RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 LARP1Q6PKG0 1096 aaKnown RBP16.23■□□□□ 0.19
COL4A3-202ENST00000396578 TNIP1Q15025 636 aa16.23■□□□□ 0.19
COL4A3-202ENST00000396578 ALS2CR12Q96Q35 445 aa16.23■□□□□ 0.19
COL4A3-202ENST00000396578 C16orf45Q96MC5 204 aaPredicted RBP16.23■□□□□ 0.19
COL4A3-202ENST00000396578 KIF21BO75037 1637 aa16.22■□□□□ 0.19
COL4A3-202ENST00000396578 CTNNBL1Q8WYA6 563 aaPredicted RBP16.22■□□□□ 0.19
COL4A3-202ENST00000396578 IPO4Q8TEX9 1081 aaKnown RBP16.22■□□□□ 0.19
COL4A3-202ENST00000396578 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.22■□□□□ 0.19
COL4A3-202ENST00000396578 PPP4R3BQ5MIZ7 849 aa16.22■□□□□ 0.19
COL4A3-202ENST00000396578 CCDC150Q8NCX0 1101 aa16.22■□□□□ 0.19
COL4A3-202ENST00000396578 PHAXQ9H814 394 aaKnown RBP16.22■□□□□ 0.19
COL4A3-202ENST00000396578 CABP4P57796 275 aa16.22■□□□□ 0.19
COL4A3-202ENST00000396578 USP5P45974 858 aa16.22■□□□□ 0.19
COL4A3-202ENST00000396578 ZNF287Q9HBT7 754 aa16.22■□□□□ 0.19
COL4A3-202ENST00000396578 TATP17735 454 aaPredicted RBP16.22■□□□□ 0.19
COL4A3-202ENST00000396578 PIBF1Q8WXW3 757 aa16.21■□□□□ 0.19
COL4A3-202ENST00000396578 GOLGA6L9A6NEM1 432 aa16.21■□□□□ 0.19
COL4A3-202ENST00000396578 GTF2F1P35269 517 aaKnown RBP eCLIP16.21■□□□□ 0.19
COL4A3-202ENST00000396578 HLTFQ14527 1009 aaKnown RBP eCLIP16.21■□□□□ 0.19
COL4A3-202ENST00000396578 YEATS4O95619 227 aa16.21■□□□□ 0.19
COL4A3-202ENST00000396578 ANKRD50Q9ULJ7 1429 aa16.21■□□□□ 0.19
COL4A3-202ENST00000396578 C6orf163Q5TEZ5 329 aa16.21■□□□□ 0.18
COL4A3-202ENST00000396578 LRP2BPQ9P2M1 347 aa16.21■□□□□ 0.18
COL4A3-202ENST00000396578 SUPT6HQ7KZ85 1726 aaKnown RBP16.2■□□□□ 0.18
COL4A3-202ENST00000396578 TMEM132EQ6IEE7 984 aa16.2■□□□□ 0.18
COL4A3-202ENST00000396578 XPCQ01831 940 aaPredicted RBP16.2■□□□□ 0.18
COL4A3-202ENST00000396578 SH2B1Q9NRF2 756 aaPredicted RBP16.2■□□□□ 0.18
COL4A3-202ENST00000396578 AIDAQ96BJ3 306 aa16.2■□□□□ 0.18
COL4A3-202ENST00000396578 CCDC196A0A1B0GTZ2 297 aa16.2■□□□□ 0.18
COL4A3-202ENST00000396578 LRRC9Q6ZRR7 1453 aa16.19■□□□□ 0.18
COL4A3-202ENST00000396578 RAB34Q9BZG1 259 aa16.19■□□□□ 0.18
COL4A3-202ENST00000396578 POLA1P09884 1462 aaPredicted RBP16.19■□□□□ 0.18
COL4A3-202ENST00000396578 TRMT1Q9NXH9 659 aaKnown RBP16.19■□□□□ 0.18
COL4A3-202ENST00000396578 DYNC1I1O14576 645 aa16.19■□□□□ 0.18
COL4A3-202ENST00000396578 MCM5P33992 734 aa16.19■□□□□ 0.18
COL4A3-202ENST00000396578 SULT6B1Q6IMI4 303 aa16.19■□□□□ 0.18
COL4A3-202ENST00000396578 ZSCAN29Q8IWY8 852 aaPredicted RBP16.19■□□□□ 0.18
COL4A3-202ENST00000396578 CEP126Q9P2H0 1117 aa16.19■□□□□ 0.18
COL4A3-202ENST00000396578 CTNNA2P26232 953 aa16.18■□□□□ 0.18
COL4A3-202ENST00000396578 PPP4R3AQ6IN85 833 aa16.18■□□□□ 0.18
COL4A3-202ENST00000396578 FSD2A1L4K1 749 aa16.18■□□□□ 0.18
COL4A3-202ENST00000396578 LMAN1P49257 510 aa16.18■□□□□ 0.18
COL4A3-202ENST00000396578 DNA2P51530 1060 aa16.18■□□□□ 0.18
COL4A3-202ENST00000396578 C8orf76Q96K31 380 aa16.18■□□□□ 0.18
COL4A3-202ENST00000396578 PAXBP1Q9Y5B6 917 aa16.18■□□□□ 0.18
COL4A3-202ENST00000396578 SMARCA4P51532 1647 aa16.18■□□□□ 0.18
COL4A3-202ENST00000396578 BBXQ8WY36 941 aaPredicted RBP16.18■□□□□ 0.18
COL4A3-202ENST00000396578 CFAP57Q96MR6 1250 aa16.18■□□□□ 0.18
COL4A3-202ENST00000396578 TIGD1Q96MW7 591 aa16.18■□□□□ 0.18
COL4A3-202ENST00000396578 RAB11FIP3O75154 756 aa16.18■□□□□ 0.18
COL4A3-202ENST00000396578 TRERF1Q96PN7 1200 aa16.18■□□□□ 0.18
COL4A3-202ENST00000396578 MACROD2A1Z1Q3 448 aa16.17■□□□□ 0.18
COL4A3-202ENST00000396578 STX1AQ16623 288 aa16.17■□□□□ 0.18
COL4A3-202ENST00000396578 ZNF428Q96B54 188 aa16.17■□□□□ 0.18
COL4A3-202ENST00000396578 SNW1Q13573 536 aaKnown RBP16.17■□□□□ 0.18
COL4A3-202ENST00000396578 GRIPAP1Q4V328 841 aa16.17■□□□□ 0.18
COL4A3-202ENST00000396578 TDRD12Q587J7 1177 aaKnown RBP16.17■□□□□ 0.18
COL4A3-202ENST00000396578 HMGB1P09429 215 aaKnown RBP16.17■□□□□ 0.18
COL4A3-202ENST00000396578 MNAT1P51948 309 aa16.17■□□□□ 0.18
COL4A3-202ENST00000396578 CEP112Q8N8E3 955 aa16.17■□□□□ 0.18
COL4A3-202ENST00000396578 CNNM3Q8NE01 707 aa16.17■□□□□ 0.18
COL4A3-202ENST00000396578 BTBD11A6QL63 1104 aa16.17■□□□□ 0.18
COL4A3-202ENST00000396578 PLEKHH2Q8IVE3 1493 aa16.16■□□□□ 0.18
COL4A3-202ENST00000396578 BMS1Q14692 1282 aaKnown RBP16.16■□□□□ 0.18
COL4A3-202ENST00000396578 PRKCSHP14314 528 aaPredicted RBP16.16■□□□□ 0.18
COL4A3-202ENST00000396578 MAATS1Q7Z4T9 603 aa16.16■□□□□ 0.18
COL4A3-202ENST00000396578 DDX23Q9BUQ8 820 aaKnown RBP16.16■□□□□ 0.18
COL4A3-202ENST00000396578 IDH1O75874 414 aaKnown RBP16.16■□□□□ 0.18
COL4A3-202ENST00000396578 SPG7Q9UQ90 795 aa16.16■□□□□ 0.18
COL4A3-202ENST00000396578 TMEM266Q2M3C6 531 aa16.16■□□□□ 0.18
COL4A3-202ENST00000396578 FERMT3Q86UX7 667 aa16.16■□□□□ 0.18
COL4A3-202ENST00000396578 TMX1Q9H3N1 280 aa16.16■□□□□ 0.18
COL4A3-202ENST00000396578 HOMER2Q9NSB8 354 aa16.16■□□□□ 0.18
COL4A3-202ENST00000396578 HSF2BPO75031 334 aa16.16■□□□□ 0.18
COL4A3-202ENST00000396578 DNAAF4Q8WXU2 420 aa16.16■□□□□ 0.18
COL4A3-202ENST00000396578 RPAP2Q8IXW5 612 aaPredicted RBP16.15■□□□□ 0.18
COL4A3-202ENST00000396578 UBA5Q9GZZ9 404 aa16.15■□□□□ 0.18
COL4A3-202ENST00000396578 FERP16591 822 aa16.15■□□□□ 0.18
COL4A3-202ENST00000396578 KIF1BPQ96EK5 621 aa16.15■□□□□ 0.18
COL4A3-202ENST00000396578 KIF20AO95235 890 aa16.15■□□□□ 0.18
COL4A3-202ENST00000396578 IL1RAPL2Q9NP60 686 aa16.15■□□□□ 0.18
COL4A3-202ENST00000396578 CEP135Q66GS9 1140 aa16.15■□□□□ 0.18
COL4A3-202ENST00000396578 ESCO1Q5FWF5 840 aa16.15■□□□□ 0.18
COL4A3-202ENST00000396578 GLRX3O76003 335 aaKnown RBP16.15■□□□□ 0.18
COL4A3-202ENST00000396578 ADCY5O95622 1261 aa16.14■□□□□ 0.17
COL4A3-202ENST00000396578 HSPA4P34932 840 aa16.14■□□□□ 0.17
COL4A3-202ENST00000396578 TMC6Q7Z403 805 aa16.14■□□□□ 0.17
COL4A3-202ENST00000396578 SPINK5Q9NQ38 1064 aaPredicted RBP16.14■□□□□ 0.17
COL4A3-202ENST00000396578 CETN1Q12798 172 aa16.14■□□□□ 0.17
COL4A3-202ENST00000396578 RBM25P49756 843 aaKnown RBP16.14■□□□□ 0.17
COL4A3-202ENST00000396578 EHBP1Q8NDI1 1231 aa16.14■□□□□ 0.17
COL4A3-202ENST00000396578 USP25Q9UHP3 1055 aa16.14■□□□□ 0.17
COL4A3-202ENST00000396578 DDX19AQ9NUU7 478 aaKnown RBP16.14■□□□□ 0.17
COL4A3-202ENST00000396578 ZHX1Q9UKY1 873 aaPredicted RBP16.14■□□□□ 0.17
COL4A3-202ENST00000396578 AKAP2Q9Y2D5 859 aa16.14■□□□□ 0.17
COL4A3-202ENST00000396578 JADE2Q9NQC1 790 aa16.14■□□□□ 0.17
COL4A3-202ENST00000396578 DDX12PQ92771 950 aa16.13■□□□□ 0.17
COL4A3-202ENST00000396578 PRIMPOLQ96LW4 560 aa16.13■□□□□ 0.17
COL4A3-202ENST00000396578 RUSC2Q8N2Y8 1516 aa16.13■□□□□ 0.17
COL4A3-202ENST00000396578 TMCO5BA8MYB1 307 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms