZWJ8 1503 aa24.72■■□□□ 1.55
AC004540.1-201ENST00000439120 USP42Q9H9J4 1324 aaKnown RBP24.72■■□□□ 1.55
AC004540.1-201ENST00000439120 INTS5Q6P9B9 1019 aaKnown RBP24.72■■□□□ 1.55
AC004540.1-201ENST00000439120 SRP68Q9UHB9 627 aaKnown RBP24.72■■□□□ 1.55
AC004540.1-201ENST00000439120 ZPR1O75312 459 aa24.71■■□□□ 1.55
AC004540.1-201ENST00000439120 TGFB2P61812 414 aa24.71■■□□□ 1.55
AC004540.1-201ENST00000439120 C10orf71Q711Q0 1435 aa24.7■■□□□ 1.55
AC004540.1-201ENST00000439120 PPP2R1AP30153 589 aa24.7■■□□□ 1.54
AC004540.1-201ENST00000439120 PRKAR2BP31323 418 aa24.7■■□□□ 1.54
AC004540.1-201ENST00000439120 PXDNLA1KZ92 1463 aa24.7■■□□□ 1.54
AC004540.1-201ENST00000439120 N4BP2Q86UW6 1770 aaPredicted RBP24.7■■□□□ 1.54
AC004540.1-201ENST00000439120 CYP19A1P11511 503 aaPredicted RBP24.69■■□□□ 1.54
AC004540.1-201ENST00000439120 VSIG10Q8N0Z9 540 aa24.69■■□□□ 1.54
AC004540.1-201ENST00000439120 UBR2Q8IWV8 1755 aa24.68■■□□□ 1.54
AC004540.1-201ENST00000439120 GIGYF1O75420 1035 aaPredicted RBP24.68■■□□□ 1.54
AC004540.1-201ENST00000439120 U2AF1L5P0DN76 240 aaPredicted RBP24.68■■□□□ 1.54
AC004540.1-201ENST00000439120 U2AF1Q01081 240 aaKnown RBP eCLIP24.68■■□□□ 1.54
AC004540.1-201ENST00000439120 FKBP8Q14318 412 aa24.68■■□□□ 1.54
AC004540.1-201ENST00000439120 SOS1Q07889 1333 aaPredicted RBP24.67■■□□□ 1.54
AC004540.1-201ENST00000439120 RSPH6AQ9H0K4 717 aa24.67■■□□□ 1.54
AC004540.1-201ENST00000439120 A0A0G2JLW4 131 aa24.66■■□□□ 1.54
AC004540.1-201ENST00000439120 IL17REQ8NFR9 667 aa24.66■■□□□ 1.54
AC004540.1-201ENST00000439120 STARD3NLO95772 234 aa24.65■■□□□ 1.54
AC004540.1-201ENST00000439120 USPL1Q5W0Q7 1092 aa24.65■■□□□ 1.54
AC004540.1-201ENST00000439120 KIAA1551Q9HCM1 1747 aa24.65■■□□□ 1.54
AC004540.1-201ENST00000439120 BCS1LQ9Y276 419 aa24.65■■□□□ 1.54
AC004540.1-201ENST00000439120 ZBTB1Q9Y2K1 713 aa24.65■■□□□ 1.54
AC004540.1-201ENST00000439120 COL15A1P39059 1388 aa24.65■■□□□ 1.54
AC004540.1-201ENST00000439120 ATP10DQ9P241 1426 aa24.64■■□□□ 1.54
AC004540.1-201ENST00000439120 ZNF790Q6PG37 636 aa24.64■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms