RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 IL17REQ8NFR9 667 aa12.16□□□□□ -0.46
SS18-203ENST00000415083 CRYBG1Q9Y4K1 1723 aa12.16□□□□□ -0.46
SS18-203ENST00000415083 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.16□□□□□ -0.46
SS18-203ENST00000415083 TSPYL4Q9UJ04 414 aa12.16□□□□□ -0.46
SS18-203ENST00000415083 ISY1Q9ULR0 285 aaKnown RBP12.16□□□□□ -0.46
SS18-203ENST00000415083 TCHHQ07283 1943 aa12.16□□□□□ -0.46
SS18-203ENST00000415083 NECTIN2Q92692 538 aa12.15□□□□□ -0.46
SS18-203ENST00000415083 RBSNQ9H1K0 784 aa12.15□□□□□ -0.46
SS18-203ENST00000415083 FLT4P35916 1363 aa12.15□□□□□ -0.46
SS18-203ENST00000415083 SKOR2Q2VWA4 1001 aaPredicted RBP12.15□□□□□ -0.46
SS18-203ENST00000415083 ZSCAN23Q3MJ62 389 aa12.15□□□□□ -0.46
SS18-203ENST00000415083 LTN1O94822 1766 aa12.15□□□□□ -0.46
SS18-203ENST00000415083 ARHGAP23Q9P227 1491 aa12.15□□□□□ -0.46
SS18-203ENST00000415083 HSP90AA1P07900 732 aaKnown RBP12.15□□□□□ -0.46
SS18-203ENST00000415083 ZNF445P59923 1031 aa12.15□□□□□ -0.46
SS18-203ENST00000415083 MED1Q15648 1581 aaPredicted RBP12.14□□□□□ -0.47
SS18-203ENST00000415083 SLIT1O75093 1534 aa12.14□□□□□ -0.47
SS18-203ENST00000415083 KDM3BQ7LBC6 1761 aa12.14□□□□□ -0.47
SS18-203ENST00000415083 ERC2O15083 957 aa12.14□□□□□ -0.47
SS18-203ENST00000415083 FLIIQ13045 1269 aa12.14□□□□□ -0.47
SS18-203ENST00000415083 ESYT1Q9BSJ8 1104 aa12.14□□□□□ -0.47
SS18-203ENST00000415083 TMEM63CQ9P1W3 806 aa12.14□□□□□ -0.47
SS18-203ENST00000415083 DDX49Q9Y6V7 483 aaKnown RBP12.14□□□□□ -0.47
SS18-203ENST00000415083 USP44Q9H0E7 712 aa12.13□□□□□ -0.47
SS18-203ENST00000415083 CAVIN1Q6NZI2 390 aaKnown RBP12.13□□□□□ -0.47
SS18-203ENST00000415083 IL17RAQ96F46 866 aa12.13□□□□□ -0.47
SS18-203ENST00000415083 TMX3Q96JJ7 454 aa12.13□□□□□ -0.47
SS18-203ENST00000415083 AMOTL2Q9Y2J4 779 aa12.13□□□□□ -0.47
SS18-203ENST00000415083 CHMLP26374 656 aa12.12□□□□□ -0.47
SS18-203ENST00000415083 PRIM1P49642 420 aaKnown RBP12.12□□□□□ -0.47
SS18-203ENST00000415083 ATP8B2P98198 1209 aa12.12□□□□□ -0.47
SS18-203ENST00000415083 PHAXQ9H814 394 aaKnown RBP12.12□□□□□ -0.47
SS18-203ENST00000415083 CCT4P50991 539 aaKnown RBP12.12□□□□□ -0.47
SS18-203ENST00000415083 NUTM2GQ5VZR2 741 aa12.12□□□□□ -0.47
SS18-203ENST00000415083 PRPF40AO75400 957 aaKnown RBP12.11□□□□□ -0.47
SS18-203ENST00000415083 CUL4AQ13619 759 aa12.11□□□□□ -0.47
SS18-203ENST00000415083 LRRFIP2Q9Y608 721 aaKnown RBP12.11□□□□□ -0.47
SS18-203ENST00000415083 TTC21AQ8NDW8 1320 aa12.11□□□□□ -0.47
SS18-203ENST00000415083 GNAI2P04899 355 aa12.11□□□□□ -0.47
SS18-203ENST00000415083 HOXC9P31274 260 aa12.11□□□□□ -0.47
SS18-203ENST00000415083 STAP2Q9UGK3 403 aa12.11□□□□□ -0.47
SS18-203ENST00000415083 SETD1BQ9UPS6 1966 aaKnown RBP12.11□□□□□ -0.47
SS18-203ENST00000415083 NASPP49321 788 aaPredicted RBP12.11□□□□□ -0.47
SS18-203ENST00000415083 FOXD4L5Q5VV16 416 aaPredicted RBP12.11□□□□□ -0.47
SS18-203ENST00000415083 FOXD4L4Q8WXT5 416 aaPredicted RBP12.11□□□□□ -0.47
SS18-203ENST00000415083 MX1P20591 662 aa12.1□□□□□ -0.47
SS18-203ENST00000415083 NUCB2P80303 420 aa12.1□□□□□ -0.47
SS18-203ENST00000415083 USHBP1Q8N6Y0 703 aa12.1□□□□□ -0.47
SS18-203ENST00000415083 PDLIM2Q96JY6 352 aa12.1□□□□□ -0.47
SS18-203ENST00000415083 PXDNLA1KZ92 1463 aa12.1□□□□□ -0.47
SS18-203ENST00000415083 NEK4P51957 841 aa12.09□□□□□ -0.47
SS18-203ENST00000415083 BRD1O95696 1058 aa12.09□□□□□ -0.47
SS18-203ENST00000415083 PI4K2BQ8TCG2 481 aa12.09□□□□□ -0.47
SS18-203ENST00000415083 LRRCC1Q9C099 1032 aa12.09□□□□□ -0.47
SS18-203ENST00000415083 CWC22Q9HCG8 908 aaKnown RBP12.09□□□□□ -0.47
SS18-203ENST00000415083 NFAT5O94916 1531 aa12.09□□□□□ -0.47
SS18-203ENST00000415083 KCNQ3O43525 872 aa12.08□□□□□ -0.48
SS18-203ENST00000415083 DTNBO60941 627 aa12.08□□□□□ -0.48
SS18-203ENST00000415083 COL9A3Q14050 684 aaPredicted RBP12.08□□□□□ -0.48
SS18-203ENST00000415083 RPAP1Q9BWH6 1393 aaPredicted RBP12.08□□□□□ -0.48
SS18-203ENST00000415083 REC8O95072 547 aa12.08□□□□□ -0.48
SS18-203ENST00000415083 FKBP5Q13451 457 aaPredicted RBP12.08□□□□□ -0.48
SS18-203ENST00000415083 IL1RAPL2Q9NP60 686 aa12.08□□□□□ -0.48
SS18-203ENST00000415083 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.08□□□□□ -0.48
SS18-203ENST00000415083 POLA2Q14181 598 aa12.08□□□□□ -0.48
SS18-203ENST00000415083 CEMIPQ8WUJ3 1361 aa12.07□□□□□ -0.48
SS18-203ENST00000415083 MAP3K5Q99683 1374 aa12.07□□□□□ -0.48
SS18-203ENST00000415083 GNAT3A8MTJ3 354 aa12.07□□□□□ -0.48
SS18-203ENST00000415083 MAP4K4O95819 1239 aaPredicted RBP12.07□□□□□ -0.48
SS18-203ENST00000415083 CCDC173Q0VFZ6 552 aa12.07□□□□□ -0.48
SS18-203ENST00000415083 NUTM1Q86Y26 1132 aa12.07□□□□□ -0.48
SS18-203ENST00000415083 SSH3Q8TE77 659 aa12.07□□□□□ -0.48
SS18-203ENST00000415083 SOS1Q07889 1333 aaPredicted RBP12.07□□□□□ -0.48
SS18-203ENST00000415083 LMO7Q8WWI1 1683 aa12.07□□□□□ -0.48
SS18-203ENST00000415083 ST18O60284 1047 aa12.07□□□□□ -0.48
SS18-203ENST00000415083 PTMSP20962 102 aa12.07□□□□□ -0.48
SS18-203ENST00000415083 LGR6Q9HBX8 967 aa12.07□□□□□ -0.48
SS18-203ENST00000415083 GADD45BO75293 160 aaPredicted RBP12.07□□□□□ -0.48
SS18-203ENST00000415083 NBPF7P0C2Y1 421 aaPredicted RBP12.07□□□□□ -0.48
SS18-203ENST00000415083 HDGFP51858 240 aaKnown RBP12.07□□□□□ -0.48
SS18-203ENST00000415083 NOL8Q76FK4 1167 aaKnown RBP12.07□□□□□ -0.48
SS18-203ENST00000415083 RTF1Q92541 710 aaKnown RBP12.07□□□□□ -0.48
SS18-203ENST00000415083 UPF3BQ9BZI7 483 aaKnown RBP12.07□□□□□ -0.48
SS18-203ENST00000415083 HMMRO75330 724 aa12.06□□□□□ -0.48
SS18-203ENST00000415083 AMPHP49418 695 aa12.06□□□□□ -0.48
SS18-203ENST00000415083 HAP1P54257 671 aaPredicted RBP12.06□□□□□ -0.48
SS18-203ENST00000415083 HTATSF1O43719 755 aaKnown RBP12.06□□□□□ -0.48
SS18-203ENST00000415083 RASEFQ8IZ41 740 aa12.05□□□□□ -0.48
SS18-203ENST00000415083 RILPL2Q969X0 211 aa12.05□□□□□ -0.48
SS18-203ENST00000415083 SYCE3A1L190 88 aa12.05□□□□□ -0.48
SS18-203ENST00000415083 NCLP19338 710 aaKnown RBP12.05□□□□□ -0.48
SS18-203ENST00000415083 NLRP6P59044 892 aa12.05□□□□□ -0.48
SS18-203ENST00000415083 CCDC30Q5VVM6 783 aa12.05□□□□□ -0.48
SS18-203ENST00000415083 TBX22Q9Y458 520 aa12.05□□□□□ -0.48
SS18-203ENST00000415083 SIPA1L3O60292 1781 aaPredicted RBP12.05□□□□□ -0.48
SS18-203ENST00000415083 ADCY9O60503 1353 aa12.05□□□□□ -0.48
SS18-203ENST00000415083 PLEKHG5O94827 1062 aa12.05□□□□□ -0.48
SS18-203ENST00000415083 GDPD2Q9HCC8 539 aa12.05□□□□□ -0.48
SS18-203ENST00000415083 PXDNQ92626 1479 aa12.04□□□□□ -0.48
SS18-203ENST00000415083 ANXA1P04083 346 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms