RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 ABCA3Q99758 1704 aa31.74■■■□□ 2.67
SHOX2-201ENST00000389589 CHRNA2Q15822 529 aa31.74■■■□□ 2.67
SHOX2-201ENST00000389589 BTBD11A6QL63 1104 aa31.72■■■□□ 2.67
SHOX2-201ENST00000389589 EIF4A1P60842 406 aaKnown RBP31.72■■■□□ 2.67
SHOX2-201ENST00000389589 SCN11AQ9UI33 1791 aa31.72■■■□□ 2.67
SHOX2-201ENST00000389589 G2E3Q7L622 706 aa31.72■■■□□ 2.67
SHOX2-201ENST00000389589 GCC1Q96CN9 775 aa31.71■■■□□ 2.67
SHOX2-201ENST00000389589 SPG7Q9UQ90 795 aa31.71■■■□□ 2.67
SHOX2-201ENST00000389589 CCT4P50991 539 aaKnown RBP31.71■■■□□ 2.67
SHOX2-201ENST00000389589 N4BP2Q86UW6 1770 aaPredicted RBP31.7■■■□□ 2.67
SHOX2-201ENST00000389589 C1orf115Q9H7X2 142 aa31.7■■■□□ 2.67
SHOX2-201ENST00000389589 PKD1L3Q7Z443 1732 aa31.69■■■□□ 2.66
SHOX2-201ENST00000389589 FLIIQ13045 1269 aa31.69■■■□□ 2.66
SHOX2-201ENST00000389589 HDGFL1Q5TGJ6 251 aa31.69■■■□□ 2.66
SHOX2-201ENST00000389589 MEGF6O75095 1541 aa31.68■■■□□ 2.66
SHOX2-201ENST00000389589 MSH5O43196 834 aa31.68■■■□□ 2.66
SHOX2-201ENST00000389589 NUCB1Q02818 461 aa31.68■■■□□ 2.66
SHOX2-201ENST00000389589 IPO9Q96P70 1041 aaKnown RBP31.66■■■□□ 2.66
SHOX2-201ENST00000389589 PRDM11Q9NQV5 511 aa31.66■■■□□ 2.66
SHOX2-201ENST00000389589 FKBP5Q13451 457 aaPredicted RBP31.64■■■□□ 2.66
SHOX2-201ENST00000389589 NPM2Q86SE8 214 aaKnown RBP31.64■■■□□ 2.66
SHOX2-201ENST00000389589 SIRT2Q8IXJ6 389 aa31.64■■■□□ 2.66
SHOX2-201ENST00000389589 PXDNLA1KZ92 1463 aa31.63■■■□□ 2.65
SHOX2-201ENST00000389589 RPAP2Q8IXW5 612 aaPredicted RBP31.63■■■□□ 2.65
SHOX2-201ENST00000389589 NECTIN2Q92692 538 aa31.63■■■□□ 2.65
SHOX2-201ENST00000389589 PARP4Q9UKK3 1724 aaKnown RBP31.62■■■□□ 2.65
SHOX2-201ENST00000389589 PHKG2P15735 406 aa31.62■■■□□ 2.65
SHOX2-201ENST00000389589 IFNL2Q8IZJ0 200 aa31.62■■■□□ 2.65
SHOX2-201ENST00000389589 SLC4A10Q6U841 1118 aa31.61■■■□□ 2.65
SHOX2-201ENST00000389589 WDR17Q8IZU2 1322 aa31.61■■■□□ 2.65
SHOX2-201ENST00000389589 F6X3S4 739 aa31.61■■■□□ 2.65
SHOX2-201ENST00000389589 KCNQ3O43525 872 aa31.61■■■□□ 2.65
SHOX2-201ENST00000389589 CHD1LQ86WJ1 897 aa31.61■■■□□ 2.65
SHOX2-201ENST00000389589 ANKRD44Q8N8A2 993 aa31.6■■■□□ 2.65
SHOX2-201ENST00000389589 ATP10DQ9P241 1426 aa31.6■■■□□ 2.65
SHOX2-201ENST00000389589 HEG1Q9ULI3 1381 aa31.59■■■□□ 2.65
SHOX2-201ENST00000389589 MEIS3Q99687 375 aa31.58■■■□□ 2.65
SHOX2-201ENST00000389589 COL5A2P05997 1499 aaPredicted RBP31.58■■■□□ 2.65
SHOX2-201ENST00000389589 KDM6AO15550 1401 aaPredicted RBP31.58■■■□□ 2.65
SHOX2-201ENST00000389589 EIF2S2P20042 333 aaKnown RBP31.57■■■□□ 2.64
SHOX2-201ENST00000389589 HSP90AB1P08238 724 aaKnown RBP31.56■■■□□ 2.64
SHOX2-201ENST00000389589 SLC52A2Q9HAB3 445 aa31.56■■■□□ 2.64
SHOX2-201ENST00000389589 CEP85Q6P2H3 762 aa31.55■■■□□ 2.64
SHOX2-201ENST00000389589 ANKRD45Q5TZF3 282 aa31.55■■■□□ 2.64
SHOX2-201ENST00000389589 DCAF5Q96JK2 942 aa31.55■■■□□ 2.64
SHOX2-201ENST00000389589 DCTPP1Q9H773 170 aa31.55■■■□□ 2.64
SHOX2-201ENST00000389589 MRC1P22897 1456 aa31.54■■■□□ 2.64
SHOX2-201ENST00000389589 LNPKQ9C0E8 428 aa31.54■■■□□ 2.64
SHOX2-201ENST00000389589 GIGYF1O75420 1035 aaPredicted RBP31.53■■■□□ 2.64
SHOX2-201ENST00000389589 TOM1L2Q6ZVM7 507 aa31.53■■■□□ 2.64
SHOX2-201ENST00000389589 GNAI3P08754 354 aa31.52■■■□□ 2.64
SHOX2-201ENST00000389589 CHPF2Q9P2E5 772 aa31.52■■■□□ 2.64
SHOX2-201ENST00000389589 PHAXQ9H814 394 aaKnown RBP31.52■■■□□ 2.64
SHOX2-201ENST00000389589 DBF4Q9UBU7 674 aaPredicted RBP31.52■■■□□ 2.64
SHOX2-201ENST00000389589 ROBO1Q9Y6N7 1651 aa31.51■■■□□ 2.63
SHOX2-201ENST00000389589 DDRGK1Q96HY6 314 aa31.51■■■□□ 2.63
SHOX2-201ENST00000389589 CYP27B1O15528 508 aa31.5■■■□□ 2.63
SHOX2-201ENST00000389589 ERICH6Q7L0X2 663 aa31.5■■■□□ 2.63
SHOX2-201ENST00000389589 NOP58Q9Y2X3 529 aaKnown RBP31.5■■■□□ 2.63
SHOX2-201ENST00000389589 HMMRO75330 724 aa31.5■■■□□ 2.63
SHOX2-201ENST00000389589 GNAI2P04899 355 aa31.5■■■□□ 2.63
SHOX2-201ENST00000389589 CARD10Q9BWT7 1032 aa31.49■■■□□ 2.63
SHOX2-201ENST00000389589 ZBTB47Q9UFB7 747 aaPredicted RBP31.49■■■□□ 2.63
SHOX2-201ENST00000389589 ZNF790Q6PG37 636 aa31.48■■■□□ 2.63
SHOX2-201ENST00000389589 AHDC1Q5TGY3 1603 aaPredicted RBP31.48■■■□□ 2.63
SHOX2-201ENST00000389589 NFATC2IPQ8NCF5 419 aa31.46■■■□□ 2.63
SHOX2-201ENST00000389589 PCDH11XQ9BZA7 1347 aa31.46■■■□□ 2.63
SHOX2-201ENST00000389589 PCDH11YQ9BZA8 1340 aa31.46■■■□□ 2.63
SHOX2-201ENST00000389589 LTBP4Q8N2S1 1624 aa31.45■■■□□ 2.63
SHOX2-201ENST00000389589 EVA1CP58658 441 aa31.44■■■□□ 2.62
SHOX2-201ENST00000389589 ZCRB1Q8TBF4 217 aaKnown RBP31.44■■■□□ 2.62
SHOX2-201ENST00000389589 C5P01031 1676 aa31.43■■■□□ 2.62
SHOX2-201ENST00000389589 COL22A1Q8NFW1 1626 aaPredicted RBP31.43■■■□□ 2.62
SHOX2-201ENST00000389589 DNAAF4Q8WXU2 420 aa31.42■■■□□ 2.62
SHOX2-201ENST00000389589 SRCIN1Q9C0H9 1055 aa31.42■■■□□ 2.62
SHOX2-201ENST00000389589 HYPKQ9NX55 129 aa31.42■■■□□ 2.62
SHOX2-201ENST00000389589 IL2RBP14784 551 aa31.42■■■□□ 2.62
SHOX2-201ENST00000389589 UPF2Q9HAU5 1272 aaKnown RBP31.41■■■□□ 2.62
SHOX2-201ENST00000389589 COL14A1Q05707 1796 aaKnown RBP31.41■■■□□ 2.62
SHOX2-201ENST00000389589 SEC24BO95487 1268 aa31.4■■■□□ 2.62
SHOX2-201ENST00000389589 SLC39A6Q13433 755 aa31.4■■■□□ 2.62
SHOX2-201ENST00000389589 BMP2KLQ5H9B9 411 aa31.4■■■□□ 2.62
SHOX2-201ENST00000389589 PI4KAP2A4QPH2 592 aa31.39■■■□□ 2.62
SHOX2-201ENST00000389589 CABP4P57796 275 aa31.39■■■□□ 2.62
SHOX2-201ENST00000389589 TTC5Q8N0Z6 440 aa31.39■■■□□ 2.62
SHOX2-201ENST00000389589 PI4KAP1Q8N8J0 262 aa31.39■■■□□ 2.62
SHOX2-201ENST00000389589 USP44Q9H0E7 712 aa31.39■■■□□ 2.62
SHOX2-201ENST00000389589 STRN4Q9NRL3 753 aa31.39■■■□□ 2.62
SHOX2-201ENST00000389589 SHANK3Q9BYB0 1731 aa31.39■■■□□ 2.62
SHOX2-201ENST00000389589 DDX21Q9NR30 783 aaKnown RBP eCLIP31.39■■■□□ 2.62
SHOX2-201ENST00000389589 LARP1Q6PKG0 1096 aaKnown RBP31.38■■■□□ 2.61
SHOX2-201ENST00000389589 UBTFL1P0CB47 393 aaPredicted RBP31.37■■■□□ 2.61
SHOX2-201ENST00000389589 ADCY9O60503 1353 aa31.37■■■□□ 2.61
SHOX2-201ENST00000389589 PRAMEF22A3QJZ6 481 aa31.37■■■□□ 2.61
SHOX2-201ENST00000389589 ANXA1P04083 346 aa31.36■■■□□ 2.61
SHOX2-201ENST00000389589 ATP8B2P98198 1209 aa31.36■■■□□ 2.61
SHOX2-201ENST00000389589 BEND3Q5T5X7 828 aa31.36■■■□□ 2.61
SHOX2-201ENST00000389589 NKX1-1Q15270 411 aaPredicted RBP31.35■■■□□ 2.61
SHOX2-201ENST00000389589 KSR2Q6VAB6 950 aa31.35■■■□□ 2.61
SHOX2-201ENST00000389589 ERVV-2B6SEH9 535 aa31.34■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms