RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 CHD4Q14839 1912 aa30.32■■■□□ 2.44
MSH6-202ENST00000411819 ERVV-2B6SEH9 535 aa30.32■■■□□ 2.44
MSH6-202ENST00000411819 GPR162Q16538 588 aa30.32■■■□□ 2.44
MSH6-202ENST00000411819 PELP1Q8IZL8 1130 aaKnown RBP30.32■■■□□ 2.44
MSH6-202ENST00000411819 KDRP35968 1356 aa30.31■■■□□ 2.44
MSH6-202ENST00000411819 ITPK1Q13572 414 aa30.31■■■□□ 2.44
MSH6-202ENST00000411819 SMIM5Q71RC9 77 aa30.31■■■□□ 2.44
MSH6-202ENST00000411819 AMIGO3Q86WK7 504 aa30.31■■■□□ 2.44
MSH6-202ENST00000411819 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP30.3■■■□□ 2.44
MSH6-202ENST00000411819 MTHFSP49914 203 aa30.3■■■□□ 2.44
MSH6-202ENST00000411819 NLGN2Q8NFZ4 835 aa30.3■■■□□ 2.44
MSH6-202ENST00000411819 PER1O15534 1290 aaPredicted RBP30.29■■■□□ 2.44
MSH6-202ENST00000411819 CABP4P57796 275 aa30.29■■■□□ 2.44
MSH6-202ENST00000411819 CNGB1Q14028 1251 aaPredicted RBP30.29■■■□□ 2.44
MSH6-202ENST00000411819 RBM42Q9BTD8 480 aaKnown RBP30.29■■■□□ 2.44
MSH6-202ENST00000411819 UTRNP46939 3433 aa30.29■■■□□ 2.44
MSH6-202ENST00000411819 GNPATO15228 680 aa30.28■■■□□ 2.44
MSH6-202ENST00000411819 SSFA2P28290 1259 aa30.28■■■□□ 2.44
MSH6-202ENST00000411819 ZNF831Q5JPB2 1677 aa30.25■■■□□ 2.43
MSH6-202ENST00000411819 SCN11AQ9UI33 1791 aa30.24■■■□□ 2.43
MSH6-202ENST00000411819 COL5A3P25940 1745 aaPredicted RBP30.24■■■□□ 2.43
MSH6-202ENST00000411819 HMOX1P09601 288 aa30.23■■■□□ 2.43
MSH6-202ENST00000411819 DIAPH1O60610 1272 aaKnown RBP30.2■■■□□ 2.43
MSH6-202ENST00000411819 SLC4A9Q96Q91 983 aa30.2■■■□□ 2.43
MSH6-202ENST00000411819 NPC1L1Q9UHC9 1359 aa30.19■■■□□ 2.42
MSH6-202ENST00000411819 NFATC2IPQ8NCF5 419 aa30.19■■■□□ 2.42
MSH6-202ENST00000411819 VIRMAQ69YN4 1812 aaKnown RBP30.19■■■□□ 2.42
MSH6-202ENST00000411819 AKAP4Q5JQC9 854 aa30.18■■■□□ 2.42
MSH6-202ENST00000411819 PTCD1O75127 700 aaKnown RBP30.17■■■□□ 2.42
MSH6-202ENST00000411819 RTCBQ9Y3I0 505 aaKnown RBP30.17■■■□□ 2.42
MSH6-202ENST00000411819 CD2APQ9Y5K6 639 aa30.17■■■□□ 2.42
MSH6-202ENST00000411819 ZNF784Q8NCA9 323 aaPredicted RBP30.15■■■□□ 2.42
MSH6-202ENST00000411819 COL3A1P02461 1466 aaPredicted RBP30.14■■■□□ 2.42
MSH6-202ENST00000411819 CNTNAP4Q9C0A0 1308 aa30.14■■■□□ 2.42
MSH6-202ENST00000411819 YBX3P16989 372 aaKnown RBP eCLIP30.13■■■□□ 2.41
MSH6-202ENST00000411819 TRAPPC3LQ5T215 181 aa30.13■■■□□ 2.41
MSH6-202ENST00000411819 TJP1Q07157 1748 aa30.13■■■□□ 2.41
MSH6-202ENST00000411819 RC3H1Q5TC82 1133 aaKnown RBP30.12■■■□□ 2.41
MSH6-202ENST00000411819 MYH14Q7Z406 1995 aaKnown RBP30.12■■■□□ 2.41
MSH6-202ENST00000411819 U2SURPO15042 1029 aaKnown RBP30.11■■■□□ 2.41
MSH6-202ENST00000411819 GOLGB1Q14789 3259 aaKnown RBP30.11■■■□□ 2.41
MSH6-202ENST00000411819 C4AP0C0L4 1744 aa30.1■■■□□ 2.41
MSH6-202ENST00000411819 SLC52A2Q9HAB3 445 aa30.1■■■□□ 2.41
MSH6-202ENST00000411819 MRC1P22897 1456 aa30.1■■■□□ 2.41
MSH6-202ENST00000411819 CICQ96RK0 1608 aaPredicted RBP30.1■■■□□ 2.41
MSH6-202ENST00000411819 GRIN3BO60391 1043 aa30.09■■■□□ 2.41
MSH6-202ENST00000411819 MTHFSDQ2M296 383 aaKnown RBP30.09■■■□□ 2.41
MSH6-202ENST00000411819 LGR6Q9HBX8 967 aa30.09■■■□□ 2.41
MSH6-202ENST00000411819 RNMTO43148 476 aaKnown RBP30.08■■■□□ 2.41
MSH6-202ENST00000411819 ADRA2BP18089 450 aa30.08■■■□□ 2.41
MSH6-202ENST00000411819 RPS6KA4O75676 772 aa30.07■■■□□ 2.4
MSH6-202ENST00000411819 MMP10P09238 476 aa30.07■■■□□ 2.4
MSH6-202ENST00000411819 ARHGEF1Q92888 912 aaKnown RBP30.07■■■□□ 2.4
MSH6-202ENST00000411819 RFC4P35249 363 aa30.06■■■□□ 2.4
MSH6-202ENST00000411819 CRKLP46109 303 aaKnown RBP30.06■■■□□ 2.4
MSH6-202ENST00000411819 ADAMTS7Q9UKP4 1686 aa30.06■■■□□ 2.4
MSH6-202ENST00000411819 WWC3Q9ULE0 1092 aa30.05■■■□□ 2.4
MSH6-202ENST00000411819 NLGN1Q8N2Q7 840 aa30.03■■■□□ 2.4
MSH6-202ENST00000411819 SLC39A6Q13433 755 aa30.02■■■□□ 2.4
MSH6-202ENST00000411819 CFAP53Q96M91 514 aa30.02■■■□□ 2.4
MSH6-202ENST00000411819 GYS1P13807 737 aa30.01■■■□□ 2.39
MSH6-202ENST00000411819 KIF13BQ9NQT8 1826 aa30■■■□□ 2.39
MSH6-202ENST00000411819 DNAJC10Q8IXB1 793 aa29.99■■■□□ 2.39
MSH6-202ENST00000411819 KCPQ6ZWJ8 1503 aa29.99■■■□□ 2.39
MSH6-202ENST00000411819 GAS2L2Q8NHY3 880 aa29.97■■■□□ 2.39
MSH6-202ENST00000411819 N4BP2Q86UW6 1770 aaPredicted RBP29.96■■■□□ 2.39
MSH6-202ENST00000411819 UBR2Q8IWV8 1755 aa29.96■■■□□ 2.39
MSH6-202ENST00000411819 SRP68Q9UHB9 627 aaKnown RBP29.96■■■□□ 2.39
MSH6-202ENST00000411819 INTS5Q6P9B9 1019 aaKnown RBP29.95■■■□□ 2.39
MSH6-202ENST00000411819 CCDC87Q9NVE4 849 aa29.95■■■□□ 2.39
MSH6-202ENST00000411819 PARP3Q9Y6F1 533 aa29.95■■■□□ 2.39
MSH6-202ENST00000411819 C10orf71Q711Q0 1435 aa29.95■■■□□ 2.38
MSH6-202ENST00000411819 USP42Q9H9J4 1324 aaKnown RBP29.95■■■□□ 2.38
MSH6-202ENST00000411819 PXDNLA1KZ92 1463 aa29.94■■■□□ 2.38
MSH6-202ENST00000411819 KIAA1551Q9HCM1 1747 aa29.94■■■□□ 2.38
MSH6-202ENST00000411819 GNAT3A8MTJ3 354 aa29.94■■■□□ 2.38
MSH6-202ENST00000411819 TEFQ10587 303 aa29.93■■■□□ 2.38
MSH6-202ENST00000411819 TTC5Q8N0Z6 440 aa29.93■■■□□ 2.38
MSH6-202ENST00000411819 PPP2R1AP30153 589 aa29.92■■■□□ 2.38
MSH6-202ENST00000411819 PRKAR2BP31323 418 aa29.92■■■□□ 2.38
MSH6-202ENST00000411819 NUDCQ9Y266 331 aa29.92■■■□□ 2.38
MSH6-202ENST00000411819 SIPA1L3O60292 1781 aaPredicted RBP29.9■■■□□ 2.38
MSH6-202ENST00000411819 CYP19A1P11511 503 aaPredicted RBP29.9■■■□□ 2.38
MSH6-202ENST00000411819 FKBP8Q14318 412 aa29.89■■■□□ 2.38
MSH6-202ENST00000411819 RSPH6AQ9H0K4 717 aa29.89■■■□□ 2.38
MSH6-202ENST00000411819 SOS1Q07889 1333 aaPredicted RBP29.89■■■□□ 2.38
MSH6-202ENST00000411819 ZPR1O75312 459 aa29.88■■■□□ 2.37
MSH6-202ENST00000411819 TGFB2P61812 414 aa29.88■■■□□ 2.37
MSH6-202ENST00000411819 IL17REQ8NFR9 667 aa29.88■■■□□ 2.37
MSH6-202ENST00000411819 COL15A1P39059 1388 aa29.88■■■□□ 2.37
MSH6-202ENST00000411819 U2AF1L5P0DN76 240 aaPredicted RBP29.87■■■□□ 2.37
MSH6-202ENST00000411819 U2AF1Q01081 240 aaKnown RBP eCLIP29.87■■■□□ 2.37
MSH6-202ENST00000411819 VSIG10Q8N0Z9 540 aa29.87■■■□□ 2.37
MSH6-202ENST00000411819 PHACTR3Q96KR7 559 aa29.87■■■□□ 2.37
MSH6-202ENST00000411819 ZBTB1Q9Y2K1 713 aa29.87■■■□□ 2.37
MSH6-202ENST00000411819 ATP10DQ9P241 1426 aa29.87■■■□□ 2.37
MSH6-202ENST00000411819 A0A0G2JLW4 131 aa29.86■■■□□ 2.37
MSH6-202ENST00000411819 GIGYF1O75420 1035 aaPredicted RBP29.86■■■□□ 2.37
MSH6-202ENST00000411819 USPL1Q5W0Q7 1092 aa29.85■■■□□ 2.37
MSH6-202ENST00000411819 DDR1Q08345 913 aa29.84■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms