RNA–Protein interactions for RNA: ENST00000403408.2

SPTLC1P3-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 3, humanhuman

BASIC

Gene SPTLC1P3, Length 259 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P3-201ENST00000403408 C10orf71Q711Q0 1435 aa16.72■□□□□ 0.27
SPTLC1P3-201ENST00000403408 APLP1P51693 650 aa16.72■□□□□ 0.27
SPTLC1P3-201ENST00000403408 KIF24Q5T7B8 1368 aa16.72■□□□□ 0.27
SPTLC1P3-201ENST00000403408 MYH14Q7Z406 1995 aaKnown RBP16.71■□□□□ 0.27
SPTLC1P3-201ENST00000403408 EYA1Q99502 592 aa16.71■□□□□ 0.27
SPTLC1P3-201ENST00000403408 KDRP35968 1356 aa16.71■□□□□ 0.27
SPTLC1P3-201ENST00000403408 TONSLQ96HA7 1378 aa16.71■□□□□ 0.27
SPTLC1P3-201ENST00000403408 ANKRD26Q9UPS8 1709 aa16.7■□□□□ 0.26
SPTLC1P3-201ENST00000403408 TOMM70O94826 608 aa16.7■□□□□ 0.26
SPTLC1P3-201ENST00000403408 DPEP1P16444 411 aa16.7■□□□□ 0.26
SPTLC1P3-201ENST00000403408 KCNA3P22001 575 aa16.7■□□□□ 0.26
SPTLC1P3-201ENST00000403408 ATP6V1AP38606 617 aa16.7■□□□□ 0.26
SPTLC1P3-201ENST00000403408 BCS1LQ9Y276 419 aa16.7■□□□□ 0.26
SPTLC1P3-201ENST00000403408 PHKG2P15735 406 aa16.69■□□□□ 0.26
SPTLC1P3-201ENST00000403408 TMOD3Q9NYL9 352 aa16.69■□□□□ 0.26
SPTLC1P3-201ENST00000403408 WDR90Q96KV7 1748 aa16.69■□□□□ 0.26
SPTLC1P3-201ENST00000403408 GYS1P13807 737 aa16.67■□□□□ 0.26
SPTLC1P3-201ENST00000403408 HMGB2P26583 209 aaKnown RBP16.67■□□□□ 0.26
SPTLC1P3-201ENST00000403408 TGFB2P61812 414 aa16.67■□□□□ 0.26
SPTLC1P3-201ENST00000403408 COL13A1Q5TAT6 717 aaPredicted RBP16.67■□□□□ 0.26
SPTLC1P3-201ENST00000403408 ARHGAP27Q6ZUM4 889 aa16.67■□□□□ 0.26
SPTLC1P3-201ENST00000403408 ARHGEF1Q92888 912 aaKnown RBP16.67■□□□□ 0.26
SPTLC1P3-201ENST00000403408 SPG7Q9UQ90 795 aa16.67■□□□□ 0.26
SPTLC1P3-201ENST00000403408 C4AP0C0L4 1744 aa16.67■□□□□ 0.26
SPTLC1P3-201ENST00000403408 COL5A3P25940 1745 aaPredicted RBP16.67■□□□□ 0.26
SPTLC1P3-201ENST00000403408 WASHC2AQ641Q2 1341 aa16.67■□□□□ 0.26
SPTLC1P3-201ENST00000403408 PPM1GO15355 546 aaPredicted RBP16.65■□□□□ 0.26
SPTLC1P3-201ENST00000403408 TMF1P82094 1093 aa16.65■□□□□ 0.26
SPTLC1P3-201ENST00000403408 C9orf131Q5VYM1 1079 aa16.65■□□□□ 0.26
SPTLC1P3-201ENST00000403408 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.65■□□□□ 0.26
SPTLC1P3-201ENST00000403408 ARFGEF1Q9Y6D6 1849 aa16.65■□□□□ 0.26
SPTLC1P3-201ENST00000403408 FCHSD2O94868 740 aa16.64■□□□□ 0.25
SPTLC1P3-201ENST00000403408 TRAPPC3LQ5T215 181 aa16.64■□□□□ 0.25
SPTLC1P3-201ENST00000403408 IFNL2Q8IZJ0 200 aa16.64■□□□□ 0.25
SPTLC1P3-201ENST00000403408 POLKQ9UBT6 870 aa16.64■□□□□ 0.25
SPTLC1P3-201ENST00000403408 ZNF831Q5JPB2 1677 aa16.63■□□□□ 0.25
SPTLC1P3-201ENST00000403408 NLGN1Q8N2Q7 840 aa16.63■□□□□ 0.25
SPTLC1P3-201ENST00000403408 JMYQ8N9B5 988 aa16.63■□□□□ 0.25
SPTLC1P3-201ENST00000403408 RBM46Q8TBY0 533 aaKnown RBP16.63■□□□□ 0.25
SPTLC1P3-201ENST00000403408 RTCBQ9Y3I0 505 aaKnown RBP16.63■□□□□ 0.25
SPTLC1P3-201ENST00000403408 KCPQ6ZWJ8 1503 aa16.63■□□□□ 0.25
SPTLC1P3-201ENST00000403408 SBF1O95248 1867 aa16.63■□□□□ 0.25
SPTLC1P3-201ENST00000403408 EIF4A2Q14240 407 aaKnown RBP16.62■□□□□ 0.25
SPTLC1P3-201ENST00000403408 KLRG1Q96E93 195 aa16.62■□□□□ 0.25
SPTLC1P3-201ENST00000403408 SLC24A1O60721 1099 aa16.61■□□□□ 0.25
SPTLC1P3-201ENST00000403408 RPS6KA4O75676 772 aa16.61■□□□□ 0.25
SPTLC1P3-201ENST00000403408 DDR1Q08345 913 aa16.61■□□□□ 0.25
SPTLC1P3-201ENST00000403408 RC3H1Q5TC82 1133 aaKnown RBP16.61■□□□□ 0.25
SPTLC1P3-201ENST00000403408 RBM42Q9BTD8 480 aaKnown RBP16.61■□□□□ 0.25
SPTLC1P3-201ENST00000403408 SRP68Q9UHB9 627 aaKnown RBP16.61■□□□□ 0.25
SPTLC1P3-201ENST00000403408 CNTNAP4Q9C0A0 1308 aa16.61■□□□□ 0.25
SPTLC1P3-201ENST00000403408 KDM6AO15550 1401 aaPredicted RBP16.61■□□□□ 0.25
SPTLC1P3-201ENST00000403408 DCAF5Q96JK2 942 aa16.6■□□□□ 0.25
SPTLC1P3-201ENST00000403408 CCDC87Q9NVE4 849 aa16.6■□□□□ 0.25
SPTLC1P3-201ENST00000403408 ADAMTS7Q9UKP4 1686 aa16.59■□□□□ 0.25
SPTLC1P3-201ENST00000403408 FKBP8Q14318 412 aa16.59■□□□□ 0.25
SPTLC1P3-201ENST00000403408 CHRNA5P30532 468 aa16.58■□□□□ 0.24
SPTLC1P3-201ENST00000403408 PRELPP51888 382 aa16.58■□□□□ 0.24
SPTLC1P3-201ENST00000403408 RRAGCQ9HB90 399 aa16.58■□□□□ 0.24
SPTLC1P3-201ENST00000403408 ERVV-2B6SEH9 535 aa16.57■□□□□ 0.24
SPTLC1P3-201ENST00000403408 RFC4P35249 363 aa16.57■□□□□ 0.24
SPTLC1P3-201ENST00000403408 PARP3Q9Y6F1 533 aa16.57■□□□□ 0.24
SPTLC1P3-201ENST00000403408 RNF181Q9P0P0 153 aa16.56■□□□□ 0.24
SPTLC1P3-201ENST00000403408 TJP1Q07157 1748 aa16.56■□□□□ 0.24
SPTLC1P3-201ENST00000403408 CAPN15O75808 1086 aa16.55■□□□□ 0.24
SPTLC1P3-201ENST00000403408 FSTL1Q12841 308 aa16.55■□□□□ 0.24
SPTLC1P3-201ENST00000403408 PIM2Q9P1W9 311 aa16.55■□□□□ 0.24
SPTLC1P3-201ENST00000403408 PLEKHG2Q9H7P9 1386 aa16.54■□□□□ 0.24
SPTLC1P3-201ENST00000403408 USP42Q9H9J4 1324 aaKnown RBP16.54■□□□□ 0.24
SPTLC1P3-201ENST00000403408 PTCD1O75127 700 aaKnown RBP16.54■□□□□ 0.24
SPTLC1P3-201ENST00000403408 TNNT2P45379 298 aaPredicted RBP16.54■□□□□ 0.24
SPTLC1P3-201ENST00000403408 CRKLP46109 303 aaKnown RBP16.54■□□□□ 0.24
SPTLC1P3-201ENST00000403408 RASSF7Q02833 373 aa16.54■□□□□ 0.24
SPTLC1P3-201ENST00000403408 POLRMTO00411 1230 aaKnown RBP16.53■□□□□ 0.24
SPTLC1P3-201ENST00000403408 TM4SF1P30408 202 aa16.53■□□□□ 0.24
SPTLC1P3-201ENST00000403408 DALRD3Q5D0E6 543 aaKnown RBP16.53■□□□□ 0.24
SPTLC1P3-201ENST00000403408 INTS5Q6P9B9 1019 aaKnown RBP16.53■□□□□ 0.24
SPTLC1P3-201ENST00000403408 AEBP1Q8IUX7 1158 aa16.53■□□□□ 0.24
SPTLC1P3-201ENST00000403408 TNRC6CQ9HCJ0 1690 aaKnown RBP16.52■□□□□ 0.23
SPTLC1P3-201ENST00000403408 AFDNP55196 1824 aaKnown RBP16.52■□□□□ 0.23
SPTLC1P3-201ENST00000403408 CDCA8Q53HL2 280 aa16.51■□□□□ 0.23
SPTLC1P3-201ENST00000403408 ZNF530Q6P9A1 599 aaPredicted RBP16.51■□□□□ 0.23
SPTLC1P3-201ENST00000403408 C16orf71Q8IYS4 520 aaPredicted RBP16.51■□□□□ 0.23
SPTLC1P3-201ENST00000403408 KDM2BQ8NHM5 1336 aa16.5■□□□□ 0.23
SPTLC1P3-201ENST00000403408 CABP4P57796 275 aa16.5■□□□□ 0.23
SPTLC1P3-201ENST00000403408 NFATC2IPQ8NCF5 419 aa16.5■□□□□ 0.23
SPTLC1P3-201ENST00000403408 CCDC88AQ3V6T2 1871 aa16.49■□□□□ 0.23
SPTLC1P3-201ENST00000403408 TNS4Q8IZW8 715 aa16.49■□□□□ 0.23
SPTLC1P3-201ENST00000403408 POTECB2RU33 542 aa16.48■□□□□ 0.23
SPTLC1P3-201ENST00000403408 PLEKHO1Q53GL0 409 aaPredicted RBP16.48■□□□□ 0.23
SPTLC1P3-201ENST00000403408 USPL1Q5W0Q7 1092 aa16.48■□□□□ 0.23
SPTLC1P3-201ENST00000403408 NRXN2Q9P2S2 1712 aa16.48■□□□□ 0.23
SPTLC1P3-201ENST00000403408 HSP90AB1P08238 724 aaKnown RBP16.47■□□□□ 0.23
SPTLC1P3-201ENST00000403408 DNAJC10Q8IXB1 793 aa16.47■□□□□ 0.23
SPTLC1P3-201ENST00000403408 SMC1BQ8NDV3 1235 aa16.47■□□□□ 0.23
SPTLC1P3-201ENST00000403408 BCL2L12Q9HB09 334 aa16.47■□□□□ 0.23
SPTLC1P3-201ENST00000403408 SCN11AQ9UI33 1791 aa16.46■□□□□ 0.23
SPTLC1P3-201ENST00000403408 HSPA1AP0DMV8 641 aaKnown RBP16.46■□□□□ 0.23
SPTLC1P3-201ENST00000403408 HSPA1BP0DMV9 641 aaKnown RBP16.46■□□□□ 0.23
SPTLC1P3-201ENST00000403408 MTHFSP49914 203 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms