RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 SPINT1O43278 529 aa4.97□□□□□ -1.61
VPS41-206ENST00000418457 IL2RAP01589 272 aa4.97□□□□□ -1.61
VPS41-206ENST00000418457 CLN3Q13286 438 aa4.97□□□□□ -1.61
VPS41-206ENST00000418457 TRIM46Q7Z4K8 759 aa4.97□□□□□ -1.61
VPS41-206ENST00000418457 RETREG2Q8NC44 543 aa4.97□□□□□ -1.61
VPS41-206ENST00000418457 STK32AQ8WU08 396 aa4.97□□□□□ -1.61
VPS41-206ENST00000418457 XAGE2Q96GT9 111 aa4.97□□□□□ -1.61
VPS41-206ENST00000418457 ESYT1Q9BSJ8 1104 aa4.97□□□□□ -1.61
VPS41-206ENST00000418457 SERTAD1Q9UHV2 236 aa4.97□□□□□ -1.61
VPS41-206ENST00000418457 M0R2N6 131 aa4.96□□□□□ -1.62
VPS41-206ENST00000418457 PDE4CQ08493 712 aa4.96□□□□□ -1.62
VPS41-206ENST00000418457 TLR1Q15399 786 aa4.96□□□□□ -1.62
VPS41-206ENST00000418457 TMEM164Q5U3C3 297 aa4.96□□□□□ -1.62
VPS41-206ENST00000418457 PURBQ96QR8 312 aaKnown RBP4.96□□□□□ -1.62
VPS41-206ENST00000418457 INSM2Q96T92 566 aaPredicted RBP4.96□□□□□ -1.62
VPS41-206ENST00000418457 POLMQ9NP87 494 aaPredicted RBP4.96□□□□□ -1.62
VPS41-206ENST00000418457 ATP13A2Q9NQ11 1180 aa4.96□□□□□ -1.62
VPS41-206ENST00000418457 USTQ9Y2C2 406 aa4.96□□□□□ -1.62
VPS41-206ENST00000418457 GPC1P35052 558 aa4.95□□□□□ -1.62
VPS41-206ENST00000418457 SMTNP53814 917 aa4.95□□□□□ -1.62
VPS41-206ENST00000418457 CENPCQ03188 943 aa4.95□□□□□ -1.62
VPS41-206ENST00000418457 SWI5Q1ZZU3 235 aa4.95□□□□□ -1.62
VPS41-206ENST00000418457 HOMEZQ8IX15 550 aa4.95□□□□□ -1.62
VPS41-206ENST00000418457 TSEN2Q8NCE0 465 aaKnown RBP4.95□□□□□ -1.62
VPS41-206ENST00000418457 ZFP42Q96MM3 310 aa4.95□□□□□ -1.62
VPS41-206ENST00000418457 SLC4A9Q96Q91 983 aa4.95□□□□□ -1.62
VPS41-206ENST00000418457 HINFPQ9BQA5 517 aa4.95□□□□□ -1.62
VPS41-206ENST00000418457 A6NJY4 79 aa4.94□□□□□ -1.62
VPS41-206ENST00000418457 TMEM88BA6NKF7 163 aa4.94□□□□□ -1.62
VPS41-206ENST00000418457 GTF2E1P29083 439 aaPredicted RBP4.94□□□□□ -1.62
VPS41-206ENST00000418457 CTSOP43234 321 aaPredicted RBP4.94□□□□□ -1.62
VPS41-206ENST00000418457 RNF144AP50876 292 aaPredicted RBP4.94□□□□□ -1.62
VPS41-206ENST00000418457 MTFR1Q15390 333 aa4.94□□□□□ -1.62
VPS41-206ENST00000418457 SLC27A3Q5K4L6 730 aa4.94□□□□□ -1.62
VPS41-206ENST00000418457 FOXD4L5Q5VV16 416 aaPredicted RBP4.94□□□□□ -1.62
VPS41-206ENST00000418457 TNS4Q8IZW8 715 aa4.94□□□□□ -1.62
VPS41-206ENST00000418457 ZSCAN10Q96SZ4 725 aaPredicted RBP4.94□□□□□ -1.62
VPS41-206ENST00000418457 DACH1Q9UI36 760 aa4.94□□□□□ -1.62
VPS41-206ENST00000418457 HRH3Q9Y5N1 445 aa4.94□□□□□ -1.62
VPS41-206ENST00000418457 TTLL8A6PVC2 850 aa4.93□□□□□ -1.62
VPS41-206ENST00000418457 EPHA4P54764 986 aa4.93□□□□□ -1.62
VPS41-206ENST00000418457 FAM69CQ0P6D2 419 aa4.93□□□□□ -1.62
VPS41-206ENST00000418457 NBPF15Q8N660 670 aa4.93□□□□□ -1.62
VPS41-206ENST00000418457 FHDC1Q9C0D6 1143 aaPredicted RBP4.93□□□□□ -1.62
VPS41-206ENST00000418457 SENP2Q9HC62 589 aa4.93□□□□□ -1.62
VPS41-206ENST00000418457 SCHIP1Q9P0W5 487 aaPredicted RBP4.93□□□□□ -1.62
VPS41-206ENST00000418457 SOS2Q07890 1332 aaPredicted RBP4.93□□□□□ -1.62
VPS41-206ENST00000418457 CARNS1A5YM72 827 aa4.92□□□□□ -1.62
VPS41-206ENST00000418457 FIGNL2A6NMB9 653 aa4.92□□□□□ -1.62
VPS41-206ENST00000418457 CDK2AP1O14519 115 aa4.92□□□□□ -1.62
VPS41-206ENST00000418457 LGR5O75473 907 aa4.92□□□□□ -1.62
VPS41-206ENST00000418457 TMEM214Q6NUQ4 689 aaKnown RBP4.92□□□□□ -1.62
VPS41-206ENST00000418457 LYSMD3Q7Z3D4 306 aa4.92□□□□□ -1.62
VPS41-206ENST00000418457 PPARGC1BQ86YN6 1023 aaKnown RBP4.92□□□□□ -1.62
VPS41-206ENST00000418457 RNF217Q8TC41 542 aa4.92□□□□□ -1.62
VPS41-206ENST00000418457 CLP1Q92989 425 aaKnown RBP4.92□□□□□ -1.62
VPS41-206ENST00000418457 KIFC2Q96AC6 838 aa4.92□□□□□ -1.62
VPS41-206ENST00000418457 GRIP2Q9C0E4 1043 aa4.92□□□□□ -1.62
VPS41-206ENST00000418457 TSPAN10Q9H1Z9 355 aaPredicted RBP4.92□□□□□ -1.62
VPS41-206ENST00000418457 MAN1A2O60476 641 aa4.91□□□□□ -1.62
VPS41-206ENST00000418457 PRMT3O60678 531 aa4.91□□□□□ -1.62
VPS41-206ENST00000418457 PDIA4P13667 645 aaKnown RBP4.91□□□□□ -1.62
VPS41-206ENST00000418457 FOXK2Q01167 660 aa4.91□□□□□ -1.62
VPS41-206ENST00000418457 GNASQ5JWF2 1037 aa4.91□□□□□ -1.62
VPS41-206ENST00000418457 SLC9A9Q8IVB4 645 aa4.91□□□□□ -1.62
VPS41-206ENST00000418457 GAS2L2Q8NHY3 880 aa4.91□□□□□ -1.62
VPS41-206ENST00000418457 RHBDD1Q8TEB9 315 aa4.91□□□□□ -1.62
VPS41-206ENST00000418457 SCG3Q8WXD2 468 aaKnown RBP4.91□□□□□ -1.62
VPS41-206ENST00000418457 PRIMPOLQ96LW4 560 aa4.91□□□□□ -1.62
VPS41-206ENST00000418457 IQSEC3Q9UPP2 1182 aaPredicted RBP4.91□□□□□ -1.62
VPS41-206ENST00000418457 ATAD2Q6PL18 1390 aa4.91□□□□□ -1.62
VPS41-206ENST00000418457 SPATA31C2B4DYI2 1134 aa4.9□□□□□ -1.63
VPS41-206ENST00000418457 LCE2BO14633 110 aa4.9□□□□□ -1.63
VPS41-206ENST00000418457 PPP1R12BO60237 982 aaPredicted RBP4.9□□□□□ -1.63
VPS41-206ENST00000418457 IGFBP4P22692 258 aa4.9□□□□□ -1.63
VPS41-206ENST00000418457 ATP2B4P23634 1241 aa4.9□□□□□ -1.63
VPS41-206ENST00000418457 WEE1P30291 646 aa4.9□□□□□ -1.63
VPS41-206ENST00000418457 PSMA6P60900 246 aaKnown RBP4.9□□□□□ -1.63
VPS41-206ENST00000418457 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.9□□□□□ -1.63
VPS41-206ENST00000418457 TBCELQ5QJ74 424 aa4.9□□□□□ -1.63
VPS41-206ENST00000418457 B4GALNT3Q6L9W6 998 aa4.9□□□□□ -1.63
VPS41-206ENST00000418457 PRICKLE2Q7Z3G6 844 aa4.9□□□□□ -1.63
VPS41-206ENST00000418457 CHMP7Q8WUX9 453 aaPredicted RBP4.9□□□□□ -1.63
VPS41-206ENST00000418457 TRIM47Q96LD4 638 aa4.9□□□□□ -1.63
VPS41-206ENST00000418457 TRAIPQ9BWF2 469 aa4.9□□□□□ -1.63
VPS41-206ENST00000418457 NIFKQ9BYG3 293 aaKnown RBP4.9□□□□□ -1.63
VPS41-206ENST00000418457 CABP1Q9NZU7 370 aa4.9□□□□□ -1.63
VPS41-206ENST00000418457 GMPR2Q9P2T1 348 aaKnown RBP4.9□□□□□ -1.63
VPS41-206ENST00000418457 DNMT3LQ9UJW3 386 aa4.9□□□□□ -1.63
VPS41-206ENST00000418457 CHMP3Q9Y3E7 222 aa4.9□□□□□ -1.63
VPS41-206ENST00000418457 USP3Q9Y6I4 520 aa4.9□□□□□ -1.63
VPS41-206ENST00000418457 FOXO3O43524 673 aa4.89□□□□□ -1.63
VPS41-206ENST00000418457 RHOQP17081 205 aa4.89□□□□□ -1.63
VPS41-206ENST00000418457 POU4F2Q12837 409 aa4.89□□□□□ -1.63
VPS41-206ENST00000418457 C4orf17Q53FE4 359 aa4.89□□□□□ -1.63
VPS41-206ENST00000418457 TAS1R3Q7RTX0 852 aa4.89□□□□□ -1.63
VPS41-206ENST00000418457 CXXC1Q9P0U4 656 aaPredicted RBP4.89□□□□□ -1.63
VPS41-206ENST00000418457 SLAIN2Q9P270 581 aa4.89□□□□□ -1.63
VPS41-206ENST00000418457 SERTM1A2A2V5 107 aa4.88□□□□□ -1.63
VPS41-206ENST00000418457 SOBPA7XYQ1 873 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms